diff --git a/PSI-MOD.obo b/PSI-MOD.obo index c403715..31f9877 100644 --- a/PSI-MOD.obo +++ b/PSI-MOD.obo @@ -17,8 +17,8 @@ synonymtypedef: Unimod-description "Description (full_name) from Unimod" RELATED synonymtypedef: Unimod-interim "Interim label from Unimod" RELATED synonymtypedef: UniProt-feature "Protein feature description from UniProtKB" EXACT default-namespace: PSI-MOD -data-version: 1.032.2 -remark: PSI-MOD version: 1.032.2 +data-version: 1.032.3 +remark: PSI-MOD version: 1.032.3 remark: RESID release: 75.00 remark: ISO-8601 date: 2022-06-13 12:12Z remark: Annotation note 01 - "[PSI-MOD:ref]" has been replaced by PubMed:18688235. @@ -41168,6 +41168,190 @@ subset: PSI-MOD-slim synonym: "ModDAsn" EXACT PSI-MOD-label [] is_a: MOD:00203 ! D-asparagine +[Term] +id: MOD:02106 +name: 4-hydroxy-L-tryptophan +def: "A protein modification that effectively converts an L-tryptophan residue to a 4-hydroxy-L-tryptophan." [PMID:32911085] +synonym: "(S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "16.00" +xref: DiffFormula: "C 0 H 0 N 0 O 1" +xref: DiffMono: "15.994915" +xref: Formula: "C 11 H 10 N 2 O 2" +xref: MassAvg: "202.21" +xref: MassMono: "202.074228" +xref: Origin: "W" +xref: Source: "hypothetical" +xref: TermSpec: "none" +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02107 +name: 5-hydroxy-L-tryptophan +def: "A protein modification that effectively converts an L-tryptophan residue to a 5-hydroxy-L-tryptophan." [PMID:32911085] +synonym: "(S)-2-Amino-3-(5-hydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "16.00" +xref: DiffFormula: "C 0 H 0 N 0 O 1" +xref: DiffMono: "15.994915" +xref: Formula: "C 11 H 10 N 2 O 2" +xref: MassAvg: "202.21" +xref: MassMono: "202.074228" +xref: Origin: "W" +xref: Source: "hypothetical" +xref: TermSpec: "none" +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02108 +name: 6-hydroxy-L-tryptophan +def: "A protein modification that effectively converts an L-tryptophan residue to a 6-hydroxy-L-tryptophan." [PMID:32911085] +synonym: "(S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "16.00" +xref: DiffFormula: "C 0 H 0 N 0 O 1" +xref: DiffMono: "15.994915" +xref: Formula: "C 11 H 10 N 2 O 2" +xref: MassAvg: "202.21" +xref: MassMono: "202.074228" +xref: Origin: "W" +xref: Source: "hypothetical" +xref: TermSpec: "none" +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02109 +name: oxindolylalanine +def: "A protein modification that effectively converts an L-tryptophan residue to a oxindolylalanine." [PMID:32911085] +synonym: "Oxindolyl-L-alanine" EXACT PSI-MOD-alternate [] +synonym:"2-amino-3-(2-oxoindolin-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "16.00" +xref: DiffFormula: "C 0 H 0 N 0 O 1" +xref: DiffMono: "15.994915" +xref: Formula: "C 11 H 10 N 2 O 2" +xref: MassAvg: "202.21" +xref: MassMono: "202.074228" +xref: Origin: "W" +xref: Source: "hypothetical" +xref: TermSpec: "none" +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02110 +name: 5-hydroxy-L-proline +def: "A protein modification that effectively converts an L-proline residue to 5-hydroxy-L-proline" [ChEBI:18095, PubMed:11292863, PubMed:2400108, PubMed:3734192, RESID:AA0030] +subset: PSI-MOD-slim +synonym: "(2S,5S)-5-hydroxypyrrolidine-2-carboxylic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "16.00" +xref: DiffFormula: "C 0 H 0 N 0 O 1" +xref: DiffMono: "15.994915" +xref: Formula: "C 5 H 7 N 1 O 2" +xref: MassAvg: "113.12" +xref: