From be837822f13d67707226483de5cbb914023396cf Mon Sep 17 00:00:00 2001 From: GitHub Date: Fri, 21 Nov 2025 16:56:38 +0000 Subject: [PATCH] Update OWL file --- PSI-MOD-newstyle.obo | 7765 ++++++++++++++++++++++-------------------- PSI-MOD.owl | 797 ++++- 2 files changed, 4826 insertions(+), 3736 deletions(-) diff --git a/PSI-MOD-newstyle.obo b/PSI-MOD-newstyle.obo index a05e132..b9fc6db 100644 --- a/PSI-MOD-newstyle.obo +++ b/PSI-MOD-newstyle.obo @@ -1,7 +1,7 @@ format-version: 1.2 ontology: mod -date: 13:06:2021 12:12 -saved-by: Charles Tapley Hoyt +date: 17:11:2025 12:12 +saved-by: Eric Deutsch subsetdef: PSI-MOD-slim "subset of protein modifications" synonymtypedef: DeltaMass-label "Label from MS DeltaMass" EXACT synonymtypedef: OMSSA-label "Short label from OMSSA" EXACT @@ -17,8 +17,8 @@ synonymtypedef: Unimod-description "Description (full_name) from Unimod" RELATED synonymtypedef: Unimod-interim "Interim label from Unimod" RELATED synonymtypedef: UniProt-feature "Protein feature description from UniProtKB" EXACT default-namespace: PSI-MOD -data-version: 1.031.5 -remark: PSI-MOD version: 1.031.5 +data-version: 1.032.4 +remark: PSI-MOD version: 1.032.4 remark: RESID release: 75.00 remark: ISO-8601 date: 2022-06-13 12:12Z remark: Annotation note 01 - \"[PSI-MOD:ref]\" has been replaced by PubMed:18688235. @@ -46,7 +46,7 @@ name: alkylated residue def: "A protein modification that effectively replaces a hydrogen atom with an alkyl group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "AlkylRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00002 @@ -56,15 +56,15 @@ subset: PSI-MOD-slim synonym: "OGlycoSer" EXACT PSI-MOD-label [] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00396 -is_a: MOD:00916 +is_a: MOD:00396 ! O-glycosylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00003 name: Unimod def: "Entry from Unimod." [PubMed:18688235] comment: This term is for organizational use only and should not be assigned. [JSG] -is_a: MOD:00032 +is_a: MOD:00032 ! uncategorized protein modification [Term] id: MOD:00004 @@ -80,8 +80,8 @@ subset: PSI-MOD-slim synonym: "OGlycoThr" EXACT PSI-MOD-label [] property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00396 -is_a: MOD:00917 +is_a: MOD:00396 ! O-glycosylated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00006 @@ -89,7 +89,7 @@ name: N-glycosylated residue def: "A protein modification that effectively replaces a residue hydrogen atom on a nitrogen with a carbohydrate-like group through a glycosidic bond." [PubMed:18688235] subset: PSI-MOD-slim synonym: "NGlycoRes" EXACT PSI-MOD-label [] -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00007 @@ -104,7 +104,7 @@ property_value: DiffMono "47.944450" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:162 -is_a: MOD:00745 +is_a: MOD:00745 ! selenium containing residue [Term] id: MOD:00008 @@ -121,7 +121,7 @@ synonym: "alpha-amino acid" EXACT RESID-name [] synonym: "Res" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00010 @@ -143,9 +143,9 @@ property_value: MassAvg "71.08" xsd:float property_value: MassMono "71.037114" xsd:float property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00570 -is_a: MOD:00859 -is_a: MOD:01441 +is_a: MOD:00570 ! residues isobaric at 71.037114 Da +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00011 @@ -169,7 +169,7 @@ property_value: MassAvg "156.19" xsd:float property_value: MassMono "156.101111" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00012 @@ -198,8 +198,8 @@ property_value: MassAvg "114.10" xsd:float property_value: MassMono "114.042927" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -is_a: MOD:01441 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00013 @@ -219,8 +219,8 @@ property_value: MassAvg "115.09" xsd:float property_value: MassMono "115.026943" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -is_a: MOD:01441 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00014 @@ -252,8 +252,8 @@ property_value: MassAvg "103.14" xsd:float property_value: MassMono "103.009185" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -is_a: MOD:01441 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00015 @@ -276,8 +276,8 @@ property_value: MassAvg "129.12" xsd:float property_value: MassMono "129.042593" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -is_a: MOD:01441 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00016 @@ -303,8 +303,8 @@ property_value: MassAvg "128.13" xsd:float property_value: MassMono "128.058578" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00894 -is_a: MOD:01441 +is_a: MOD:00894 ! residues isobaric at 128.058578 Da +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00017 @@ -325,7 +325,7 @@ property_value: MassAvg "57.05" xsd:float property_value: MassMono "57.021464" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00018 @@ -349,7 +349,7 @@ property_value: MassAvg "137.14" xsd:float property_value: MassMono "137.058912" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00019 @@ -372,8 +372,8 @@ property_value: MassAvg "113.16" xsd:float property_value: MassMono "113.084064" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00306 -is_a: MOD:01441 +is_a: MOD:00306 ! residues isobaric at 113.084064 Da +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00020 @@ -395,8 +395,8 @@ property_value: MassAvg "113.16" xsd:float property_value: MassMono "113.084064" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00306 -is_a: MOD:01441 +is_a: MOD:00306 ! residues isobaric at 113.084064 Da +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00021 @@ -418,8 +418,8 @@ property_value: MassAvg "128.18" xsd:float property_value: MassMono "128.094963" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00893 -is_a: MOD:01441 +is_a: MOD:00893 ! residues isobaric at 128.0-128.1 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00022 @@ -446,7 +446,7 @@ property_value: MassAvg "131.19" xsd:float property_value: MassMono "131.040485" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00023 @@ -466,7 +466,7 @@ property_value: MassAvg "147.18" xsd:float property_value: MassMono "147.068414" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00024 @@ -485,7 +485,7 @@ property_value: MassAvg "97.12" xsd:float property_value: MassMono "97.052764" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00025 @@ -507,7 +507,7 @@ property_value: MassAvg "87.08" xsd:float property_value: MassMono "87.032028" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00026 @@ -529,7 +529,7 @@ property_value: MassAvg "101.10" xsd:float property_value: MassMono "101.047678" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00027 @@ -550,7 +550,7 @@ property_value: MassAvg "186.21" xsd:float property_value: MassMono "186.079313" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00028 @@ -572,7 +572,7 @@ property_value: MassAvg "163.18" xsd:float property_value: MassMono "163.063329" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00029 @@ -593,7 +593,7 @@ property_value: MassAvg "99.13" xsd:float property_value: MassMono "99.068414" xsd:float property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01441 +is_a: MOD:01441 ! natural, standard, encoded residue [Term] id: MOD:00030 @@ -619,7 +619,7 @@ property_value: MassMono "160.043225" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00868 +is_a: MOD:00868 ! natural, non-standard encoded residue [Term] id: MOD:00031 @@ -642,16 +642,16 @@ property_value: MassAvg "150.05" xsd:float property_value: MassMono "150.953635" xsd:float property_value: Origin "U" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00745 -is_a: MOD:00859 -is_a: MOD:00868 +is_a: MOD:00745 ! selenium containing residue +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:00868 ! natural, non-standard encoded residue [Term] id: MOD:00032 name: uncategorized protein modification def: "A protein modification that is not chemically categorized." [PubMed:18688235] comment: This term is for organizational use only and should not be assigned. [JSG] -is_a: MOD:00000 +is_a: MOD:00000 ! protein modification [Term] id: MOD:00033 @@ -660,7 +660,7 @@ def: "A protein modification that crosslinks two or more amino acid residues wit comment: The covalent bond is formed directly between sidechain atoms. If non-aminoacid atoms are involved in connecting two or more peptide chain residues peptide chain, the connection is classified as a multivalent binding site. subset: PSI-MOD-slim synonym: "XLNK-Res-Res" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00034 @@ -693,7 +693,7 @@ property_value: MassAvg "204.26" xsd:float property_value: MassMono "204.002720" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00689 +is_a: MOD:00689 ! disulfide crosslinked residues [Term] id: MOD:00035 @@ -717,7 +717,7 @@ property_value: MassMono "130.037842" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0369 -is_a: MOD:01688 +is_a: MOD:01688 ! 3-hydroxy-L-asparagine [Term] id: MOD:00036 @@ -745,7 +745,7 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 xref: uniprot.ptm:PTM-0371 -is_a: MOD:01926 +is_a: MOD:01926 ! 3-hydroxy-L-aspartic acid [Term] id: MOD:00037 @@ -763,7 +763,7 @@ property_value: MassMono "144.089878" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0044 -is_a: MOD:01047 +is_a: MOD:01047 ! monohydroxylated lysine [Term] id: MOD:00038 @@ -787,7 +787,7 @@ property_value: MassMono "113.047678" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0030 -is_a: MOD:01024 +is_a: MOD:01024 ! monohydroxylated proline [Term] id: MOD:00039 @@ -812,7 +812,7 @@ property_value: MassMono "113.047678" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0043 -is_a: MOD:01024 +is_a: MOD:01024 ! monohydroxylated proline [Term] id: MOD:00040 @@ -847,9 +847,9 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:28 xref: uniprot.ptm:PTM-0261 -is_a: MOD:00907 -is_a: MOD:01048 -is_a: MOD:01160 +is_a: MOD:00907 ! modified L-glutamine residue +is_a: MOD:01048 ! 2-pyrrolidone-5-carboxylic acid +is_a: MOD:01160 ! deaminated residue [Term] id: MOD:00041 @@ -882,8 +882,8 @@ property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:299 xref: uniprot.ptm:PTM-0039 -is_a: MOD:00906 -is_a: MOD:01152 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01152 ! carboxylated residue [Term] id: MOD:00042 @@ -912,8 +912,8 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: Unimod:21 xref: uniprot.ptm:PTM-0038 -is_a: MOD:00904 -is_a: MOD:01455 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01455 ! O-phosphorylated residue [Term] id: MOD:00043 @@ -941,9 +941,9 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:21 xref: uniprot.ptm:PTM-0251 -is_a: MOD:00696 -is_a: MOD:00777 -is_a: MOD:00905 +is_a: MOD:00696 ! phosphorylated residue +is_a: MOD:00777 ! residues isobaric at 182.96-182.98 Da +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00044 @@ -975,7 +975,7 @@ property_value: MassMono "217.025242" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0325 -is_a: MOD:00890 +is_a: MOD:00890 ! phosphorylated L-histidine [Term] id: MOD:00045 @@ -1007,7 +1007,7 @@ property_value: MassMono "217.025242" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0260 -is_a: MOD:00890 +is_a: MOD:00890 ! phosphorylated L-histidine [Term] id: MOD:00046 @@ -1039,9 +1039,9 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:21 xref: uniprot.ptm:PTM-0253 -is_a: MOD:00771 -is_a: MOD:00916 -is_a: MOD:01455 +is_a: MOD:00771 ! residues isobaric at 166.98-167.00 Da +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01455 ! O-phosphorylated residue [Term] id: MOD:00047 @@ -1071,9 +1071,9 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:21 xref: uniprot.ptm:PTM-0254 -is_a: MOD:00773 -is_a: MOD:00917 -is_a: MOD:01455 +is_a: MOD:00773 ! residues isobaric at 181.00-181.02 Da +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01455 ! O-phosphorylated residue [Term] id: MOD:00048 @@ -1103,9 +1103,9 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:21 xref: uniprot.ptm:PTM-0255 -is_a: MOD:00774 -is_a: MOD:00919 -is_a: MOD:01455 +is_a: MOD:00774 ! residues isobaric at 243.02-243.03 Da +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01455 ! O-phosphorylated residue [Term] id: MOD:00049 @@ -1137,7 +1137,7 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:375 xref: uniprot.ptm:PTM-0118 -is_a: MOD:00909 +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:00050 @@ -1162,8 +1162,8 @@ property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0199 -is_a: MOD:00901 -is_a: MOD:01458 +is_a: MOD:00901 ! modified L-alanine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00051 @@ -1188,8 +1188,8 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0200 -is_a: MOD:00904 -is_a: MOD:01458 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00052 @@ -1217,8 +1217,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0201 -is_a: MOD:00646 -is_a: MOD:01458 +is_a: MOD:00646 ! acetylated L-cysteine +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00053 @@ -1243,8 +1243,8 @@ property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0202 -is_a: MOD:00906 -is_a: MOD:01458 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00054 @@ -1268,8 +1268,8 @@ property_value: MassMono "171.076967" xsd:float property_value: Origin "Q" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00907 -is_a: MOD:01458 +is_a: MOD:00907 ! modified L-glutamine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00055 @@ -1295,8 +1295,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0203 -is_a: MOD:00908 -is_a: MOD:01458 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00056 @@ -1320,8 +1320,8 @@ property_value: Origin "I" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0204 -is_a: MOD:00910 -is_a: MOD:01458 +is_a: MOD:00910 ! modified L-isoleucine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00057 @@ -1345,8 +1345,8 @@ property_value: MassMono "171.113353" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00723 -is_a: MOD:01458 +is_a: MOD:00723 ! N-acetylated L-lysine +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00058 @@ -1373,8 +1373,8 @@ property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0205 -is_a: MOD:00913 -is_a: MOD:01458 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00059 @@ -1399,8 +1399,8 @@ property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0206 -is_a: MOD:00915 -is_a: MOD:01458 +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00060 @@ -1426,8 +1426,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0207 -is_a: MOD:00647 -is_a: MOD:01458 +is_a: MOD:00647 ! acetylated L-serine +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00061 @@ -1455,8 +1455,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0208 -is_a: MOD:01186 -is_a: MOD:01458 +is_a: MOD:01186 ! acetylated L-threonine +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00062 @@ -1481,8 +1481,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0209 -is_a: MOD:00919 -is_a: MOD:01458 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00063 @@ -1507,8 +1507,8 @@ property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0210 -is_a: MOD:00920 -is_a: MOD:01458 +is_a: MOD:00920 ! modified L-valine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00064 @@ -1537,8 +1537,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1 xref: uniprot.ptm:PTM-0190 -is_a: MOD:00723 -is_a: MOD:01875 +is_a: MOD:00723 ! N-acetylated L-lysine +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00065 @@ -1564,8 +1564,8 @@ property_value: MassMono "145.019749" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1 -is_a: MOD:00645 -is_a: MOD:00646 +is_a: MOD:00645 ! mono S-acetylated residue +is_a: MOD:00646 ! monoacetylated L-cysteine [Term] id: MOD:00066 @@ -1591,9 +1591,9 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0211 -is_a: MOD:00409 -is_a: MOD:00908 -is_a: MOD:01696 +is_a: MOD:00409 ! N-formylated residue +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:00067 @@ -1616,8 +1616,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0331 -is_a: MOD:00447 -is_a: MOD:00908 +is_a: MOD:00447 ! N-glucuronylated residue +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:00068 @@ -1647,9 +1647,9 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:45 xref: uniprot.ptm:PTM-0221 -is_a: MOD:00650 -is_a: MOD:00908 -is_a: MOD:01696 +is_a: MOD:00650 ! N-myristoylated residue +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:00069 @@ -1678,8 +1678,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0222 -is_a: MOD:01684 -is_a: MOD:01685 +is_a: MOD:01684 ! palmitoylated-L-cysteine +is_a: MOD:01685 ! alpha-amino palmitoylated residue [Term] id: MOD:00070 @@ -1706,8 +1706,8 @@ property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0214 -is_a: MOD:01461 -is_a: MOD:01680 +is_a: MOD:01461 ! N-methylated alanine +is_a: MOD:01680 ! alpha-amino monomethylated residue [Term] id: MOD:00071 @@ -1737,8 +1737,8 @@ property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0177 -is_a: MOD:01461 -is_a: MOD:01698 +is_a: MOD:01461 ! N-methylated alanine +is_a: MOD:01698 ! alpha-amino trimethylated protonated-residue [Term] id: MOD:00072 @@ -1767,9 +1767,9 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0483 -is_a: MOD:00570 -is_a: MOD:00714 -is_a: MOD:01680 +is_a: MOD:00570 ! residues isobaric at 71.037114 Da +is_a: MOD:00714 ! methylated glycine +is_a: MOD:01680 ! alpha-amino monomethylated residue [Term] id: MOD:00073 @@ -1797,8 +1797,8 @@ property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0217 -is_a: MOD:01463 -is_a: MOD:01680 +is_a: MOD:01463 ! N-methylated methionine +is_a: MOD:01680 ! alpha-amino monomethylated residue [Term] id: MOD:00074 @@ -1824,8 +1824,8 @@ property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0218 -is_a: MOD:01063 -is_a: MOD:01680 +is_a: MOD:01063 ! monomethylated phenylalanine +is_a: MOD:01680 ! alpha-amino monomethylated residue [Term] id: MOD:00075 @@ -1856,8 +1856,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:529 xref: uniprot.ptm:PTM-0179 -is_a: MOD:00710 -is_a: MOD:01462 +is_a: MOD:00710 ! protonated-dimethylated residue +is_a: MOD:01462 ! N-methylated proline [Term] id: MOD:00076 @@ -1886,8 +1886,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:36 xref: uniprot.ptm:PTM-0287 -is_a: MOD:00602 -is_a: MOD:00783 +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00783 ! dimethylated L-arginine [Term] id: MOD:00077 @@ -1915,8 +1915,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:36 xref: uniprot.ptm:PTM-0066 -is_a: MOD:00602 -is_a: MOD:00783 +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00783 ! dimethylated L-arginine [Term] id: MOD:00078 @@ -1941,8 +1941,8 @@ property_value: MassMono "170.116761" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0237 -is_a: MOD:00414 -is_a: MOD:00602 +is_a: MOD:00414 ! monomethylated L-arginine +is_a: MOD:00602 ! N-methylated residue [Term] id: MOD:00079 @@ -1971,10 +1971,10 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0183 -is_a: MOD:00599 -is_a: MOD:00602 -is_a: MOD:00673 -is_a: MOD:00894 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00673 ! methylated asparagine +is_a: MOD:00894 ! residues isobaric at 128.058578 Da [Term] id: MOD:00080 @@ -2001,8 +2001,8 @@ property_value: MassMono "142.074228" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0185 -is_a: MOD:00602 -is_a: MOD:00722 +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00722 ! monomethylated L-glutamine [Term] id: MOD:00081 @@ -2037,7 +2037,7 @@ property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0128 -is_a: MOD:01453 +is_a: MOD:01453 ! L-glutamic acid 5-methyl ester [Term] id: MOD:00082 @@ -2064,8 +2064,8 @@ property_value: MassMono "151.074562" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0259 -is_a: MOD:02038 -is_a: MOD:00724 +is_a: MOD:02038 ! monomethylated L-histidine +is_a: MOD:00724 ! N-methylated L-histidine [Term] id: MOD:00083 @@ -2097,9 +2097,9 @@ property_value: MassMono "171.149190" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0187 -is_a: MOD:00602 -is_a: MOD:00663 -is_a: MOD:00711 +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00663 ! methylated lysine +is_a: MOD:00711 ! trimethylated protonated-residue [Term] id: MOD:00084 @@ -2127,9 +2127,9 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:36 xref: uniprot.ptm:PTM-0188 -is_a: MOD:00429 -is_a: MOD:00602 -is_a: MOD:00663 +is_a: MOD:00429 ! dimethylated residue +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00663 ! methylated lysine [Term] id: MOD:00085 @@ -2156,8 +2156,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0194 -is_a: MOD:00602 -is_a: MOD:01683 +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:01683 ! monomethylated L-lysine [Term] id: MOD:00086 @@ -2187,8 +2187,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:47 xref: uniprot.ptm:PTM-0197 -is_a: MOD:00651 -is_a: MOD:01875 +is_a: MOD:00651 ! N-palmitoylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00087 @@ -2218,8 +2218,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:45 xref: uniprot.ptm:PTM-0196 -is_a: MOD:00650 -is_a: MOD:01875 +is_a: MOD:00650 ! N-myristoylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00088 @@ -2248,8 +2248,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:47 xref: uniprot.ptm:PTM-0242 -is_a: MOD:00652 -is_a: MOD:02004 +is_a: MOD:00652 ! O-palmitoylated residue +is_a: MOD:02004 ! O3-acylated L-threonine [Term] id: MOD:00089 @@ -2279,8 +2279,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:47 xref: uniprot.ptm:PTM-0241 -is_a: MOD:00652 -is_a: MOD:02003 +is_a: MOD:00652 ! O-palmitoylated residue +is_a: MOD:02003 ! O3-acylated L-serine [Term] id: MOD:00090 @@ -2303,8 +2303,8 @@ property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0057 -is_a: MOD:00883 -is_a: MOD:00901 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:00091 @@ -2329,8 +2329,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0060 -is_a: MOD:00883 -is_a: MOD:00902 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00092 @@ -2353,8 +2353,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0062 -is_a: MOD:00883 -is_a: MOD:00903 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00093 @@ -2380,8 +2380,8 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0063 -is_a: MOD:00883 -is_a: MOD:00904 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:00094 @@ -2405,8 +2405,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0102 -is_a: MOD:00883 -is_a: MOD:00905 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00095 @@ -2429,8 +2429,8 @@ property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0130 -is_a: MOD:00883 -is_a: MOD:00907 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:00096 @@ -2454,8 +2454,8 @@ property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0129 -is_a: MOD:00883 -is_a: MOD:00906 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00097 @@ -2480,8 +2480,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0132 -is_a: MOD:00883 -is_a: MOD:00908 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:00098 @@ -2504,8 +2504,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0148 -is_a: MOD:00883 -is_a: MOD:00909 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:00099 @@ -2528,8 +2528,8 @@ property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0161 -is_a: MOD:00883 -is_a: MOD:00910 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00910 ! modified L-isoleucine residue [Term] id: MOD:00100 @@ -2555,8 +2555,8 @@ property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0166 -is_a: MOD:00883 -is_a: MOD:00911 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00911 ! modified L-leucine residue [Term] id: MOD:00101 @@ -2579,8 +2579,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0168 -is_a: MOD:00883 -is_a: MOD:00912 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00102 @@ -2604,8 +2604,8 @@ property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0164 -is_a: MOD:00883 -is_a: MOD:00913 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00103 @@ -2628,8 +2628,8 @@ property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0248 -is_a: MOD:00883 -is_a: MOD:00914 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:00104 @@ -2652,8 +2652,8 @@ property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0257 -is_a: MOD:00883 -is_a: MOD:00915 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00105 @@ -2676,8 +2676,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0275 -is_a: MOD:00883 -is_a: MOD:00916 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00106 @@ -2700,8 +2700,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0293 -is_a: MOD:00883 -is_a: MOD:00917 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00107 @@ -2724,8 +2724,8 @@ property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0296 -is_a: MOD:00883 -is_a: MOD:00918 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00108 @@ -2748,8 +2748,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0302 -is_a: MOD:00883 -is_a: MOD:00919 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00109 @@ -2771,8 +2771,8 @@ property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0303 -is_a: MOD:00883 -is_a: MOD:00920 +is_a: MOD:00883 ! C1-amidated residue +is_a: MOD:00920 ! modified L-valine residue [Term] id: MOD:00110 @@ -2805,10 +2805,10 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:39 xref: uniprot.ptm:PTM-0104 -is_a: MOD:00848 -is_a: MOD:00905 -is_a: MOD:01153 -is_a: MOD:01862 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01153 ! methylthiolated residue +is_a: MOD:01862 ! disulfide conjugated residue [Term] id: MOD:00111 @@ -2835,8 +2835,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:44 xref: uniprot.ptm:PTM-0277 -is_a: MOD:00437 -is_a: MOD:01110 +is_a: MOD:00437 ! farnesylated residue +is_a: MOD:01110 ! isoprenylated cysteine [Term] id: MOD:00112 @@ -2859,7 +2859,7 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:376 xref: uniprot.ptm:PTM-0269 -is_a: MOD:01110 +is_a: MOD:01110 ! isoprenylated cysteine [Term] id: MOD:00113 @@ -2886,8 +2886,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:48 xref: uniprot.ptm:PTM-0278 -is_a: MOD:00441 -is_a: MOD:01110 +is_a: MOD:00441 ! geranylgeranylated residue +is_a: MOD:01110 ! isoprenylated cysteine [Term] id: MOD:00114 @@ -2917,8 +2917,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0105 -is_a: MOD:01682 -is_a: MOD:01689 +is_a: MOD:01682 ! monomethylated L-cysteine +is_a: MOD:01689 ! alpha-carboxyl methylated residue [Term] id: MOD:00115 @@ -2949,8 +2949,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:47 xref: uniprot.ptm:PTM-0281 -is_a: MOD:00653 -is_a: MOD:01684 +is_a: MOD:00653 ! S-palmitoylated residue +is_a: MOD:01684 ! palmitoylated-L-cysteine [Term] id: MOD:00116 @@ -2970,8 +2970,8 @@ synonym: "SAcyl2GlyceroCys" EXACT PSI-MOD-label [] xref: uniprot.ptm:PTM-0274 property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00905 -is_a: MOD:01155 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00117 @@ -2996,9 +2996,9 @@ property_value: MassMono "214.041213" xsd:float property_value: Origin "C, Q" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0156 -is_a: MOD:00395 -is_a: MOD:02046 -is_a: MOD:00946 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02046 ! crosslinked L-glutamine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia [Term] id: MOD:00118 @@ -3021,8 +3021,8 @@ property_value: MassMono "238.052447" xsd:float property_value: Origin "C, H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0005 -is_a: MOD:00687 -is_a: MOD:02048 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:02048 ! crosslinked L-histidine residue [Term] id: MOD:00119 @@ -3046,9 +3046,9 @@ property_value: MassAvg "172.20" xsd:float property_value: MassMono "172.030649" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02055 -is_a: MOD:00954 -is_a: MOD:01839 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01839 ! L-lanthionine [Term] id: MOD:00120 @@ -3078,9 +3078,9 @@ property_value: MassMono "172.030649" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0164 -is_a: MOD:02055 -is_a: MOD:00954 -is_a: MOD:01841 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01841 ! lanthionine [Term] id: MOD:00121 @@ -3107,7 +3107,7 @@ property_value: MassMono "186.046299" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0067 -is_a: MOD:01981 +is_a: MOD:01981 ! 3-methyllanthionine [Term] id: MOD:00122 @@ -3132,8 +3132,8 @@ property_value: MassMono "264.056863" xsd:float property_value: Origin "C, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0019 -is_a: MOD:00687 -is_a: MOD:02058 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00123 @@ -3160,8 +3160,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:299 xref: uniprot.ptm:PTM-0191 -is_a: MOD:00912 -is_a: MOD:01152 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01152 ! carboxylated residue [Term] id: MOD:00124 @@ -3186,7 +3186,7 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:378 xref: uniprot.ptm:PTM-0189 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00125 @@ -3215,9 +3215,9 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:379 xref: uniprot.ptm:PTM-0150 -is_a: MOD:00912 -is_a: MOD:01884 -relationship: derives_from MOD:01880 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01884 ! 4-aminobutylated residue +relationship: derives_from MOD:01880 ! L-deoxyhypusine [Term] id: MOD:00126 @@ -3247,8 +3247,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:3 xref: uniprot.ptm:PTM-0382 -is_a: MOD:01875 -is_a: MOD:01885 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:01885 ! biotinylated residue [Term] id: MOD:00127 @@ -3278,7 +3278,7 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:42 xref: uniprot.ptm:PTM-0383 -is_a: MOD:01875 +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00128 @@ -3303,7 +3303,7 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:46 xref: uniprot.ptm:PTM-0387 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00129 @@ -3328,7 +3328,7 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:380 xref: uniprot.ptm:PTM-0388 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00130 @@ -3361,7 +3361,7 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:352 xref: uniprot.ptm:PTM-0059 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00131 @@ -3386,7 +3386,7 @@ property_value: MassMono "143.058243" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:381 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00132 @@ -3412,10 +3412,10 @@ property_value: MassMono "197.116427" xsd:float property_value: Origin "K, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0172 -is_a: MOD:02055 -is_a: MOD:02051 -is_a: MOD:00954 -is_a: MOD:01853 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01853 ! L-lysinoalanine [Term] id: MOD:00133 @@ -3440,9 +3440,9 @@ property_value: MassMono "239.126991" xsd:float property_value: Origin "K, Q" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0158 -is_a: MOD:02046 -is_a: MOD:00946 -is_a: MOD:01630 +is_a: MOD:02046 ! crosslinked L-glutamine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia +is_a: MOD:01630 ! N6-(L-isoglutamyl)-L-lysine [Term] id: MOD:00134 @@ -3466,11 +3466,11 @@ property_value: Origin "G, K" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0134 -is_a: MOD:00688 -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:00954 -is_a: MOD:01875 +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00135 @@ -3496,9 +3496,9 @@ property_value: Origin "G, N" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0489 -is_a: MOD:02042 -is_a: MOD:00946 -is_a: MOD:01928 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia +is_a: MOD:01928 ! N-(L-isoaspartyl)-glycine [Term] id: MOD:00136 @@ -3520,8 +3520,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:382 xref: uniprot.ptm:PTM-0265 -is_a: MOD:00905 -is_a: MOD:01154 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01154 ! pyruvic acid [Term] id: MOD:00137 @@ -3543,7 +3543,7 @@ property_value: Origin "F" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:7 xref: uniprot.ptm:PTM-0035 -is_a: MOD:00914 +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:00138 @@ -3566,8 +3566,8 @@ property_value: Origin "T" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:385 xref: uniprot.ptm:PTM-0017 -is_a: MOD:00917 -is_a: MOD:01160 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01160 ! deaminated residue [Term] id: MOD:00139 @@ -3590,8 +3590,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:64 xref: uniprot.ptm:PTM-0181 -is_a: MOD:02081 -is_a: MOD:00918 +is_a: MOD:02081 ! alpha-amino succinylated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00140 @@ -3617,8 +3617,8 @@ property_value: MassMono "689.288320" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:387 -is_a: MOD:00700 -is_a: MOD:00905 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00141 @@ -3641,8 +3641,8 @@ property_value: MassMono "691.303970" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:388 -is_a: MOD:00700 -is_a: MOD:00905 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00142 @@ -3665,8 +3665,8 @@ property_value: MassMono "687.272670" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:389 -is_a: MOD:00700 -is_a: MOD:00905 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00143 @@ -3688,8 +3688,8 @@ property_value: MassAvg "822.78" xsd:float property_value: MassMono "822.195663" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00699 -is_a: MOD:02067 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00144 @@ -3715,8 +3715,8 @@ property_value: MassMono "719.186478" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:390 -is_a: MOD:00699 -is_a: MOD:02067 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00145 @@ -3735,8 +3735,8 @@ property_value: MassAvg "464.37" xsd:float property_value: MassMono "463.941474" xsd:float property_value: Origin "C, C, C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00738 -is_a: MOD:02067 +is_a: MOD:00738 ! iron containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00146 @@ -3756,8 +3756,8 @@ property_value: MassAvg "584.34" xsd:float property_value: MassMono "583.820553" xsd:float property_value: Origin "C, C, C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00147 @@ -3776,8 +3776,8 @@ property_value: MassAvg "876.50" xsd:float property_value: MassMono "875.730830" xsd:float property_value: Origin "C, C, C, C, C, C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00148 @@ -3801,8 +3801,8 @@ property_value: MassAvg "602.17" xsd:float property_value: MassMono "601.698821" xsd:float property_value: Origin "C, C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00149 @@ -3823,8 +3823,8 @@ property_value: MassAvg "760.15" xsd:float property_value: MassMono "759.634570" xsd:float property_value: Origin "C, C, C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00150 @@ -3842,10 +3842,10 @@ property_value: MassAvg "1231.81" xsd:float property_value: MassMono "1233.281133" xsd:float property_value: Origin "C, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:00743 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:00743 ! molybdenum containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00151 @@ -3870,9 +3870,9 @@ property_value: MassMono "624.893259" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:391 -is_a: MOD:00744 -is_a: MOD:00861 -is_a: MOD:02067 +is_a: MOD:00744 ! molybdenum pterin containing modification +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00152 @@ -3896,8 +3896,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:50 xref: uniprot.ptm:PTM-0272 -is_a: MOD:00895 -is_a: MOD:00905 +is_a: MOD:00895 ! FAD modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00153 @@ -3925,8 +3925,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:50 xref: uniprot.ptm:PTM-0258 -is_a: MOD:00895 -is_a: MOD:00909 +is_a: MOD:00895 ! FAD modified residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:00154 @@ -3952,8 +3952,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:50 xref: uniprot.ptm:PTM-0231 -is_a: MOD:00895 -is_a: MOD:00919 +is_a: MOD:00895 ! FAD modified residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00155 @@ -3981,8 +3981,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 xref: uniprot.ptm:PTM-0023 -is_a: MOD:00425 -is_a: MOD:00707 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00707 ! hydroxylated tyrosine [Term] id: MOD:00156 @@ -4009,8 +4009,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:392 xref: uniprot.ptm:PTM-0009 -is_a: MOD:00679 -is_a: MOD:00919 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00157 @@ -4038,8 +4038,8 @@ property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: Unimod:392 xref: uniprot.ptm:PTM-0299 -is_a: MOD:00679 -is_a: MOD:00918 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00158 @@ -4066,8 +4066,8 @@ property_value: MassMono "400.117155" xsd:float property_value: Origin "W, W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0298 -is_a: MOD:00692 -is_a: MOD:02057 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02057 ! crosslinked L-tryptophan residue [Term] id: MOD:00159 @@ -4092,8 +4092,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:49 xref: uniprot.ptm:PTM-0391 -is_a: MOD:00861 -is_a: MOD:00916 +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00160 @@ -4103,8 +4103,8 @@ subset: PSI-MOD-slim synonym: "N4GlycoAsn" EXACT PSI-MOD-label [] property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00006 -is_a: MOD:00903 +is_a: MOD:00006 ! N-glycosylated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00161 @@ -4128,9 +4128,9 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 xref: uniprot.ptm:PTM-0626 -is_a: MOD:00426 -is_a: MOD:00433 -is_a: MOD:00905 +is_a: MOD:00426 ! S-glycosylated residue +is_a: MOD:00433 ! monoglucosylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00162 @@ -4153,9 +4153,9 @@ property_value: MassMono "468.195524" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:393 -relationship: derives_from MOD:00037 -is_a: MOD:00912 -is_a: MOD:00396 +relationship: derives_from MOD:00037 ! 