Collection of QC tools

[bittremieux]

Collection of active tools for QC of biological mass spectrometry:

• iMonDB: instrument parameters from Thermo raw files
• MsQuality
• MsStatsQC
• PeakQC
• pmartR
• PTXQC:: based on MaxQuant
• QC4Metabolomics
• QCCalculator
• QCactus
• QCeltis
• QCloud
• QuaMeter: ID-based and ID-free
• Rapid QC-MS
• SIMPATIQCO
• Yamato

Work in progress...

[bittremieux]

@fatemehmirzade Can you update this list based on the literature study you've performed? This can then be updated on our documentation page to include the following:

• Overview of QC tools that have been developed mass spectrometry, a 1–2 sentence description, and where they can be found.
• A categorization of each tool: which type of experiments are they relevant for? This can use the same categories as the newly defined acquisition strategy dimension.
• Indicator whether they support mzQC or not (and if relevant, levels of compliance).
• No need to provide a detailed list of all metrics the tools compute.

You can first produce this as a table or spreadsheet, and then we can port everything over to the documentation page afterwards.

[julianu]

As a shameless ad:
Could you also add https://github.com/mpc-bioinformatics/McQuaC to the list? It does already run - only the publication is pending. And the mzQC support, though I am working on this in the next weeks.