MassMono: "113.047678" +xref: Origin: "P" +xref: Source: "natural" +xref: TermSpec: "none" +is_a: MOD:01024 ! monohydroxylated proline + +[Term] +id: MOD:02111 +name: (2S,4S)-5-hydroxyleucine +def: "A protein modification that effectively converts an L-leucine residue to a (2S,4S)-5-hydroxyleucine." [PubMed:9164839] +synonym: "(2S,4S)-2-amino-5-hydroxy-4-methylpentanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "16.00" +xref: DiffFormula: "C 0 H 0 N 0 O 1" +xref: DiffMono: "15.994915" +xref: Formula: "C 6 H 11 N 1 O 2" +xref: MassAvg: "129.16" +xref: MassMono: "129.078979" +xref: Origin: "L" +xref: Source: "artifact" +xref: TermSpec: "none" +is_a: MOD:01411 ! monohydroxylated leucine + +[Term] +id: MOD:02112 +name: 4,5-Dihydroxytryptophan +def: "A protein modification that converts an L-tryptophan residue to 4,5-Dihydroxytryptophan." [PubMed:16046449, PubMed:30267362] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(2S)-2-amino-3-(4,5-dihydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "32.00" +xref: DiffFormula: "O 2" +xref: DiffMono: "31.989829" +xref: Formula: "C 11 H 10 N 2 O 3" +xref: MassAvg: "218.21" +xref: MassMono: "218.069142" +xref: Origin: "W" +xref: Source: "hypothetical" +xref: TermSpec: "none" +xref: Unimod: "Unimod:425" +is_a: MOD:00918 ! modified L-tryptophan residue + +[Term] +id: MOD:02113 +name: 5,6-Dihydroxytryptophan +def: "A protein modification that converts an L-tryptophan residue to 5,6-Dihydroxytryptophan." [PubMed:16046449, PubMed:30267362] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(2S)-2-amino-3-(5,6-dihydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "32.00" +xref: DiffFormula: "O 2" +xref: DiffMono: "31.989829" +xref: Formula: "C 11 H 10 N 2 O 3" +xref: MassAvg: "218.21" +xref: MassMono: "218.069142" +xref: Origin: "W" +xref: Source: "hypothetical" +xref: TermSpec: "none" +xref: Unimod: "Unimod:425" +is_a: MOD:00918 ! modified L-tryptophan residue + +[Term] +id: MOD:02114 +name: 5,7-Dihydroxytryptophan +def: "A protein modification that converts an L-tryptophan residue to 5,7-Dihydroxytryptophan." [PubMed:16046449, PubMed:30267362] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(2S)-2-amino-3-(5,7-dihydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "32.00" +xref: DiffFormula: "O 2" +xref: DiffMono: "31.989829" +xref: Formula: "C 11 H 10 N 2 O 3" +xref: MassAvg: "218.21" +xref: MassMono: "218.069142" +xref: Origin: "W" +xref: Source: "hypothetical" +xref: TermSpec: "none" +xref: Unimod: "Unimod:425" +is_a: MOD:00918 ! modified L-tryptophan residue + +[Term] +id: MOD:02115 +name: Dioxindolylalanine +def: "A protein modification that converts an L-tryptophan residue to dioxindolylalanine." [PubMed:10554268, PubMed:32911085] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(alphaS)-alpha-Amino-2,3-dihydro-3-hydroxy-2-oxo-1H-indole-3-propanoic acid" EXACT PSI-MOD-alternate [] +synonym: "(2S)-2-amino-3-(3-hydroxy-2-oxo-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +synonym: "Dioxindolyl-L-alanine" EXACT PSI-MOD-alternate [] +xref: DiffAvg: "32.00" +xref: DiffFormula: "O 2" +xref: DiffMono: "31.989829" +xref: Formula: "C 11 H 10 N 2 O 3" +xref: MassAvg: "218.21" +xref: MassMono: "218.069142" +xref: Origin: "W" +xref: Source: "artifact" +xref: TermSpec: "none" +xref: Unimod: "Unimod:425" +is_a: MOD:00918 ! modified L-tryptophan residue + [Term] id: MOD:02098 name: residue modified by radical mechanism