5-hydroxy-L-lysine +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:00396 ! O-glycosylated residue [Term] id: MOD:00163 @@ -4178,8 +4178,8 @@ property_value: MassMono "290.111401" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0564 -is_a: MOD:00563 -is_a: MOD:01675 +is_a: MOD:00563 ! mono-N-acetylaminogalactosylated residue +is_a: MOD:01675 ! O-(N-acetylamino)hexosyl-L-serine [Term] id: MOD:00164 @@ -4203,8 +4203,8 @@ property_value: MassMono "304.127051" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0567 -is_a: MOD:00563 -is_a: MOD:01676 +is_a: MOD:00563 ! mono-N-acetylaminogalactosylated residue +is_a: MOD:01676 ! O-(N-acetylamino)hexosyl-L-threonine [Term] id: MOD:00165 @@ -4227,9 +4227,9 @@ property_value: MassMono "348.132136" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0535 -is_a: MOD:00006 -is_a: MOD:00595 -is_a: MOD:00918 +is_a: MOD:00006 ! N-glycosylated residue +is_a: MOD:00595 ! monomannosylated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00166 @@ -4252,8 +4252,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 xref: uniprot.ptm:PTM-0575 -is_a: MOD:00433 -is_a: MOD:01927 +is_a: MOD:00433 ! monoglucosylated residue +is_a: MOD:01927 ! O-glycosyl-L-tyrosine [Term] id: MOD:00167 @@ -4272,8 +4272,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0137 -is_a: MOD:00818 -is_a: MOD:00903 +is_a: MOD:00818 ! glycosylphosphatidylinositolated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00168 @@ -4292,8 +4292,8 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0138 -is_a: MOD:00818 -is_a: MOD:00904 +is_a: MOD:00818 ! glycosylphosphatidylinositolated residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:00169 @@ -4312,8 +4312,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0140 -is_a: MOD:00818 -is_a: MOD:00905 +is_a: MOD:00818 ! glycosylphosphatidylinositolated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00170 @@ -4332,8 +4332,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0141 -is_a: MOD:00818 -is_a: MOD:00908 +is_a: MOD:00818 ! glycosylphosphatidylinositolated residue +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:00171 @@ -4352,8 +4352,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0142 -is_a: MOD:00818 -is_a: MOD:00916 +is_a: MOD:00818 ! glycosylphosphatidylinositolated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00172 @@ -4372,8 +4372,8 @@ property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0136 -is_a: MOD:00818 -is_a: MOD:00901 +is_a: MOD:00818 ! glycosylphosphatidylinositolated residue +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:00173 @@ -4392,8 +4392,8 @@ property_value: Origin "T" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0143 -is_a: MOD:00818 -is_a: MOD:00917 +is_a: MOD:00818 ! glycosylphosphatidylinositolated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00174 @@ -4412,8 +4412,8 @@ property_value: Origin "G" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0146 -is_a: MOD:00466 -is_a: MOD:00908 +is_a: MOD:00466 ! glycosylsphingolipidinositolated residue +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:00175 @@ -4432,8 +4432,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0147 -is_a: MOD:00466 -is_a: MOD:00916 +is_a: MOD:00466 ! glycosylsphingolipidinositolated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00176 @@ -4459,9 +4459,9 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:395 xref: uniprot.ptm:PTM-0389 -is_a: MOD:00860 -is_a: MOD:00861 -is_a: MOD:00916 +is_a: MOD:00860 ! sulfur containing modified residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00177 @@ -4488,8 +4488,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:213 xref: uniprot.ptm:PTM-0053 -is_a: MOD:00752 -is_a: MOD:00902 +is_a: MOD:00752 ! monoadenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00178 @@ -4516,8 +4516,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:213 xref: uniprot.ptm:PTM-0055 -is_a: MOD:00752 -is_a: MOD:00905 +is_a: MOD:00752 ! monoadenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00179 @@ -4544,7 +4544,7 @@ property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:396 xref: uniprot.ptm:PTM-0403 -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00180 @@ -4570,9 +4570,9 @@ property_value: MassMono "182.966000" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:40 -is_a: MOD:00695 -is_a: MOD:00777 -is_a: MOD:00905 +is_a: MOD:00695 ! sulfated residue +is_a: MOD:00777 ! residues isobaric at 182.96-182.98 Da +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00181 @@ -4604,9 +4604,9 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:40 xref: uniprot.ptm:PTM-0286 -is_a: MOD:00695 -is_a: MOD:00774 -is_a: MOD:00919 +is_a: MOD:00695 ! sulfated residue +is_a: MOD:00774 ! residues isobaric at 243.02-243.03 Da +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00182 @@ -4627,8 +4627,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:340 xref: uniprot.ptm:PTM-0089 -is_a: MOD:01049 -is_a: MOD:01912 +is_a: MOD:01049 ! halogenated histidine +is_a: MOD:01912 ! monobrominated residue [Term] id: MOD:00183 @@ -4651,7 +4651,7 @@ property_value: MassAvg "226.07" xsd:float property_value: MassMono "224.978926" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00972 +is_a: MOD:00972 ! monobrominated L-phenylalanine [Term] id: MOD:00184 @@ -4672,7 +4672,7 @@ property_value: MassAvg "226.07" xsd:float property_value: MassMono "224.978926" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00972 +is_a: MOD:00972 ! monobrominated L-phenylalanine [Term] id: MOD:00185 @@ -4693,7 +4693,7 @@ property_value: MassAvg "226.07" xsd:float property_value: MassMono "224.978926" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00972 +is_a: MOD:00972 ! monobrominated L-phenylalanine [Term] id: MOD:00186 @@ -4724,7 +4724,7 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:397 xref: uniprot.ptm:PTM-0295 -is_a: MOD:00998 +is_a: MOD:00998 ! iodinated tyrosine [Term] id: MOD:00187 @@ -4753,7 +4753,7 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:398 xref: uniprot.ptm:PTM-0294 -is_a: MOD:00998 +is_a: MOD:00998 ! iodinated tyrosine [Term] id: MOD:00188 @@ -4775,8 +4775,8 @@ property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: Unimod:398 xref: uniprot.ptm:PTM-0051 -is_a: MOD:01068 -is_a: MOD:01912 +is_a: MOD:01068 ! halogenated tryptophan +is_a: MOD:01912 ! monobrominated residue [Term] id: MOD:00189 @@ -4806,9 +4806,9 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:23 xref: uniprot.ptm:PTM-0006 -is_a: MOD:00416 -is_a: MOD:00916 -is_a: MOD:01168 +is_a: MOD:00416 ! phosphorylation of an hydroxyl amino acid with prompt loss of phosphate +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01168 ! dehydroalanine [Term] id: MOD:00190 @@ -4832,7 +4832,7 @@ synonym: "Dehydroamino butyric acid" EXACT DeltaMass-label [] synonym: "Dhb" EXACT RESID-alternate [] synonym: "Dhb(Thr)" EXACT PSI-MOD-label [] synonym: "methyl-dehydroalanine" EXACT RESID-alternate [] -synonym: "MOD_RES (Z)-2,3-didehydrobutyrine" EXACT UniProt-feature [] +synonym: "MOD_RES 2,3-didehydrobutyrine" EXACT UniProt-feature [] synonym: "phospholosst" EXACT OMSSA-label [] property_value: DiffAvg "-18.02" xsd:float property_value: DiffFormula "C 0 H -2 N 0 O -1" xsd:string @@ -4844,9 +4844,9 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:23 xref: uniprot.ptm:PTM-0007 -is_a: MOD:00416 -is_a: MOD:00917 -is_a: MOD:01703 +is_a: MOD:00416 ! phosphorylation of an hydroxyl amino acid with prompt loss of phosphate +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01703 ! dehydrobutyrine [Term] id: MOD:00191 @@ -4875,7 +4875,7 @@ property_value: MassMono "161.047678" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0002 -is_a: MOD:00706 +is_a: MOD:00706 ! dehydrogenated tyrosine [Term] id: MOD:00192 @@ -4899,10 +4899,10 @@ property_value: MassMono "126.042927" xsd:float property_value: Origin "G, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0049 -is_a: MOD:02047 -is_a: MOD:02055 -is_a: MOD:01882 -is_a: MOD:00954 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00193 @@ -4928,7 +4928,7 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:402 xref: uniprot.ptm:PTM-0034 -is_a: MOD:01169 +is_a: MOD:01169 ! L-3-oxoalanine [Term] id: MOD:00194 @@ -4952,7 +4952,7 @@ property_value: Origin "S" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:403 xref: uniprot.ptm:PTM-0163 -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00195 @@ -4976,10 +4976,10 @@ property_value: MassMono "110.048013" xsd:float property_value: Origin "A, G" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0045 -is_a: MOD:02040 -is_a: MOD:02047 -is_a: MOD:01882 -is_a: MOD:00954 +is_a: MOD:02040 ! crosslinked L-alanine residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00196 @@ -5003,10 +5003,10 @@ property_value: MassMono "142.020084" xsd:float property_value: Origin "C, G" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0047 -is_a: MOD:02044 -is_a: MOD:02047 -is_a: MOD:01882 -is_a: MOD:00954 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00197 @@ -5031,9 +5031,9 @@ property_value: MassMono "165.053826" xsd:float property_value: Origin "G, Q" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0013 -is_a: MOD:02046 -is_a: MOD:02047 -is_a: MOD:01882 +is_a: MOD:02046 ! crosslinked L-glutamine residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) [Term] id: MOD:00198 @@ -5052,9 +5052,9 @@ property_value: MassMono "71.037114" xsd:float property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0112 -is_a: MOD:00570 -is_a: MOD:00862 -is_a: MOD:00901 +is_a: MOD:00570 ! residues isobaric at 71.037114 Da +is_a: MOD:00862 ! D-alanine +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:00199 @@ -5078,9 +5078,9 @@ property_value: MassMono "113.084064" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0114 -is_a: MOD:00306 -is_a: MOD:00664 -is_a: MOD:00910 +is_a: MOD:00306 ! residues isobaric at 113.084064 Da +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00910 ! modified L-isoleucine residue [Term] id: MOD:00200 @@ -5101,8 +5101,8 @@ property_value: MassMono "131.040485" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0120 -is_a: MOD:00664 -is_a: MOD:00913 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00201 @@ -5121,8 +5121,8 @@ property_value: MassMono "147.068414" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0121 -is_a: MOD:00664 -is_a: MOD:00914 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:00202 @@ -5141,8 +5141,8 @@ property_value: MassMono "87.032028" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0308 -is_a: MOD:00891 -is_a: MOD:00916 +is_a: MOD:00891 ! D-serine +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00203 @@ -5164,8 +5164,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0115 -is_a: MOD:00664 -is_a: MOD:00903 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00204 @@ -5185,9 +5185,9 @@ property_value: MassMono "113.084064" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0119 -is_a: MOD:00306 -is_a: MOD:00664 -is_a: MOD:00911 +is_a: MOD:00306 ! residues isobaric at 113.084064 Da +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00911 ! modified L-leucine residue [Term] id: MOD:00205 @@ -5207,8 +5207,8 @@ property_value: MassMono "186.079313" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0123 -is_a: MOD:00664 -is_a: MOD:00918 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00206 @@ -5220,7 +5220,7 @@ synonym: "MOD_RES 5-glutamyl polyglycine" EXACT UniProt-feature [] property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0394 -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00207 @@ -5231,7 +5231,7 @@ synonym: "L-isoglutamyl-polyglutamic acid" EXACT RESID-name [] property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0395 -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00208 @@ -5259,8 +5259,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:405 xref: uniprot.ptm:PTM-0332 -is_a: MOD:00919 -is_a: MOD:01165 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01165 ! adenylated residue [Term] id: MOD:00209 @@ -5281,8 +5281,8 @@ property_value: MassMono "143.027909" xsd:float property_value: Origin "C, S" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0268 -is_a: MOD:02055 -is_a: MOD:01850 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01850 ! S-(2-aminovinyl)-D-cysteine [Term] id: MOD:00210 @@ -5318,8 +5318,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 xref: uniprot.ptm:PTM-0107 -is_a: MOD:00708 -is_a: MOD:01854 +is_a: MOD:00708 ! sulfur oxygenated L-cysteine +is_a: MOD:01854 ! sulfur monooxygenated residue [Term] id: MOD:00211 @@ -5343,9 +5343,9 @@ property_value: MassMono "159.022823" xsd:float property_value: Origin "C, G" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0429 -is_a: MOD:00395 -is_a: MOD:02047 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00212 @@ -5368,7 +5368,7 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:407 xref: uniprot.ptm:PTM-0414 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00213 @@ -5380,7 +5380,7 @@ synonym: "chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl synonym: "poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate-D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine; poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-6-sulfate D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine" EXACT RESID-systematic [] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:00214 @@ -5392,7 +5392,7 @@ synonym: "dermatan 4-sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl- synonym: "poly[beta-1,4-L-idopyranuronosyl-alpha-1,3-(2-acetamido-2-deoxy-4-sulfate D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine" EXACT RESID-systematic [] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:00215 @@ -5404,7 +5404,7 @@ synonym: "heparitin sulfate" EXACT RESID-alternate [] synonym: "poly[alpha-1,4-(2-sulfate D-glucopyranuronosyl)-beta-1,4-(2-sulfamino-2-deoxy-6-sulfate D-glucosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine" EXACT RESID-systematic [] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:00216 @@ -5431,8 +5431,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:122 xref: uniprot.ptm:PTM-0192 -is_a: MOD:00409 -is_a: MOD:01875 +is_a: MOD:00409 ! N-formylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00217 @@ -5459,8 +5459,8 @@ property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: Unimod:408 xref: uniprot.ptm:PTM-0545 -is_a: MOD:00396 -is_a: MOD:00915 +is_a: MOD:00396 ! O-glycosylated residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00218 @@ -5474,8 +5474,8 @@ synonym: "O3-L-serine 5'-RNA phosphodiester" EXACT RESID-alternate [] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0227 -is_a: MOD:00751 -is_a: MOD:00916 +is_a: MOD:00751 ! ribonucleic acid linked residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00219 @@ -5508,7 +5508,7 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:7 xref: uniprot.ptm:PTM-0092 -is_a: MOD:00902 +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00220 @@ -5533,8 +5533,8 @@ property_value: MassMono "172.096026" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0042 -is_a: MOD:00425 -is_a: MOD:00682 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00682 ! hydroxylated arginine [Term] id: MOD:00221 @@ -5558,10 +5558,10 @@ property_value: Origin "C, N" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0151 -is_a: MOD:02042 -is_a: MOD:02044 -is_a: MOD:00946 -is_a: MOD:00688 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia +is_a: MOD:00688 ! isopeptide crosslinked residues [Term] id: MOD:00222 @@ -5584,9 +5584,9 @@ property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 xref: uniprot.ptm:PTM-0505 -is_a: MOD:00421 -is_a: MOD:00595 -is_a: MOD:00918 +is_a: MOD:00421 ! C-glycosylated residue +is_a: MOD:00595 ! monomannosylated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00223 @@ -5598,8 +5598,8 @@ synonym: "N6-mureinyl-L-lysine" EXACT RESID-name [] property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0195 -is_a: MOD:01159 -is_a: MOD:01875 +is_a: MOD:01159 ! peptidoglycanated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00224 @@ -5613,7 +5613,7 @@ synonym: "protein-glycosaminoglycan-protein cross-link" EXACT RESID-alternate [] property_value: Origin "D" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0334 -is_a: MOD:00904 +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:00225 @@ -5638,8 +5638,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:409 xref: uniprot.ptm:PTM-0271 -is_a: MOD:02084 -is_a: MOD:00905 +is_a: MOD:02084 ! 6-FMN modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00226 @@ -5669,8 +5669,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:50 xref: uniprot.ptm:PTM-0288 -is_a: MOD:00895 -is_a: MOD:00909 +is_a: MOD:00895 ! FAD modified residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:00227 @@ -5699,8 +5699,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:21 xref: uniprot.ptm:PTM-0250 -is_a: MOD:00902 -is_a: MOD:01456 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:01456 ! N-phosphorylated residue [Term] id: MOD:00228 @@ -5726,8 +5726,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:410 xref: uniprot.ptm:PTM-0273 -is_a: MOD:00905 -is_a: MOD:01155 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00229 @@ -5744,7 +5744,7 @@ property_value: MassAvg "204.26" xsd:float property_value: MassMono "204.002720" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02044 +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:00230 @@ -5765,9 +5765,9 @@ property_value: MassAvg "652.34" xsd:float property_value: MassMono "651.920007" xsd:float property_value: Origin "C, C, H, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00231 @@ -5787,8 +5787,8 @@ property_value: MassAvg "1140.22" xsd:float property_value: MassMono "1139.450758" xsd:float property_value: Origin "C, C, C, C, C, C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00232 @@ -5816,8 +5816,8 @@ property_value: MassMono "457.147483" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:405 -is_a: MOD:00912 -is_a: MOD:01165 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01165 ! adenylated residue [Term] id: MOD:00233 @@ -5848,14 +5848,13 @@ property_value: MassMono "473.142397" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:413 -is_a: MOD:00912 -is_a: MOD:01163 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01163 ! guanylated residue [Term] id: MOD:00234 name: L-cysteine glutathione disulfide def: "A protein modification that effectively converts an L-cysteine residue to S-glutathionyl-L-cysteine." [ChEBI:21264, DeltaMass:0, OMSSA:51, PubMed:3083866, PubMed:8344916, RESID:AA0229, Unimod:55] -comment: From DeltaMass: Average Mass: 305 comment: Glutamyl-transpeptidase cleaves glutathione into cysteinylglycine (Cys-Gly) and a Glu residue. [PubMed: 28537416] subset: PSI-MOD-slim synonym: "(2S)-2-amino-3-((2S)-2-((4R)-4-amino-4-carboxyl-1-oxobutyl)amino-3-(carboxylmethyl)amino-3-oxo-propyl)dithio-propanoic acid" EXACT RESID-systematic [] @@ -5879,9 +5878,9 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:55 xref: uniprot.ptm:PTM-0311 -is_a: MOD:00905 -is_a: MOD:01862 -relationship: contains MOD:02026 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01862 ! disulfide conjugated residue +relationship: contains MOD:02026 ! S-(cysteinyl-glycyl)-L-cysteine [Term] id: MOD:00235 @@ -5906,8 +5905,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:275 xref: uniprot.ptm:PTM-0280 -is_a: MOD:00905 -is_a: MOD:02077 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:02077 ! nitrosylated residue [Term] id: MOD:00236 @@ -5930,8 +5929,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:213 xref: uniprot.ptm:PTM-0054 -is_a: MOD:00752 -is_a: MOD:00903 +is_a: MOD:00752 ! monoadenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00237 @@ -5960,8 +5959,8 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: Unimod:39 xref: uniprot.ptm:PTM-0032 -is_a: MOD:00904 -is_a: MOD:01153 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01153 ! methylthiolated residue [Term] id: MOD:00238 @@ -5984,9 +5983,9 @@ property_value: MassMono "303.121906" xsd:float property_value: Origin "K, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0171 -is_a: MOD:00692 -is_a: MOD:02051 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00239 @@ -6012,8 +6011,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0636 -is_a: MOD:00654 -is_a: MOD:01682 +is_a: MOD:00654 ! S-methylated residue +is_a: MOD:01682 ! monomethylated L-cysteine [Term] id: MOD:00240 @@ -6036,7 +6035,7 @@ property_value: MassMono "144.089878" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: uniprot.ptm:PTM-0664 -is_a: MOD:01047 +is_a: MOD:01047 ! monohydroxylated lysine [Term] id: MOD:00241 @@ -6060,7 +6059,7 @@ property_value: MassMono "144.053492" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:414 -is_a: MOD:00903 +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00242 @@ -6086,8 +6085,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:213 xref: uniprot.ptm:PTM-0056 -is_a: MOD:00752 -is_a: MOD:00916 +is_a: MOD:00752 ! monoadenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00243 @@ -6107,9 +6106,9 @@ property_value: MassMono "170.014998" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0376 -is_a: MOD:02044 -is_a: MOD:01421 -is_a: MOD:02082 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:01421 ! oxazole/oxazoline ring crosslinked residues (Ser) +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:00244 @@ -6129,9 +6128,9 @@ property_value: MassMono "172.030649" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0381 -is_a: MOD:02044 -is_a: MOD:01421 -is_a: MOD:00954 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:01421 ! oxazole/oxazoline ring crosslinked residues (Ser) +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00245 @@ -6151,9 +6150,9 @@ property_value: MassMono "124.027277" xsd:float property_value: Origin "G, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0377 -is_a: MOD:02047 -is_a: MOD:01421 -is_a: MOD:02082 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01421 ! oxazole/oxazoline ring crosslinked residues (Ser) +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:00246 @@ -6173,9 +6172,9 @@ property_value: MassMono "140.004434" xsd:float property_value: Origin "C, G" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0378 -is_a: MOD:02047 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:00247 @@ -6195,9 +6194,9 @@ property_value: MassMono "170.014998" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0363 -is_a: MOD:02055 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:00248 @@ -6217,9 +6216,9 @@ property_value: MassMono "230.051384" xsd:float property_value: Origin "C, F" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0375 -is_a: MOD:02053 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:00249 @@ -6239,8 +6238,8 @@ property_value: MassMono "185.992155" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0360 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:00250 @@ -6258,9 +6257,9 @@ property_value: MassAvg "211.28" xsd:float property_value: MassMono "211.077933" xsd:float property_value: Origin "C, K" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:02051 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:00251 @@ -6275,8 +6274,8 @@ synonym: "O3-L-serine 5'-DNA phosphodiester" EXACT RESID-alternate [] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0226 -is_a: MOD:00750 -is_a: MOD:00916 +is_a: MOD:00750 ! deoxyribonucleic acid linked residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00252 @@ -6287,7 +6286,7 @@ synonym: "keratosulfate" EXACT RESID-alternate [] synonym: "poly[beta-1,4-(2-acetamido-2-deoxy-6-sulfate D-glucosyl)-beta-1,3-D-galactosyl]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-threonine" EXACT RESID-systematic [] property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00005 +is_a: MOD:00005 ! O-glycosyl-L-threonine [Term] id: MOD:00253 @@ -6302,8 +6301,8 @@ property_value: MassMono "1723.939410" xsd:float property_value: Origin "U" xsd:string property_value: Source "natural" xsd:string xref: Unimod:415 -is_a: MOD:00744 -is_a: MOD:01158 +is_a: MOD:00744 ! molybdenum pterin containing modification +is_a: MOD:01158 ! modified L-selenocysteine residue [Term] id: MOD:00254 @@ -6316,8 +6315,8 @@ synonym: "O4'-L-tyrosine 5'-RNA phosphodiester" EXACT RESID-alternate [] property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0229 -is_a: MOD:00751 -is_a: MOD:00919 +is_a: MOD:00751 ! ribonucleic acid linked residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00255 @@ -6341,9 +6340,9 @@ property_value: MassMono "298.106590" xsd:float property_value: Origin "H, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0027 -is_a: MOD:00692 -is_a: MOD:02048 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02048 ! crosslinked L-histidine residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00256 @@ -6372,8 +6371,8 @@ property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string xref: Unimod:425 xref: uniprot.ptm:PTM-0175 -is_a: MOD:00709 -is_a: MOD:01855 +is_a: MOD:00709 ! sulfur oxygenated L-methionine +is_a: MOD:01855 ! sulfur dioxygenated residue [Term] id: MOD:00257 @@ -6399,7 +6398,7 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:416 xref: uniprot.ptm:PTM-0421 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00258 @@ -6421,8 +6420,8 @@ property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0267 -is_a: MOD:00687 -is_a: MOD:02056 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:02056 ! crosslinked L-threonine residue [Term] id: MOD:00259 @@ -6436,8 +6435,8 @@ synonym: "O4'-L-tyrosine 5'-DNA phosphodiester" EXACT RESID-alternate [] property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0228 -is_a: MOD:00750 -is_a: MOD:00919 +is_a: MOD:00750 ! deoxyribonucleic acid linked residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00260 @@ -6455,8 +6454,8 @@ property_value: MassAvg "180.08" xsd:float property_value: MassMono "180.006184" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00750 -is_a: MOD:00917 +is_a: MOD:00750 ! deoxyribonucleic acid linked residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00261 @@ -6484,8 +6483,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:417 xref: uniprot.ptm:PTM-0333 -is_a: MOD:00919 -is_a: MOD:01166 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01166 ! uridylated residue [Term] id: MOD:00262 @@ -6505,8 +6504,8 @@ property_value: MassMono "292.105922" xsd:float property_value: Origin "E, Y" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:02045 -is_a: MOD:00919 +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00263 @@ -6533,8 +6532,8 @@ property_value: MassMono "689.288320" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:387 -is_a: MOD:00700 -is_a: MOD:00905 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00264 @@ -6555,8 +6554,8 @@ property_value: MassAvg "792.97" xsd:float property_value: MassMono "792.297505" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00700 -is_a: MOD:02044 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:00265 @@ -6577,8 +6576,8 @@ property_value: MassAvg "792.97" xsd:float property_value: MassMono "792.297505" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00700 -is_a: MOD:02044 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:00266 @@ -6587,7 +6586,7 @@ def: "A protein modification that effectively forms a peptide bond between a C-t property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00267 @@ -6621,8 +6620,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:425 xref: uniprot.ptm:PTM-0108 -is_a: MOD:00708 -is_a: MOD:01855 +is_a: MOD:00708 ! sulfur oxygenated L-cysteine +is_a: MOD:01855 ! sulfur dioxygenated residue [Term] id: MOD:00268 @@ -6647,8 +6646,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:425 xref: uniprot.ptm:PTM-0667 -is_a: MOD:00428 -is_a: MOD:00707 +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:00707 ! hydroxylated tyrosine [Term] id: MOD:00269 @@ -6675,7 +6674,7 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:419 xref: uniprot.ptm:PTM-0230 -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00270 @@ -6702,7 +6701,7 @@ property_value: MassMono "72.998620" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0004 -is_a: MOD:01625 +is_a: MOD:01625 ! 1-thioglycine [Term] id: MOD:00271 @@ -6721,9 +6720,9 @@ property_value: MassAvg "983.94" xsd:float property_value: MassMono "983.243341" xsd:float property_value: Origin "C, C, Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00699 -is_a: MOD:02067 -is_a: MOD:02075 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02075 ! metal or metal cluster coordinated L-tyrosine residue [Term] id: MOD:00272 @@ -6752,8 +6751,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:405 xref: uniprot.ptm:PTM-0393 -is_a: MOD:00917 -is_a: MOD:01165 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01165 ! adenylated residue [Term] id: MOD:00273 @@ -6776,10 +6775,10 @@ property_value: MassAvg "1168.43" xsd:float property_value: MassMono "1167.766769" xsd:float property_value: Origin "C, C, C, C, E, E, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02068 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00274 @@ -6811,8 +6810,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:421 xref: uniprot.ptm:PTM-0106 -is_a: MOD:00905 -is_a: MOD:01886 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01886 ! thiolated residue [Term] id: MOD:00275 @@ -6836,9 +6835,9 @@ property_value: MassMono "298.106590" xsd:float property_value: Origin "H, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0003 -is_a: MOD:00692 -is_a: MOD:02048 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02048 ! crosslinked L-histidine residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00276 @@ -6857,9 +6856,9 @@ property_value: MassAvg "948.94" xsd:float property_value: MassMono "948.274976" xsd:float property_value: Origin "C, C, K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00699 -is_a: MOD:02067 -is_a: MOD:02074 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02074 ! metal or metal cluster coordinated L-lysine residue [Term] id: MOD:00277 @@ -6884,8 +6883,8 @@ property_value: MassMono "170.116761" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0050 -is_a: MOD:00414 -is_a: MOD:00656 +is_a: MOD:00414 ! monomethylated L-arginine +is_a: MOD:00656 ! C-methylated residue [Term] id: MOD:00278 @@ -6909,8 +6908,8 @@ property_value: MassMono "142.074228" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0016 -is_a: MOD:00656 -is_a: MOD:00722 +is_a: MOD:00656 ! C-methylated residue +is_a: MOD:00722 ! monomethylated L-glutamine [Term] id: MOD:00279 @@ -6933,8 +6932,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:422 xref: uniprot.ptm:PTM-0224 -is_a: MOD:00905 -is_a: MOD:01170 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01170 ! pyruvic acid iminylated residue [Term] id: MOD:00280 @@ -6957,8 +6956,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:422 xref: uniprot.ptm:PTM-0225 -is_a: MOD:00920 -is_a: MOD:01170 +is_a: MOD:00920 ! modified L-valine residue +is_a: MOD:01170 ! pyruvic acid iminylated residue [Term] id: MOD:00281 @@ -6980,8 +6979,8 @@ property_value: MassAvg "753.64" xsd:float property_value: MassMono "753.236205" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00699 -is_a: MOD:02070 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00282 @@ -7009,9 +7008,9 @@ property_value: Origin "C" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:423 xref: uniprot.ptm:PTM-0282 -is_a: MOD:00745 -is_a: MOD:00778 -is_a: MOD:00905 +is_a: MOD:00745 ! selenium containing residue +is_a: MOD:00778 ! residues isobaric at 182.9-183.0 Da +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00283 @@ -7026,7 +7025,7 @@ synonym: "silaffin polycationic lysine derivative" EXACT RESID-alternate [] property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0198 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00284 @@ -7046,9 +7045,9 @@ property_value: MassAvg "856.67" xsd:float property_value: MassMono "856.215529" xsd:float property_value: Origin "D, E" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00699 -is_a: MOD:02066 -is_a: MOD:02068 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue [Term] id: MOD:00285 @@ -7069,10 +7068,10 @@ property_value: MassAvg "988.87" xsd:float property_value: MassMono "988.263290" xsd:float property_value: Origin "D, E, M" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00699 -is_a: MOD:02066 -is_a: MOD:02068 -is_a: MOD:02071 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue +is_a: MOD:02071 ! metal or metal cluster coordinated L-methionine residue [Term] id: MOD:00286 @@ -7092,8 +7091,8 @@ property_value: MassMono "1675.994960" xsd:float property_value: Origin "C" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:424 -is_a: MOD:02067 -is_a: MOD:01167 +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:01167 ! molybdopterin guanine dinucleotide [Term] id: MOD:00287 @@ -7121,7 +7120,7 @@ property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: Unimod:425 xref: uniprot.ptm:PTM-0306 -is_a: MOD:00866 +is_a: MOD:00866 ! dihydroxylated proline [Term] id: MOD:00288 @@ -7144,9 +7143,9 @@ property_value: MassMono "330.012415" xsd:float property_value: Origin "E, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0263 -is_a: MOD:00692 -is_a: MOD:02045 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00289 @@ -7166,9 +7165,9 @@ property_value: MassAvg "794.15" xsd:float property_value: MassMono "793.684297" xsd:float property_value: Origin "C, C, C, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00290 @@ -7188,9 +7187,9 @@ property_value: MassAvg "794.15" xsd:float property_value: MassMono "793.684297" xsd:float property_value: Origin "C, C, C, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00291 @@ -7209,9 +7208,9 @@ property_value: MassAvg "772.09" xsd:float property_value: MassMono "771.652328" xsd:float property_value: Origin "C, C, C, D" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02066 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00292 @@ -7231,8 +7230,8 @@ property_value: MassMono "198.100442" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:422 -is_a: MOD:00912 -is_a: MOD:01170 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01170 ! pyruvic acid iminylated residue [Term] id: MOD:00293 @@ -7250,9 +7249,9 @@ property_value: MassAvg "744.08" xsd:float property_value: MassMono "743.657414" xsd:float property_value: Origin "C, C, C, S" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02072 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02072 ! metal or metal cluster coordinated L-serine residue [Term] id: MOD:00294 @@ -7272,10 +7271,10 @@ property_value: MassAvg "778.09" xsd:float property_value: MassMono "777.707141" xsd:float property_value: Origin "C, C, H, S" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02070 -is_a: MOD:02072 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue +is_a: MOD:02072 ! metal or metal cluster coordinated L-serine residue [Term] id: MOD:00295 @@ -7301,8 +7300,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:426 xref: uniprot.ptm:PTM-0239 -is_a: MOD:00669 -is_a: MOD:02003 +is_a: MOD:00669 ! O-octanoylated residue +is_a: MOD:02003 ! O3-acylated L-serine [Term] id: MOD:00296 @@ -7325,8 +7324,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:54 xref: uniprot.ptm:PTM-0577 -is_a: MOD:00447 -is_a: MOD:00916 +is_a: MOD:00447 ! N-glucuronylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00297 @@ -7346,11 +7345,11 @@ property_value: MassAvg "1171.28" xsd:float property_value: MassMono "1169.767174" xsd:float property_value: Origin "C, C, C, C, E, E, H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00739 -is_a: MOD:00741 -is_a: MOD:02067 -is_a: MOD:02068 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:00741 ! nickel containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00298 @@ -7370,12 +7369,12 @@ property_value: MassAvg "1129.24" xsd:float property_value: MassMono "1127.756609" xsd:float property_value: Origin "C, C, C, C, E, H, S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00739 -is_a: MOD:00741 -is_a: MOD:02067 -is_a: MOD:02068 -is_a: MOD:02070 -is_a: MOD:02072 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:00741 ! nickel containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue +is_a: MOD:02072 ! metal or metal cluster coordinated L-serine residue [Term] id: MOD:00299 @@ -7399,9 +7398,9 @@ property_value: MassMono "225.111341" xsd:float property_value: Origin "K, N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0153 -is_a: MOD:02042 -is_a: MOD:00946 -is_a: MOD:01929 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia +is_a: MOD:01929 ! N6-(L-isoaspartyl)-L-lysine [Term] id: MOD:00300 @@ -7417,8 +7416,8 @@ synonym: "O-ADP-ribosylation (on Glutamate or C terminus)" EXACT DeltaMass-label property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:213 -is_a: MOD:02087 -is_a: MOD:00906 +is_a: MOD:02087 ! adenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00301 @@ -7443,8 +7442,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:428 xref: uniprot.ptm:PTM-0586 -is_a: MOD:00916 -is_a: MOD:01804 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01804 ! glycosylphosphorylated residue [Term] id: MOD:00302 @@ -7468,8 +7467,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:429 xref: uniprot.ptm:PTM-0594 -is_a: MOD:00916 -is_a: MOD:01804 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01804 ! glycosylphosphorylated residue [Term] id: MOD:00303 @@ -7488,9 +7487,9 @@ property_value: MassAvg "1256.19" xsd:float property_value: MassMono "1253.050808" xsd:float property_value: Origin "H, H, H, H, H, H, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00742 -is_a: MOD:00860 -is_a: MOD:02070 +is_a: MOD:00742 ! copper containing modified residue +is_a: MOD:00860 ! sulfur containing modified residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00304 @@ -7519,9 +7518,9 @@ property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0167 -is_a: MOD:00599 -is_a: MOD:00662 -is_a: MOD:01689 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00662 ! methylated leucine +is_a: MOD:01689 ! alpha-carboxyl methylated residue [Term] id: MOD:00305 @@ -7541,9 +7540,9 @@ property_value: MassAvg "1369.03" xsd:float property_value: MassMono "1368.310179" xsd:float property_value: Origin "C, C, C, C, C, C, S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02072 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02072 ! metal or metal cluster coordinated L-serine residue [Term] id: MOD:00306 @@ -7559,8 +7558,8 @@ property_value: Formula "C 6 H 11 N 1 O 1" xsd:string property_value: MassAvg "113.16" xsd:float property_value: MassMono "113.084064" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00569 -is_a: MOD:00624 +is_a: MOD:00569 ! residues isobaric at a resolution below 0.000001 Da +is_a: MOD:00624 ! residues isobaric at 113.0-113.1 Da [Term] id: MOD:00307 @@ -7588,9 +7587,9 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:23 -is_a: MOD:00601 -is_a: MOD:00704 -is_a: MOD:00903 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00704 ! dehydrated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00308 @@ -7613,9 +7612,9 @@ property_value: Origin "Q" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:23 -is_a: MOD:00601 -is_a: MOD:00704 -is_a: MOD:00907 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00704 ! dehydrated residue +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:00309 @@ -7641,8 +7640,8 @@ property_value: MassMono "159.016772" xsd:float property_value: Origin "D" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:299 -is_a: MOD:00904 -is_a: MOD:01152 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01152 ! carboxylated residue [Term] id: MOD:00310 @@ -7666,8 +7665,8 @@ property_value: MassMono "170.116761" xsd:float property_value: Origin "R" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0185 -is_a: MOD:00414 -is_a: MOD:00602 +is_a: MOD:00414 ! monomethylated L-arginine +is_a: MOD:00602 ! N-methylated residue [Term] id: MOD:00311 @@ -7689,9 +7688,9 @@ property_value: MassMono "868.108744" xsd:float property_value: Origin "C" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:281 -is_a: MOD:00861 -is_a: MOD:00905 -is_a: MOD:01862 +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01862 ! disulfide conjugated residue [Term] id: MOD:00312 @@ -7715,8 +7714,8 @@ property_value: MassMono "313.207550" xsd:float property_value: Origin "C" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:45 -is_a: MOD:00655 -is_a: MOD:00905 +is_a: MOD:00655 ! S-myristoylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00313 @@ -7740,8 +7739,8 @@ property_value: Origin "C" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:431 xref: uniprot.ptm:PTM-0645 -is_a: MOD:02002 -is_a: MOD:00905 +is_a: MOD:02002 ! S-palmitoleylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00314 @@ -7767,8 +7766,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:432 xref: uniprot.ptm:PTM-0090 -is_a: MOD:00908 -is_a: MOD:01155 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00315 @@ -7789,10 +7788,10 @@ property_value: MassAvg "1089.16" xsd:float property_value: MassMono "1087.593333" xsd:float property_value: Origin "C, C, C, C, C, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:00741 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:00741 ! nickel containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00316 @@ -7818,9 +7817,9 @@ property_value: Origin "N" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:36 xref: uniprot.ptm:PTM-0182 -is_a: MOD:00429 -is_a: MOD:00602 -is_a: MOD:00673 +is_a: MOD:00429 ! dimethylated residue +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00673 ! methylated asparagine [Term] id: MOD:00317 @@ -7841,7 +7840,7 @@ property_value: MassMono "392.282764" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:433 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00318 @@ -7864,8 +7863,8 @@ property_value: MassMono "317.047027" xsd:float property_value: Origin "C, W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0041 -is_a: MOD:00687 -is_a: MOD:02057 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:02057 ! crosslinked L-tryptophan residue [Term] id: MOD:00319 @@ -7886,8 +7885,8 @@ property_value: MassMono "216.020478" xsd:float property_value: Origin "C, D" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0025 -is_a: MOD:02043 -is_a: MOD:01993 +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:01993 ! beta-carbon thioether crosslinked residues [Term] id: MOD:00320 @@ -7907,8 +7906,8 @@ property_value: MassMono "230.036128" xsd:float property_value: Origin "C, E" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0040 -is_a: MOD:00687 -is_a: MOD:02045 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:02045 ! crosslinked L-glutamic acid residue [Term] id: MOD:00321 @@ -7930,8 +7929,8 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: Unimod:434 xref: uniprot.ptm:PTM-0091 -is_a: MOD:00904 -is_a: MOD:01155 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00322 @@ -7959,8 +7958,8 @@ property_value: MassMono "151.074562" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0290 -is_a: MOD:02038 -is_a: MOD:00724 +is_a: MOD:02038 ! monomethylated L-histidine +is_a: MOD:00724 ! N-methylated L-histidine [Term] id: MOD:00323 @@ -7988,8 +7987,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0170 -is_a: MOD:01683 -is_a: MOD:01689 +is_a: MOD:01683 ! monomethylated L-lysine +is_a: MOD:01689 ! alpha-carboxyl methylated residue [Term] id: MOD:00324 @@ -8006,8 +8005,8 @@ property_value: MassAvg "1675.09" xsd:float property_value: MassMono "1676.012718" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00744 -is_a: MOD:02072 +is_a: MOD:00744 ! molybdenum pterin containing modification +is_a: MOD:02072 ! metal or metal cluster coordinated L-serine residue [Term] id: MOD:00325 @@ -8030,8 +8029,8 @@ property_value: MassMono "160.030649" xsd:float property_value: Origin "N" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:39 -is_a: MOD:00903 -is_a: MOD:01153 +is_a: MOD:00903 ! modified L-asparagine residue +is_a: MOD:01153 ! methylthiolated residue [Term] id: MOD:00326 @@ -8056,7 +8055,7 @@ property_value: MassMono "237.147727" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:435 -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00327 @@ -8078,7 +8077,7 @@ property_value: MassMono "202.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0031 -is_a: MOD:01622 +is_a: MOD:01622 ! monohydroxylated tryptophan [Term] id: MOD:00328 @@ -8090,8 +8089,8 @@ synonym: "O4'-(phospho-3'-DNA)-L-tyrosine" EXACT RESID-name [] synonym: "O4'-L-tyrosine 3'-DNA phosphodiester" EXACT RESID-alternate [] property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00750 -is_a: MOD:00919 +is_a: MOD:00750 ! deoxyribonucleic acid linked residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00329 @@ -8113,8 +8112,8 @@ property_value: MassMono "743.204236" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:436 -is_a: MOD:00699 -is_a: MOD:02068 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue [Term] id: MOD:00330 @@ -8139,8 +8138,8 @@ property_value: MassMono "482.106346" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:413 -is_a: MOD:00909 -is_a: MOD:01163 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01163 ! guanylated residue [Term] id: MOD:00331 @@ -8162,8 +8161,8 @@ property_value: MassAvg "704.30" xsd:float property_value: MassMono "703.700181" xsd:float property_value: Origin "C, C, C, C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00332 @@ -8187,8 +8186,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 xref: uniprot.ptm:PTM-0515 -is_a: MOD:00433 -is_a: MOD:01980 +is_a: MOD:00433 ! monoglucosylated residue +is_a: MOD:01980 ! omega-N-glycosyl-L-arginine [Term] id: MOD:00333 @@ -8214,8 +8213,8 @@ property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:437 xref: uniprot.ptm:PTM-0335 -is_a: MOD:00701 -is_a: MOD:00903 +is_a: MOD:00701 ! nucleotide or nucleic acid modified residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00334 @@ -8240,8 +8239,8 @@ property_value: MassMono "753.236205" xsd:float property_value: Origin "H" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:390 -is_a: MOD:00699 -is_a: MOD:02070 +is_a: MOD:00699 ! porphyrin modified residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00335 @@ -8263,9 +8262,9 @@ property_value: MassMono "202.041213" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0069 -is_a: MOD:02056 -is_a: MOD:01993 -relationship: has_functional_parent MOD:01981 +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01993 ! beta-carbon thioether crosslinked residues +relationship: has_functional_parent MOD:01981 ! 3-methyllanthionine [Term] id: MOD:00336 @@ -8284,9 +8283,9 @@ property_value: MassAvg "596.28" xsd:float property_value: MassMono "595.838311" xsd:float property_value: Origin "C, C, C, D" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:02066 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00337 @@ -8314,8 +8313,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:5 xref: uniprot.ptm:PTM-0649 -is_a: MOD:00398 -is_a: MOD:00905 +is_a: MOD:00398 ! carbamoylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00338 @@ -8340,8 +8339,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:438 xref: uniprot.ptm:PTM-0650 -is_a: MOD:00893 -is_a: MOD:00905 +is_a: MOD:00893 ! residues isobaric at 128.0-128.1 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00339 @@ -8363,8 +8362,8 @@ property_value: MassMono "445.796098" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:439 -is_a: MOD:00738 -is_a: MOD:02067 +is_a: MOD:00738 ! iron containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00340 @@ -8390,7 +8389,7 @@ property_value: MassMono "145.030983" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:440 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00341 @@ -8414,8 +8413,8 @@ property_value: MassMono "127.099714" xsd:float property_value: Origin "I" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0215 -is_a: MOD:00715 -is_a: MOD:01680 +is_a: MOD:00715 ! methylated isoleucine +is_a: MOD:01680 ! alpha-amino monomethylated residue [Term] id: MOD:00342 @@ -8440,8 +8439,8 @@ property_value: MassMono "127.099714" xsd:float property_value: Origin "L" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0216 -is_a: MOD:01680 -is_a: MOD:01808 +is_a: MOD:01680 ! alpha-amino monomethylated residue +is_a: MOD:01808 ! N-methylated leucine [Term] id: MOD:00343 @@ -8465,8 +8464,8 @@ property_value: MassMono "177.078979" xsd:float property_value: Origin "Y" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0220 -is_a: MOD:00718 -is_a: MOD:01680 +is_a: MOD:00718 ! methylated tyrosine +is_a: MOD:01680 ! alpha-amino monomethylated residue [Term] id: MOD:00344 @@ -8493,8 +8492,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0223 -is_a: MOD:00908 -is_a: MOD:01685 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01685 ! alpha-amino palmitoylated residue [Term] id: MOD:00345 @@ -8515,8 +8514,8 @@ property_value: MassMono "248.061949" xsd:float property_value: Origin "C, F" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0012 -is_a: MOD:02053 -is_a: MOD:01992 +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:00346 @@ -8537,9 +8536,9 @@ property_value: MassMono "248.061949" xsd:float property_value: Origin "C, F" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0011 -is_a: MOD:00664 -is_a: MOD:02053 -is_a: MOD:01992 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:00347 @@ -8560,9 +8559,9 @@ property_value: MassMono "202.041213" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0010 -is_a: MOD:00664 -is_a: MOD:02056 -is_a: MOD:01992 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:00348 @@ -8584,8 +8583,8 @@ property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0374 -is_a: MOD:00901 -is_a: MOD:01679 +is_a: MOD:00901 ! modified L-alanine residue +is_a: MOD:01679 ! alpha-aminocarbamoylated residue [Term] id: MOD:00349 @@ -8608,9 +8607,9 @@ property_value: MassMono "188.025563" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0037 -is_a: MOD:02044 -is_a: MOD:02055 -is_a: MOD:01861 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01861 ! isothiazolidinone ring crosslinked residues [Term] id: MOD:00350 @@ -8623,8 +8622,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0246 -is_a: MOD:00917 -is_a: MOD:01159 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01159 ! peptidoglycanated residue [Term] id: MOD:00351 @@ -8644,8 +8643,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0249 -is_a: MOD:00908 -is_a: MOD:01155 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00352 @@ -8664,8 +8663,8 @@ property_value: MassMono "888.789439" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0236 -is_a: MOD:00907 -is_a: MOD:01155 +is_a: MOD:00907 ! modified L-glutamine residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00353 @@ -8684,10 +8683,10 @@ property_value: MassMono "477.159103" xsd:float property_value: Origin "M, W, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0328 -is_a: MOD:00692 -is_a: MOD:02052 -is_a: MOD:02057 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02052 ! crosslinked L-methionine residue +is_a: MOD:02057 ! crosslinked L-tryptophan residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00354 @@ -8712,8 +8711,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:442 xref: uniprot.ptm:PTM-0126 -is_a: MOD:00917 -is_a: MOD:01164 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01164 ! riboflavin-phosphorylated residue [Term] id: MOD:00355 @@ -8738,8 +8737,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:442 xref: uniprot.ptm:PTM-0125 -is_a: MOD:00916 -is_a: MOD:01164 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01164 ! riboflavin-phosphorylated residue [Term] id: MOD:00356 @@ -8764,8 +8763,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:443 xref: uniprot.ptm:PTM-0270 -is_a: MOD:02083 -is_a: MOD:00905 +is_a: MOD:02083 ! 4alpha-FMN modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00357 @@ -8792,8 +8791,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:409 xref: uniprot.ptm:PTM-0289 -is_a: MOD:02085 -is_a: MOD:00909 +is_a: MOD:02085 ! 8alpha-FMN modified residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:00358 @@ -8819,8 +8818,8 @@ property_value: MassMono "591.147877" xsd:float property_value: Origin "H" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:409 -is_a: MOD:02085 -is_a: MOD:00909 +is_a: MOD:02085 ! 8alpha-FMN modified residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:00359 @@ -8846,8 +8845,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0180 -is_a: MOD:00902 -is_a: MOD:01458 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00360 @@ -8867,10 +8866,10 @@ property_value: MassMono "1025.844039" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:444 -is_a: MOD:00742 -is_a: MOD:00744 -is_a: MOD:00860 -is_a: MOD:02067 +is_a: MOD:00742 ! copper containing modified residue +is_a: MOD:00744 ! molybdenum pterin containing modification +is_a: MOD:00860 ! sulfur containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00361 @@ -8889,8 +8888,8 @@ property_value: MassAvg "1056.45" xsd:float property_value: MassMono "1055.769901" xsd:float property_value: Origin "C, C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00362 @@ -8909,9 +8908,9 @@ property_value: MassAvg "638.39" xsd:float property_value: MassMono "637.920304" xsd:float property_value: Origin "C, C, C, R" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02076 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02076 ! metal or metal cluster coordinated L-arginine residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:00363 @@ -8932,8 +8931,8 @@ property_value: MassMono "251.947170" xsd:float property_value: Origin "C, U" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0109 -is_a: MOD:02061 -is_a: MOD:01627 +is_a: MOD:02061 ! crosslinked L-selenocysteine residue +is_a: MOD:01627 ! L-cysteinyl-L-selenocysteine [Term] id: MOD:00364 @@ -8966,10 +8965,10 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:445 xref: uniprot.ptm:PTM-0186 -is_a: MOD:00602 -is_a: MOD:00912 -relationship: has_functional_parent MOD:00037 -relationship: has_functional_parent MOD:00083 +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00912 ! modified L-lysine residue +relationship: has_functional_parent MOD:00037 ! 5-hydroxy-L-lysine +relationship: has_functional_parent MOD:00083 ! N6,N6,N6-trimethyl-L-lysine [Term] id: MOD:00365 @@ -8992,10 +8991,10 @@ property_value: Origin "E, G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0157 -is_a: MOD:00688 -is_a: MOD:02045 -is_a: MOD:02047 -is_a: MOD:00954 +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00366 @@ -9021,9 +9020,9 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:40 xref: uniprot.ptm:PTM-0284 -is_a: MOD:00695 -is_a: MOD:00771 -is_a: MOD:00916 +is_a: MOD:00695 ! sulfated residue +is_a: MOD:00771 ! residues isobaric at 166.98-167.00 Da +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00367 @@ -9049,9 +9048,9 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:40 xref: uniprot.ptm:PTM-0285 -is_a: MOD:00695 -is_a: MOD:00773 -is_a: MOD:00917 +is_a: MOD:00695 ! sulfated residue +is_a: MOD:00773 ! residues isobaric at 181.00-181.02 Da +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00368 @@ -9075,8 +9074,8 @@ property_value: Origin "M" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:299 -is_a: MOD:00913 -is_a: MOD:01152 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01152 ! carboxylated residue [Term] id: MOD:00369 @@ -9103,9 +9102,9 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1 xref: uniprot.ptm:PTM-0232 -is_a: MOD:00644 -is_a: MOD:00647 -is_a: MOD:02003 +is_a: MOD:00644 ! mono O-acetylated residue +is_a: MOD:00647 ! monoacetylated L-serine +is_a: MOD:02003 ! O3-acylated L-serine [Term] id: MOD:00370 @@ -9133,7 +9132,7 @@ property_value: MassMono "161.047678" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0001 -is_a: MOD:00706 +is_a: MOD:00706 ! dehydrogenated tyrosine [Term] id: MOD:00371 @@ -9152,11 +9151,11 @@ property_value: MassAvg "1072.44" xsd:float property_value: MassMono "1071.888057" xsd:float property_value: Origin "D, D, E, E, E, H" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00740 -is_a: MOD:02066 -is_a: MOD:02068 -is_a: MOD:02070 -is_a: MOD:01482 +is_a: MOD:00740 ! manganese containing modified residue +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue +is_a: MOD:01482 ! calcium containing modified residue [Term] id: MOD:00372 @@ -9178,8 +9177,8 @@ property_value: MassAvg "324.34" xsd:float property_value: MassMono "324.111007" xsd:float property_value: Origin "Y, Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00692 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00373 @@ -9202,8 +9201,8 @@ property_value: MassMono "324.111007" xsd:float property_value: Origin "Y, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0155 -is_a: MOD:00692 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00374 @@ -9228,8 +9227,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:425 xref: uniprot.ptm:PTM-0022 -is_a: MOD:00428 -is_a: MOD:00682 +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:00682 ! hydroxylated arginine [Term] id: MOD:00375 @@ -9254,8 +9253,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:425 xref: uniprot.ptm:PTM-0036 -is_a: MOD:00428 -is_a: MOD:00681 +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:00681 ! hydroxylated lysine [Term] id: MOD:00376 @@ -9281,8 +9280,8 @@ property_value: MassMono "466.111432" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:405 -is_a: MOD:00909 -is_a: MOD:01165 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01165 ! adenylated residue [Term] id: MOD:00377 @@ -9310,8 +9309,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:417 xref: uniprot.ptm:PTM-0500 -is_a: MOD:00909 -is_a: MOD:01166 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01166 ! uridylated residue [Term] id: MOD:00378 @@ -9340,8 +9339,8 @@ property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: Unimod:447 xref: uniprot.ptm:PTM-0064 -is_a: MOD:00904 -is_a: MOD:01161 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01161 ! deoxygenated residue [Term] id: MOD:00379 @@ -9364,7 +9363,7 @@ property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:448 xref: uniprot.ptm:PTM-0276 -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00380 @@ -9386,8 +9385,8 @@ property_value: MassMono "1688.012718" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: Unimod:424 -is_a: MOD:02066 -is_a: MOD:01167 +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue +is_a: MOD:01167 ! molybdopterin guanine dinucleotide [Term] id: MOD:00381 @@ -9401,9 +9400,9 @@ property_value: MassAvg "1842.02" xsd:float property_value: MassMono "1841.957004" xsd:float property_value: Origin "U" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00746 -is_a: MOD:00748 -is_a: MOD:02073 +is_a: MOD:00746 ! tungsten containing modified residue +is_a: MOD:00748 ! pterin modified residue +is_a: MOD:02073 ! metal or metal cluster coordinated L-selenocysteine residue [Term] id: MOD:00382 @@ -9424,8 +9423,8 @@ property_value: MassMono "275.085424" xsd:float property_value: Origin "M, Y" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:02052 -is_a: MOD:02058 +is_a: MOD:02052 ! crosslinked L-methionine residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:00383 @@ -9449,9 +9448,9 @@ property_value: MassMono "166.037842" xsd:float property_value: Origin "E, G" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0014 -is_a: MOD:02045 -is_a: MOD:02047 -is_a: MOD:01882 +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) [Term] id: MOD:00384 @@ -9477,9 +9476,9 @@ property_value: MassMono "168.035734" xsd:float property_value: Origin "G, M" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0015 -is_a: MOD:02047 -is_a: MOD:02052 -is_a: MOD:01882 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02052 ! crosslinked L-methionine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) [Term] id: MOD:00385 @@ -9503,10 +9502,10 @@ property_value: MassMono "153.053826" xsd:float property_value: Origin "G, N" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0046 -is_a: MOD:02042 -is_a: MOD:02047 -is_a: MOD:01882 -is_a: MOD:00954 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00386 @@ -9530,10 +9529,10 @@ property_value: MassMono "167.105862" xsd:float property_value: Origin "G, K" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0048 -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:01882 -is_a: MOD:00954 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00387 @@ -9558,9 +9557,9 @@ property_value: Origin "G, K" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0018 -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:01882 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) [Term] id: MOD:00388 @@ -9573,8 +9572,8 @@ property_value: Origin "A" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0245 -is_a: MOD:00901 -is_a: MOD:01159 +is_a: MOD:00901 ! modified L-alanine residue +is_a: MOD:01159 ! peptidoglycanated residue [Term] id: MOD:00389 @@ -9597,9 +9596,9 @@ property_value: Origin "P" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:122 -is_a: MOD:00409 -is_a: MOD:00915 -is_a: MOD:01696 +is_a: MOD:00409 ! N-formylated residue +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:00390 @@ -9624,8 +9623,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:449 xref: uniprot.ptm:PTM-0234 -is_a: MOD:00668 -is_a: MOD:02003 +is_a: MOD:00668 ! O-decanoylated residue +is_a: MOD:02003 ! O3-acylated L-serine [Term] id: MOD:00391 @@ -9651,8 +9650,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:426 xref: uniprot.ptm:PTM-0240 -is_a: MOD:00669 -is_a: MOD:02004 +is_a: MOD:00669 ! O-octanoylated residue +is_a: MOD:02004 ! O3-acylated L-threonine [Term] id: MOD:00392 @@ -9677,8 +9676,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:449 xref: uniprot.ptm:PTM-0235 -is_a: MOD:00668 -is_a: MOD:02004 +is_a: MOD:00668 ! O-decanoylated residue +is_a: MOD:02004 ! O3-acylated L-threonine [Term] id: MOD:00393 @@ -9686,7 +9685,7 @@ name: O-methylated residue def: "A protein modification that effectively replaces a hydroxyl group hydrogen with a methyl group to produce either an ether from an alcohol or an ester from an acid." [PubMed:18688235] subset: PSI-MOD-slim synonym: "OMeRes" EXACT PSI-MOD-label [] -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00394 @@ -9704,15 +9703,15 @@ property_value: DiffMono "42.010565" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:1 -is_a: MOD:02078 +is_a: MOD:02078 ! acetylated residue [Term] id: MOD:00395 name: thioester crosslinked residues def: "A protein modification that crosslinks two residues by formation of a thioester bond between a cysteine thiol and either an alpha-carbonyl, as in S-(L-methionyl-L-cysteine), or a sidechain carbonyl, as in S-(L-isoglutamyl)-L-cysteine." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00033 -is_a: MOD:02044 +is_a: MOD:00033 ! crosslinked residues +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:00396 @@ -9720,7 +9719,7 @@ name: O-glycosylated residue def: "A protein modification that effectively replaces a residue hydrogen atom on an oxygen with a carbohydrate-like group through a glycosidic bond." [PubMed:18688235] subset: PSI-MOD-slim synonym: "OGlycoRes" EXACT PSI-MOD-label [] -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00397 @@ -9735,7 +9734,7 @@ property_value: DiffMono "57.021464" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:4 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00398 @@ -9751,7 +9750,7 @@ property_value: DiffFormula "C 1 H 1 N 1 O 1" xsd:string property_value: DiffMono "43.005814" xsd:float property_value: Origin "X" xsd:string xref: Unimod:5 -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00399 @@ -9768,7 +9767,7 @@ property_value: DiffMono "58.005479" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:6 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00400 @@ -9786,7 +9785,7 @@ property_value: DiffFormula "H -1 N -1 O 1" xsd:string property_value: DiffMono "0.984016" xsd:float property_value: Origin "X" xsd:string xref: Unimod:7 -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00401 @@ -9803,8 +9802,8 @@ property_value: MassMono "589.260391" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:8 -is_a: MOD:01426 -is_a: MOD:01820 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:01820 ! isotope tagged sufhydryl reagent modified cysteine [Term] id: MOD:00402 @@ -9821,8 +9820,8 @@ property_value: MassMono "597.310605" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:9 -is_a: MOD:01431 -is_a: MOD:01820 +is_a: MOD:01431 ! (2)H deuterium tagged reagent +is_a: MOD:01820 ! isotope tagged sufhydryl reagent modified cysteine [Term] id: MOD:00403 @@ -9844,7 +9843,7 @@ property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:10 -is_a: MOD:00913 +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00404 @@ -9865,8 +9864,8 @@ property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:11 -is_a: MOD:00601 -is_a: MOD:00913 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00405 @@ -9884,8 +9883,8 @@ property_value: MassMono "553.284390" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:12 -is_a: MOD:01431 -is_a: MOD:01820 +is_a: MOD:01431 ! (2)H deuterium tagged reagent +is_a: MOD:01820 ! isotope tagged sufhydryl reagent modified cysteine [Term] id: MOD:00406 @@ -9903,8 +9902,8 @@ property_value: MassMono "545.234176" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:13 -is_a: MOD:01426 -is_a: MOD:01820 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:01820 ! isotope tagged sufhydryl reagent modified cysteine [Term] id: MOD:00407 @@ -9930,8 +9929,8 @@ property_value: DiffAvg "42.04" xsd:float property_value: DiffFormula "C 2 H 2 O 1" xsd:string property_value: DiffMono "42.010565" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00394 -is_a: MOD:00670 +is_a: MOD:00394 ! monoacetylated residue +is_a: MOD:00670 ! N-acylated residue [Term] id: MOD:00409 @@ -9946,8 +9945,8 @@ property_value: DiffAvg "28.01" xsd:float property_value: DiffFormula "C 1 O 1" xsd:string property_value: DiffMono "27.994915" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00493 -is_a: MOD:00670 +is_a: MOD:00493 ! formylated residue +is_a: MOD:00670 ! N-acylated residue [Term] id: MOD:00410 @@ -9965,8 +9964,8 @@ property_value: MassMono "202.077599" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:17 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00411 @@ -10007,8 +10006,8 @@ property_value: MassMono "517.202876" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:20 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00414 @@ -10028,8 +10027,8 @@ property_value: MassAvg "170.22" xsd:float property_value: MassMono "170.116761" xsd:float property_value: Origin "R" xsd:string xref: Unimod:34 -is_a: MOD:00599 -is_a: MOD:00658 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00658 ! methylated arginine [Term] id: MOD:00415 @@ -10057,8 +10056,8 @@ property_value: DiffMono "-18.010565" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:23 -is_a: MOD:00432 -is_a: MOD:00704 +is_a: MOD:00432 ! modified residue with neutral loss of phosphate +is_a: MOD:00704 ! dehydrated residue [Term] id: MOD:00417 @@ -10082,7 +10081,7 @@ property_value: MassMono "174.046299" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:24 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00418 @@ -10097,8 +10096,8 @@ property_value: DiffMono "119.037114" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:25 -is_a: MOD:00649 -is_a: MOD:00848 +is_a: MOD:00649 ! acylated residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00419 @@ -10121,8 +10120,8 @@ property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:26 -is_a: MOD:00601 -is_a: MOD:00905 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00420 @@ -10154,8 +10153,8 @@ property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:27 xref: uniprot.ptm:PTM-0262 -is_a: MOD:00906 -is_a: MOD:01048 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01048 ! 2-pyrrolidone-5-carboxylic acid [Term] id: MOD:00421 @@ -10163,7 +10162,7 @@ name: C-glycosylated residue def: "A protein modification that effectively replaces a residue hydrogen atom on a carbon with a carbohydrate-like group through a glycosidic bond." [PubMed:18688235] subset: PSI-MOD-slim synonym: "CGlycoRes" EXACT PSI-MOD-label [] -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00422 @@ -10180,8 +10179,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:29 -is_a: MOD:01696 -is_a: MOD:01813 +is_a: MOD:01696 ! alpha-amino acylated residue +is_a: MOD:01813 ! morpholine-2-acetylated residue [Term] id: MOD:00423 @@ -10197,7 +10196,7 @@ property_value: DiffFormula "H -1 Na 1" xsd:string property_value: DiffMono "21.981944" xsd:float property_value: Origin "X" xsd:string xref: Unimod:30 -is_a: MOD:00747 +is_a: MOD:00747 ! sodium containing modified residue [Term] id: MOD:00424 @@ -10220,8 +10219,8 @@ property_value: MassMono "208.067034" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:31 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00425 @@ -10236,14 +10235,14 @@ property_value: DiffFormula "O 1" xsd:string property_value: DiffMono "15.994915" xsd:float property_value: Origin "X" xsd:string xref: Unimod:35 -is_a: MOD:00677 +is_a: MOD:00677 ! hydroxylated residue [Term] id: MOD:00426 name: S-glycosylated residue def: "A protein modification that effectively replaces a residue hydrogen atom on a sulfur with a carbohydrate-like group through a glycosidic bond." [PubMed:18688235] synonym: "SGlycoRes" EXACT PSI-MOD-label [] -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00427 @@ -10253,7 +10252,7 @@ comment: From DeltaMass: Average Mass: 14 Average Mass Change:14 References:Meth subset: PSI-MOD-slim synonym: "MeRes" EXACT PSI-MOD-label [] synonym: "Methylation (N terminus, N epsilon of Lysine, O of Serine, Threonine or C terminus, N of Asparagine)" EXACT DeltaMass-label [] -is_a: MOD:00001 +is_a: MOD:00001 ! alkylated residue [Term] id: MOD:00428 @@ -10268,7 +10267,7 @@ property_value: DiffFormula "C 0 H 0 N 0 O 2" xsd:string property_value: DiffMono "31.989829" xsd:float property_value: Origin "X" xsd:string xref: Unimod:425 -is_a: MOD:00677 +is_a: MOD:00677 ! hydroxylated residue [Term] id: MOD:00429 @@ -10285,7 +10284,7 @@ property_value: DiffFormula "C 2 H 4" xsd:string property_value: DiffMono "28.031300" xsd:float property_value: Origin "X" xsd:string xref: Unimod:36 -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00430 @@ -10301,7 +10300,7 @@ property_value: DiffFormula "C 3 H 6" xsd:string property_value: DiffMono "42.046950" xsd:float property_value: Origin "X" xsd:string xref: Unimod:37 -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00431 @@ -10309,7 +10308,7 @@ name: modified residue with a secondary neutral loss def: "Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral molecular fragment." [PubMed:18688235] subset: PSI-MOD-slim synonym: "NLModRes" EXACT PSI-MOD-label [] -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00432 @@ -10317,7 +10316,7 @@ name: modified residue with neutral loss of phosphate def: "Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral trihydrogen phosphate molecular fragment." [PubMed:18688235] subset: PSI-MOD-slim synonym: "dPhosModRes" EXACT PSI-MOD-label [] -is_a: MOD:00431 +is_a: MOD:00431 ! modified residue with a secondary neutral loss [Term] id: MOD:00433 @@ -10329,8 +10328,8 @@ property_value: DiffAvg "162.14" xsd:float property_value: DiffFormula "C 6 H 10 N 0 O 5" xsd:string property_value: DiffMono "162.052823" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00761 -is_a: MOD:00726 +is_a: MOD:00761 ! monohexosylated residue +is_a: MOD:00726 ! glucosylated residue [Term] id: MOD:00434 @@ -10346,7 +10345,7 @@ synonym: "O-Glycosyl-" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00435 @@ -10362,8 +10361,8 @@ property_value: MassAvg "69.06" xsd:float property_value: MassMono "69.021464" xsd:float property_value: Origin "MOD:00046" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01151 -relationship: derives_from MOD:00046 +is_a: MOD:01151 ! phosphorylated residue with neutral loss of phosphate +relationship: derives_from MOD:00046 ! O-phospho-L-serine [Term] id: MOD:00436 @@ -10378,7 +10377,7 @@ property_value: DiffFormula "C 8 H 13 N 1 O 5" xsd:string property_value: DiffMono "203.079373" xsd:float property_value: Origin "X" xsd:string xref: GNO:G29068FM -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00437 @@ -10396,7 +10395,7 @@ property_value: DiffMono "204.187801" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:44 -is_a: MOD:00703 +is_a: MOD:00703 ! isoprenylated residue [Term] id: MOD:00438 @@ -10415,8 +10414,8 @@ property_value: DiffMono "210.198365" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:45 -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00439 @@ -10432,9 +10431,9 @@ property_value: MassAvg "83.09" xsd:float property_value: MassMono "83.037114" xsd:float property_value: Origin "MOD:00047" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00917 -is_a: MOD:01151 -relationship: derives_from MOD:00047 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01151 ! phosphorylated residue with neutral loss of phosphate +relationship: derives_from MOD:00047 ! O-phospho-L-threonine [Term] id: MOD:00440 @@ -10452,8 +10451,8 @@ property_value: DiffFormula "C 16 H 30 O 1" xsd:string property_value: DiffMono "238.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00441 @@ -10471,7 +10470,7 @@ property_value: DiffMono "272.250401" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:48 -is_a: MOD:00703 +is_a: MOD:00703 ! isoprenylated residue [Term] id: MOD:00442 @@ -10486,8 +10485,8 @@ property_value: MassAvg "142.20" xsd:float property_value: MassMono "142.110613" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00431 -is_a: MOD:00902 +is_a: MOD:00431 ! modified residue with a secondary neutral loss +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00443 @@ -10502,8 +10501,8 @@ property_value: MassAvg "140.17" xsd:float property_value: MassMono "140.082387" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00431 -is_a: MOD:00902 +is_a: MOD:00431 ! modified residue with a secondary neutral loss +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00444 @@ -10522,8 +10521,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:51 -is_a: MOD:00899 -relationship: has_functional_parent MOD:01144 +is_a: MOD:00899 ! N-palmitoyl-S-diacylglycerol-L-cysteine +relationship: has_functional_parent MOD:01144 ! S-(sn-1-2,3-dipalmitoylglycerol)-L-cysteine [Term] id: MOD:00445 @@ -10542,8 +10541,8 @@ property_value: MassMono "170.116761" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:52 -is_a: MOD:00848 -is_a: MOD:00912 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00446 @@ -10558,7 +10557,7 @@ property_value: DiffMono "156.115030" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:53 -is_a: MOD:01155 +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00447 @@ -10573,7 +10572,7 @@ property_value: DiffFormula "C 6 H 8 O 6" xsd:string property_value: DiffMono "176.032088" xsd:float property_value: Origin "X" xsd:string xref: Unimod:54 -is_a: MOD:00764 +is_a: MOD:00764 ! glycoconjugated residue [Term] id: MOD:00448 @@ -10586,8 +10585,8 @@ property_value: DiffAvg "203.19" xsd:float property_value: DiffFormula "C 8 H 13 N 1 O 5" xsd:string property_value: DiffMono "203.079373" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00733 -is_a: MOD:01673 +is_a: MOD:00733 ! N-acetylaminoglucosylated +is_a: MOD:01673 ! N-acetylaminohexosylated residue [Term] id: MOD:00449 @@ -10602,7 +10601,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:56 -is_a: MOD:01431 +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:00450 @@ -10628,7 +10627,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:58 -is_a: MOD:01894 +is_a: MOD:01894 ! propanoylated residue [Term] id: MOD:00452 @@ -10646,9 +10645,9 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:59 -relationship: derives_from MOD:00451 -is_a: MOD:01428 -is_a: MOD:01426 +relationship: derives_from MOD:00451 ! alpha-amino propanoylated residue +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00453 @@ -10662,7 +10661,7 @@ property_value: DiffMono "127.099714" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:60 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00454 @@ -10679,7 +10678,7 @@ property_value: MassMono "258.213507" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:61 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00455 @@ -10693,7 +10692,7 @@ property_value: DiffMono "133.137375" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:62 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00456 @@ -10710,7 +10709,7 @@ property_value: MassMono "264.251168" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:63 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00457 @@ -10725,9 +10724,9 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:64 -relationship: derives_from MOD:01029 -is_a: MOD:01696 -is_a: MOD:01426 +relationship: derives_from MOD:01029 ! succinylated residue +is_a: MOD:01696 ! alpha-amino acylated residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00458 @@ -10742,9 +10741,9 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:65 -relationship: derives_from MOD:01029 -is_a: MOD:01696 -is_a: MOD:01426 +relationship: derives_from MOD:01029 ! succinylated residue +is_a: MOD:01696 ! alpha-amino acylated residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00459 @@ -10757,10 +10756,10 @@ property_value: DiffFormula "(13)C 4 H 4 O 3" xsd:string property_value: DiffMono "104.029463" xsd:float property_value: Origin "X" xsd:string xref: Unimod:66 -relationship: derives_from MOD:01029 -is_a: MOD:01696 -is_a: MOD:01428 -is_a: MOD:01426 +relationship: derives_from MOD:01029 ! succinylated residue +is_a: MOD:01696 ! alpha-amino acylated residue +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00460 @@ -10792,7 +10791,7 @@ property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:345 xref: uniprot.ptm:PTM-0634 -is_a: MOD:00708 +is_a: MOD:00708 ! sulfur oxygenated L-cysteine [Term] id: MOD:00461 @@ -10808,7 +10807,7 @@ property_value: DiffFormula "H -1 N 1 O 2" xsd:string property_value: DiffMono "44.985078" xsd:float property_value: Origin "X" xsd:string xref: Unimod:354 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00462 @@ -10828,7 +10827,7 @@ property_value: MassMono "190.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:351 -is_a: MOD:00918 +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00463 @@ -10847,8 +10846,8 @@ property_value: MassMono "206.069142" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:350 -is_a: MOD:00679 -is_a: MOD:00918 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00464 @@ -10870,8 +10869,8 @@ property_value: MassMono "218.069142" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:425 -is_a: MOD:00679 -is_a: MOD:00918 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00465 @@ -10891,16 +10890,16 @@ property_value: MassMono "179.058243" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:425 -is_a: MOD:00428 -is_a: MOD:00914 +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:00466 name: glycosylsphingolipidinositolated residue def: "A protein modification that effectively converts a residue to a glycosylsphingolipidinositolethanolamidated." [PubMed:12626404, PubMed:18688235, PubMed:8404891] synonym: "GSIRes" EXACT PSI-MOD-label [] -is_a: MOD:00764 -is_a: MOD:01155 +is_a: MOD:00764 ! glycoconjugated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00467 @@ -10914,7 +10913,7 @@ property_value: DiffMono "225.093583" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:89 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00468 @@ -10928,7 +10927,7 @@ property_value: DiffMono "338.177647" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:90 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00469 @@ -10942,7 +10941,7 @@ property_value: DiffMono "348.240415" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:91 -is_a: MOD:01431 +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:00470 @@ -10956,7 +10955,7 @@ property_value: DiffMono "339.161663" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:92 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00471 @@ -10970,7 +10969,7 @@ property_value: DiffMono "601.206247" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:93 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00472 @@ -10987,7 +10986,7 @@ property_value: MassMono "196.132411" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:94 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00473 @@ -11004,7 +11003,7 @@ property_value: MassMono "200.157518" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:95 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00474 @@ -11024,8 +11023,8 @@ property_value: MassMono "177.065129" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:97 -relationship: derives_from MOD:00417 -is_a: MOD:01426 +relationship: derives_from MOD:00417 ! S-carboxamidoethyl-L-cysteine +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00475 @@ -11042,8 +11041,8 @@ property_value: MassMono "178.074228" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:342 -is_a: MOD:00919 -is_a: MOD:02039 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:02039 ! aminated residue [Term] id: MOD:00476 @@ -11056,8 +11055,8 @@ property_value: DiffFormula "C 6 H 10 O 5" xsd:string property_value: DiffMono "162.052823" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00761 -is_a: MOD:00728 +is_a: MOD:00761 ! monohexosylated residue +is_a: MOD:00728 ! galactosylated residue [Term] id: MOD:00477 @@ -11075,8 +11074,8 @@ property_value: MassMono "84.044939" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:360 -is_a: MOD:00683 -is_a: MOD:00915 +is_a: MOD:00683 ! dehydrogenated residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00478 @@ -11097,9 +11096,9 @@ property_value: MassMono "113.047678" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:35 -is_a: MOD:00679 -is_a: MOD:00915 -is_a: MOD:01440 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01440 ! glutamyl semialdehyde [Term] id: MOD:00479 @@ -11118,8 +11117,8 @@ property_value: MassMono "113.047678" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:344 -is_a: MOD:00902 -is_a: MOD:01440 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:01440 ! glutamyl semialdehyde [Term] id: MOD:00480 @@ -11138,7 +11137,7 @@ property_value: MassMono "330.136176" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:105 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00481 @@ -11157,7 +11156,7 @@ property_value: MassMono "339.166370" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:106 -is_a: MOD:01428 +is_a: MOD:01428 ! (13)C isotope tagged reagent [Term] id: MOD:00482 @@ -11183,7 +11182,7 @@ property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:122 xref: uniprot.ptm:PTM-0212 -is_a: MOD:00913 +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00483 @@ -11201,8 +11200,8 @@ property_value: MassMono "228.056863" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:108 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00484 @@ -11219,8 +11218,8 @@ property_value: MassMono "482.267525" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:112 -is_a: MOD:00848 -is_a: MOD:00912 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00485 @@ -11237,8 +11236,8 @@ property_value: MassMono "480.251875" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:113 -is_a: MOD:00848 -is_a: MOD:00912 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00486 @@ -11255,8 +11254,8 @@ property_value: MassMono "468.251875" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:114 -is_a: MOD:00848 -is_a: MOD:00915 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00487 @@ -11273,8 +11272,8 @@ property_value: MassMono "466.236225" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:115 -is_a: MOD:00848 -is_a: MOD:00915 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00488 @@ -11290,8 +11289,8 @@ property_value: MassAvg "466.60" xsd:float property_value: MassMono "466.236225" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 -is_a: MOD:00902 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00489 @@ -11308,8 +11307,8 @@ property_value: MassMono "468.251875" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:117 -is_a: MOD:00848 -is_a: MOD:00902 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00490 @@ -11322,7 +11321,7 @@ property_value: DiffFormula "C 20 H 34 N 4 O 4 S 3" xsd:string property_value: DiffMono "490.174219" xsd:float property_value: Origin "X" xsd:string xref: Unimod:118 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00491 @@ -11339,9 +11338,9 @@ property_value: MassMono "419.147272" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:119 -is_a: MOD:00848 -is_a: MOD:00861 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00492 @@ -11361,10 +11360,10 @@ property_value: MassMono "242.137890" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:121 -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:01875 -relationship: derives_from MOD:01148 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01875 ! N6-acylated L-lysine +relationship: derives_from MOD:01148 ! ubiquitinylated lysine [Term] id: MOD:00493 @@ -11381,7 +11380,7 @@ property_value: DiffFormula "C 1 O 1" xsd:string property_value: DiffMono "27.994915" xsd:float property_value: Origin "X" xsd:string xref: Unimod:122 -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:00494 @@ -11398,8 +11397,8 @@ property_value: MassMono "448.107100" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:123 -is_a: MOD:00905 -is_a: MOD:01426 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00495 @@ -11416,8 +11415,8 @@ property_value: MassMono "454.127229" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:124 -is_a: MOD:00905 -is_a: MOD:01426 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00496 @@ -11449,8 +11448,8 @@ property_value: MassMono "216.093249" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:126 -is_a: MOD:00848 -is_a: MOD:00912 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00498 @@ -11462,7 +11461,7 @@ synonym: "Fluorophenylalanyl" EXACT DeltaMass-label [] synonym: "FRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00694 +is_a: MOD:00694 ! halogen containing residue [Term] id: MOD:00499 @@ -11479,8 +11478,8 @@ property_value: MassMono "491.091297" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:128 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00500 @@ -11497,7 +11496,7 @@ property_value: DiffFormula "H -1 I 1" xsd:string property_value: DiffMono "125.896648" xsd:float property_value: Origin "X" xsd:string xref: Unimod:129 -is_a: MOD:00755 +is_a: MOD:00755 ! iodinated residue [Term] id: MOD:00501 @@ -11513,7 +11512,7 @@ property_value: DiffFormula "H -2 I 2" xsd:string property_value: DiffMono "251.793295" xsd:float property_value: Origin "X" xsd:string xref: Unimod:130 -is_a: MOD:00755 +is_a: MOD:00755 ! iodinated residue [Term] id: MOD:00502 @@ -11531,7 +11530,7 @@ property_value: DiffMono "377.689943" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:131 -is_a: MOD:00755 +is_a: MOD:00755 ! iodinated residue [Term] id: MOD:00503 @@ -11552,8 +11551,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:134 -is_a: MOD:00908 -is_a: MOD:01696 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:00504 @@ -11574,8 +11573,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:135 -is_a: MOD:00908 -is_a: MOD:01696 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:00505 @@ -11591,7 +11590,7 @@ property_value: DiffMono "104.026215" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:136 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00506 @@ -11609,8 +11608,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:137 xref: GNO:G02815KT -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00507 @@ -11654,7 +11653,7 @@ property_value: DiffMono "41.026549" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:141 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00510 @@ -11673,8 +11672,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:142 xref: GNO:G00194GV -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00511 @@ -11692,8 +11691,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:143 xref: GNO:G27391WQ -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00512 @@ -11711,8 +11710,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:144 xref: GNO:G39365VM -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00513 @@ -11730,8 +11729,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:145 xref: GNO:G74392IM -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00514 @@ -11749,8 +11748,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:146 xref: GNO:G54129SE -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00515 @@ -11768,8 +11767,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:147 xref: GNO:G06042JP -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00516 @@ -11787,8 +11786,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:148 xref: GNO:G58001LT -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00517 @@ -11804,7 +11803,7 @@ property_value: DiffMono "657.235437" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: GNO:G17015OC -is_a: MOD:00725 +is_a: MOD:00725 ! complex glycosylation [Term] id: MOD:00518 @@ -11822,8 +11821,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:150 xref: GNO:G90423UY -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00519 @@ -11841,8 +11840,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:151 xref: GNO:G54968WM -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00520 @@ -11860,8 +11859,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:152 xref: GNO:G94583DZ -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00521 @@ -11879,8 +11878,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:153 xref: GNO:G53434XO -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00522 @@ -11898,8 +11897,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:154 xref: GNO:G64686LL -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00523 @@ -11917,8 +11916,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:155 xref: GNO:G84825UQ -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00524 @@ -11936,8 +11935,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:156 xref: GNO:G05460KC -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00525 @@ -11955,8 +11954,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:157 xref: GNO:G18999EB -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00526 @@ -11974,8 +11973,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:158 xref: GNO:G93579XB -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00527 @@ -11995,8 +11994,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:159 xref: GNO:G28681TP -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00528 @@ -12011,7 +12010,7 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:160 xref: GNO:G23729WG -is_a: MOD:00725 +is_a: MOD:00725 ! complex glycosylation [Term] id: MOD:00529 @@ -12029,8 +12028,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:161 xref: GNO:G88520YF -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00530 @@ -12049,8 +12048,8 @@ property_value: MassMono "178.984935" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:162 -is_a: MOD:00007 -is_a: MOD:00913 +is_a: MOD:00007 ! selenium substitution for sulfur +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00531 @@ -12068,7 +12067,7 @@ property_value: MassMono "117.031189" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:170 -is_a: MOD:01293 +is_a: MOD:01293 ! 1x(18)O labeled deamidated L-asparagine [Term] id: MOD:00532 @@ -12085,7 +12084,7 @@ property_value: MassMono "345.087891" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:171 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00533 @@ -12102,7 +12101,7 @@ property_value: MassMono "339.067762" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:172 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00534 @@ -12117,7 +12116,7 @@ property_value: DiffMono "218.167065" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:176 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00535 @@ -12132,7 +12131,7 @@ property_value: DiffMono "87.050656" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:178 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00536 @@ -12163,14 +12162,14 @@ property_value: MassAvg "71.08" xsd:float property_value: MassMono "71.037114" xsd:float property_value: Origin "T" xsd:string xref: Unimod:659 -is_a: MOD:00917 +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00538 name: protein modification categorized by isobaric sets def: "Modified amino acid residues groups into isobaric sets at particular mass resolution cut-offs." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00000 +is_a: MOD:00000 ! protein modification [Term] id: MOD:00539 @@ -12196,7 +12195,7 @@ property_value: DiffMono "9.030194" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:184 -is_a: MOD:00842 +is_a: MOD:00842 ! (13)C labeled residue [Term] id: MOD:00541 @@ -12213,10 +12212,10 @@ property_value: MassMono "252.059853" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:185 -is_a: MOD:00919 -is_a: MOD:00842 -relationship: derives_from MOD:00540 -relationship: derives_from MOD:00048 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:00842 ! (13)C labeled residue +relationship: derives_from MOD:00540 ! 9x(13)C labeled residue +relationship: derives_from MOD:00048 ! O4'-phospho-L-tyrosine [Term] id: MOD:00542 @@ -12233,8 +12232,8 @@ property_value: MassMono "288.122240" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:186 -is_a: MOD:00902 -is_a: MOD:00848 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00543 @@ -12252,8 +12251,8 @@ property_value: MassMono "438.153934" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:187 -is_a: MOD:00902 -is_a: MOD:00848 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00544 @@ -12268,7 +12267,7 @@ property_value: DiffMono "6.020129" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:188 -is_a: MOD:00842 +is_a: MOD:00842 ! (13)C labeled residue [Term] id: MOD:00545 @@ -12295,7 +12294,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:193 -is_a: MOD:00847 +is_a: MOD:00847 ! (18)O disubstituted residue [Term] id: MOD:00547 @@ -12309,7 +12308,7 @@ property_value: DiffMono "170.048013" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:194 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00548 @@ -12327,7 +12326,7 @@ property_value: MassMono "274.158923" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:195 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00549 @@ -12346,7 +12345,7 @@ property_value: MassMono "277.177753" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:196 -is_a: MOD:01431 +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:00550 @@ -12363,7 +12362,7 @@ property_value: MassMono "287.166748" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:197 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00551 @@ -12380,7 +12379,7 @@ property_value: MassMono "292.198132" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:198 -is_a: MOD:01431 +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:00552 @@ -12396,7 +12395,7 @@ property_value: DiffMono "32.056407" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:199 -is_a: MOD:00839 +is_a: MOD:00839 ! (2)H deuterium labeled residue [Term] id: MOD:00553 @@ -12412,7 +12411,7 @@ property_value: DiffMono "75.980528" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:200 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00554 @@ -12534,7 +12533,7 @@ property_value: DiffMono "85.052764" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:211 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00562 @@ -12548,7 +12547,7 @@ property_value: DiffMono "90.084148" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:212 -is_a: MOD:01431 +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:00563 @@ -12561,8 +12560,8 @@ property_value: DiffAvg "203.19" xsd:float property_value: DiffFormula "C 8 H 13 N 1 O 5" xsd:string property_value: DiffMono "203.079373" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00734 -is_a: MOD:01673 +is_a: MOD:00734 ! N-acetylaminogalactosylated +is_a: MOD:01673 ! N-acetylaminohexosylated residue [Term] id: MOD:00564 @@ -12592,7 +12591,7 @@ property_value: MassMono "115.026943" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:7 -is_a: MOD:00903 +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00566 @@ -12610,8 +12609,8 @@ property_value: MassMono "399.025225" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:243 -is_a: MOD:00905 -is_a: MOD:00848 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00567 @@ -12643,14 +12642,14 @@ id: MOD:00569 name: residues isobaric at a resolution below 0.000001 Da def: "Natural or modified residues that are isobaric at a resolution below 0.000001 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00770 +is_a: MOD:00770 ! residues isobaric at a resolution below 0.01 Da [Term] id: MOD:00570 name: residues isobaric at 71.037114 Da def: "Natural or modified residues with a mass of 71.037114 Da." [PubMed:18688235] -is_a: MOD:00569 -is_a: MOD:00769 +is_a: MOD:00569 ! residues isobaric at a resolution below 0.000001 Da +is_a: MOD:00769 ! residues isobaric at 71.0-71.1 Da [Term] id: MOD:00571 @@ -12670,9 +12669,9 @@ property_value: MassMono "112.039853" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:359 -is_a: MOD:00679 -is_a: MOD:00915 -is_a: MOD:01048 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01048 ! 2-pyrrolidone-5-carboxylic acid [Term] id: MOD:00572 @@ -12689,8 +12688,8 @@ property_value: MassMono "355.167811" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:343 -is_a: MOD:00848 -is_a: MOD:00902 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00573 @@ -12708,8 +12707,8 @@ property_value: MassMono "369.183461" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:353 -is_a: MOD:00848 -is_a: MOD:00912 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00574 @@ -12727,8 +12726,8 @@ property_value: MassMono "355.167811" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:357 -is_a: MOD:00848 -is_a: MOD:00915 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00575 @@ -12746,8 +12745,8 @@ property_value: MassMono "341.152161" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:361 -is_a: MOD:00848 -is_a: MOD:00917 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00576 @@ -12761,7 +12760,7 @@ property_value: DiffMono "70.041865" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:253 -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:00577 @@ -12778,8 +12777,8 @@ property_value: MassMono "666.490465" xsd:float property_value: Origin "K, K, K, K, K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:254 -is_a: MOD:02051 -is_a: MOD:00692 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:00692 ! uncategorized crosslinked residues [Term] id: MOD:00578 @@ -12838,7 +12837,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:258 -is_a: MOD:00845 +is_a: MOD:00845 ! (18)O substituted residue [Term] id: MOD:00582 @@ -12856,9 +12855,9 @@ property_value: MassMono "136.109162" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:259 -is_a: MOD:00842 -is_a: MOD:00843 -is_a: MOD:00912 +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00843 ! (15)N labeled residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00583 @@ -12872,8 +12871,8 @@ property_value: DiffMono "95.943487" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:260 -is_a: MOD:00860 -is_a: MOD:00861 +is_a: MOD:00860 ! sulfur containing modified residue +is_a: MOD:00861 ! phosphorus containing modified residue [Term] id: MOD:00584 @@ -12888,7 +12887,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:261 -is_a: MOD:00841 +is_a: MOD:00841 ! isothiocyanate reagent derivatized residue [Term] id: MOD:00585 @@ -12903,7 +12902,7 @@ property_value: DiffMono "3.018830" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:262 -is_a: MOD:00786 +is_a: MOD:00786 ! deuterium substituted residue [Term] id: MOD:00586 @@ -12917,7 +12916,7 @@ property_value: DiffMono "121.035006" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:264 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00587 @@ -12936,9 +12935,9 @@ property_value: MassMono "166.109380" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:267 -is_a: MOD:00842 -is_a: MOD:00843 -is_a: MOD:00902 +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00843 ! (15)N labeled residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00588 @@ -12955,8 +12954,8 @@ property_value: MassMono "105.082223" xsd:float property_value: Origin "V" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:268 -is_a: MOD:00920 -is_a: MOD:01809 +is_a: MOD:00920 ! modified L-valine residue +is_a: MOD:01809 ! 5x(13)C,1x(15)N labeled residue [Term] id: MOD:00589 @@ -12973,9 +12972,9 @@ property_value: MassMono "157.095642" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:269 -is_a: MOD:00842 -is_a: MOD:00843 -is_a: MOD:00914 +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00843 ! (15)N labeled residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:00590 @@ -13018,7 +13017,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:272 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00593 @@ -13043,8 +13042,8 @@ id: MOD:00594 name: residues isobaric at 113.047678 Da def: "Natural or modified resiues with a mass of 113.047678 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00569 -is_a: MOD:00624 +is_a: MOD:00569 ! residues isobaric at a resolution below 0.000001 Da +is_a: MOD:00624 ! residues isobaric at 113.0-113.1 Da [Term] id: MOD:00595 @@ -13057,8 +13056,8 @@ property_value: DiffFormula "C 6 H 10 O 5" xsd:string property_value: DiffMono "162.052823" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00727 -is_a: MOD:00761 +is_a: MOD:00727 ! mannosylated residue +is_a: MOD:00761 ! monohexosylated residue [Term] id: MOD:00596 @@ -13074,7 +13073,7 @@ property_value: DiffMono "183.035400" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:276 -is_a: MOD:01652 +is_a: MOD:01652 ! sulfonyl halide reagent derivatized residue [Term] id: MOD:00597 @@ -13106,7 +13105,7 @@ property_value: MassMono "147.035400" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:278 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00599 @@ -13121,7 +13120,7 @@ property_value: DiffFormula "C 1 H 2" xsd:string property_value: DiffMono "14.015650" xsd:float property_value: Origin "X" xsd:string xref: Unimod:34 -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00600 @@ -13140,8 +13139,8 @@ property_value: MassMono "157.073893" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:280 -is_a: MOD:00906 -is_a: MOD:01339 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01339 ! ethylated residue [Term] id: MOD:00601 @@ -13149,7 +13148,7 @@ name: cyclized residue def: "A protein modification that effectively produces an heterocyclic amino acid with a covalent bond between the side chain and either its alpha amino or 1-carboxyl group, possibly breaking the peptide chain." [PubMed:18688235] subset: PSI-MOD-slim synonym: "CycRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00602 @@ -13157,7 +13156,7 @@ name: N-methylated residue def: "A protein modification that effectively replaces a hydrogen atom of a residue amino or imino group with an methyl group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "NMeRes" EXACT PSI-MOD-label [] -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00603 @@ -13188,9 +13187,9 @@ property_value: MassMono "144.123167" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:284 -is_a: MOD:00839 -is_a: MOD:00912 -relationship: derives_from MOD:00085 +is_a: MOD:00839 ! (2)H deuterium labeled residue +is_a: MOD:00912 ! modified L-lysine residue +relationship: derives_from MOD:00085 ! N6-methyl-L-lysine [Term] id: MOD:00605 @@ -13205,7 +13204,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:285 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00606 @@ -13220,7 +13219,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:286 -is_a: MOD:01428 +is_a: MOD:01428 ! (13)C isotope tagged reagent [Term] id: MOD:00607 @@ -13239,7 +13238,7 @@ property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:288 -is_a: MOD:00918 +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00608 @@ -13250,7 +13249,7 @@ synonym: "Biotin-PEO-Amine" RELATED Unimod-interim [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:289 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00609 @@ -13267,8 +13266,8 @@ property_value: MassMono "531.200768" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:290 -is_a: MOD:00905 -is_a: MOD:00848 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00610 @@ -13285,9 +13284,9 @@ property_value: MassMono "304.979828" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:291 -is_a: MOD:00848 -is_a: MOD:02067 -is_a: MOD:01075 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:01075 ! mercury containing modified residue [Term] id: MOD:00611 @@ -13301,7 +13300,7 @@ property_value: DiffMono "322.020217" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:292 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00612 @@ -13315,8 +13314,8 @@ property_value: DiffMono "145.019749" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:293 -is_a: MOD:00649 -is_a: MOD:00848 +is_a: MOD:00649 ! acylated residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00613 @@ -13333,8 +13332,8 @@ property_value: MassMono "429.150446" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:294 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00614 @@ -13351,7 +13350,7 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:295 xref: GNO:G49112ZN -is_a: MOD:00736 +is_a: MOD:00736 ! deoxyhexosylated residue [Term] id: MOD:00615 @@ -13372,7 +13371,7 @@ id: MOD:00616 name: residues isobaric at a resolution below 0.1 Da def: "Natural or modified residues that are isobaric at a resolution below 0.1 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00538 +is_a: MOD:00538 ! protein modification categorized by isobaric sets [Term] id: MOD:00617 @@ -13388,7 +13387,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:298 -is_a: MOD:00839 +is_a: MOD:00839 ! (2)H deuterium labeled residue [Term] id: MOD:00618 @@ -13406,8 +13405,8 @@ property_value: MassMono "230.069142" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:299 -is_a: MOD:00918 -is_a: MOD:01152 +is_a: MOD:00918 ! modified L-tryptophan residue +is_a: MOD:01152 ! carboxylated residue [Term] id: MOD:00619 @@ -13438,8 +13437,8 @@ property_value: MassMono "293.083412" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:301 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00621 @@ -13453,7 +13452,7 @@ property_value: DiffMono "170.036779" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:302 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00622 @@ -13472,8 +13471,8 @@ property_value: MassMono "179.007471" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:303 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00623 @@ -13491,15 +13490,15 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:305 xref: GNO:G25987BV -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00624 name: residues isobaric at 113.0-113.1 Da def: "Natural or modified residues with a mass of 113.0-113.1 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00616 +is_a: MOD:00616 ! residues isobaric at a resolution below 0.1 Da [Term] id: MOD:00625 @@ -13513,7 +13512,7 @@ property_value: DiffMono "111.032028" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:314 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00626 @@ -13527,7 +13526,7 @@ property_value: DiffMono "421.073242" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:478 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00627 @@ -13547,8 +13546,8 @@ property_value: MassMono "206.141913" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:316 -is_a: MOD:00848 -is_a: MOD:00912 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00628 @@ -13560,7 +13559,7 @@ property_value: DiffMono "324.105647" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: GNO:G90627TW -is_a: MOD:00725 +is_a: MOD:00725 ! complex glycosylation [Term] id: MOD:00629 @@ -13578,8 +13577,8 @@ property_value: MassMono "190.110613" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:318 -is_a: MOD:00848 -is_a: MOD:00912 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00630 @@ -13594,7 +13593,7 @@ property_value: DiffMono "54.010565" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:319 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00631 @@ -13609,7 +13608,7 @@ property_value: DiffMono "143.058243" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:320 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00632 @@ -13640,8 +13639,8 @@ property_value: MassMono "816.102263" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:323 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00634 @@ -13656,7 +13655,7 @@ property_value: DiffMono "122.990948" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:324 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00635 @@ -13673,9 +13672,9 @@ property_value: MassMono "659.348157" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:325 -is_a: MOD:00848 -is_a: MOD:00861 -is_a: MOD:00916 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00636 @@ -13693,7 +13692,7 @@ property_value: MassMono "131.040485" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:327 -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00637 @@ -13710,10 +13709,10 @@ property_value: MassMono "174.138946" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:329 -is_a: MOD:00839 -is_a: MOD:00842 -is_a: MOD:00902 -relationship: derives_from MOD:00414 +is_a: MOD:00839 ! (2)H deuterium labeled residue +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00902 ! modified L-arginine residue +relationship: derives_from MOD:00414 ! monomethylated L-arginine [Term] id: MOD:00638 @@ -13730,10 +13729,10 @@ property_value: MassMono "192.176781" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:330 -is_a: MOD:00839 -is_a: MOD:00842 -is_a: MOD:00902 -relationship: derives_from MOD:00783 +is_a: MOD:00839 ! (2)H deuterium labeled residue +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00902 ! modified L-arginine residue +relationship: derives_from MOD:00783 ! dimethylated L-arginine [Term] id: MOD:00639 @@ -13747,8 +13746,8 @@ property_value: DiffMono "525.142895" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:332 -is_a: MOD:00848 -is_a: MOD:00861 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue [Term] id: MOD:00640 @@ -13765,9 +13764,9 @@ property_value: MassMono "554.233935" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:333 -is_a: MOD:00848 -is_a: MOD:00861 -is_a: MOD:00916 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00641 @@ -13795,9 +13794,9 @@ property_value: DiffMono "158.130680" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:335 -is_a: MOD:00848 -is_a: MOD:01155 -relationship: derives_from MOD:00446 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:01155 ! lipoconjugated residue +relationship: derives_from MOD:00446 ! 4-hydroxynonenal adduct [Term] id: MOD:00643 @@ -13811,7 +13810,7 @@ property_value: DiffMono "13.031634" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:337 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00644 @@ -13824,8 +13823,8 @@ property_value: DiffFormula "C 2 H 2 O 1" xsd:string property_value: DiffMono "42.010565" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00394 -is_a: MOD:00671 +is_a: MOD:00394 ! monoacetylated residue +is_a: MOD:00671 ! O-acylated residue [Term] id: MOD:00645 @@ -13838,8 +13837,8 @@ property_value: DiffFormula "C 2 H 2 O 1 S 0" xsd:string property_value: DiffMono "42.010565" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00394 -is_a: MOD:00672 +is_a: MOD:00394 ! monoacetylated residue +is_a: MOD:00672 ! S-acylated residue [Term] id: MOD:00646 @@ -13855,8 +13854,8 @@ property_value: MassAvg "145.18" xsd:float property_value: MassMono "145.019749" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00394 -is_a: MOD:00905 +is_a: MOD:00394 ! monoacetylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00647 @@ -13869,8 +13868,8 @@ property_value: DiffFormula "C 2 H 2 N 0 O 1" xsd:string property_value: DiffMono "42.010565" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00394 -is_a: MOD:00916 +is_a: MOD:00394 ! monoacetylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00648 @@ -13890,9 +13889,9 @@ property_value: MassMono "172.060983" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:02080 -relationship: has_functional_parent MOD:00060 -relationship: has_functional_parent MOD:00369 +is_a: MOD:02080 ! diacetylated L-serine +relationship: has_functional_parent MOD:00060 ! N-acetyl-L-serine +relationship: has_functional_parent MOD:00369 ! O-acetyl-L-serine [Term] id: MOD:00649 @@ -13900,7 +13899,7 @@ name: acylated residue def: "A protein modification that effectively replaces a hydrogen atom with an acyl group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "AcylRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00650 @@ -13913,8 +13912,8 @@ property_value: DiffFormula "C 14 H 26 O 1" xsd:string property_value: DiffMono "210.198365" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00438 -is_a: MOD:00670 +is_a: MOD:00438 ! myristoylated residue +is_a: MOD:00670 ! N-acylated residue [Term] id: MOD:00651 @@ -13928,8 +13927,8 @@ property_value: DiffFormula "C 16 H 30 O 1" xsd:string property_value: DiffMono "238.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00440 -is_a: MOD:00670 +is_a: MOD:00440 ! palmitoylated residue +is_a: MOD:00670 ! N-acylated residue [Term] id: MOD:00652 @@ -13943,8 +13942,8 @@ property_value: DiffFormula "C 16 H 30 O 1" xsd:string property_value: DiffMono "238.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00440 -is_a: MOD:00671 +is_a: MOD:00440 ! palmitoylated residue +is_a: MOD:00671 ! O-acylated residue [Term] id: MOD:00653 @@ -13958,8 +13957,8 @@ property_value: DiffFormula "C 16 H 30 O 1 S 0" xsd:string property_value: DiffMono "238.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00440 -is_a: MOD:00672 +is_a: MOD:00440 ! palmitoylated residue +is_a: MOD:00672 ! S-acylated residue [Term] id: MOD:00654 @@ -13967,7 +13966,7 @@ name: S-methylated residue def: "a protein modification that effectively replaces a sulfanyl group with a methylsulfanyl group" [PubMed:18688235] subset: PSI-MOD-slim synonym: "SMeRes" EXACT PSI-MOD-label [] -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00655 @@ -13979,15 +13978,15 @@ property_value: DiffFormula "C 14 H 26 O 1 S 0" xsd:string property_value: DiffMono "210.198365" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00438 -is_a: MOD:00672 +is_a: MOD:00438 ! myristoylated residue +is_a: MOD:00672 ! S-acylated residue [Term] id: MOD:00656 name: C-methylated residue def: "A protein modification that effectively replaces a residue hydrocarbyl hydrogen with an methyl group." [PubMed:18688235] synonym: "CMeRes" EXACT PSI-MOD-label [] -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00657 @@ -14018,9 +14017,9 @@ property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string xref: Unimod:528 xref: uniprot.ptm:PTM-0127 -is_a: MOD:01369 -is_a: MOD:01453 -relationship: has_functional_parent MOD:00659 +is_a: MOD:01369 ! deamidated and methyl esterified residue +is_a: MOD:01453 ! L-glutamic acid 5-methyl ester +relationship: has_functional_parent MOD:00659 ! methylated glutamine [Term] id: MOD:00658 @@ -14030,8 +14029,8 @@ subset: PSI-MOD-slim synonym: "MeArg" EXACT PSI-MOD-label [] property_value: Origin "R" xsd:string xref: uniprot.ptm:PTM-0238 -is_a: MOD:00427 -is_a: MOD:00902 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00659 @@ -14041,8 +14040,8 @@ subset: PSI-MOD-slim synonym: "MeGln" EXACT PSI-MOD-label [] property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00907 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:00660 @@ -14052,8 +14051,8 @@ subset: PSI-MOD-slim synonym: "MeCys" EXACT PSI-MOD-label [] property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00905 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00661 @@ -14063,8 +14062,8 @@ subset: PSI-MOD-slim synonym: "MeHis" EXACT PSI-MOD-label [] property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00909 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:00662 @@ -14074,8 +14073,8 @@ subset: PSI-MOD-slim synonym: "MeLeu" EXACT PSI-MOD-label [] property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00911 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00911 ! modified L-leucine residue [Term] id: MOD:00663 @@ -14086,15 +14085,15 @@ synonym: "MeLys" EXACT PSI-MOD-label [] property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0193 -is_a: MOD:00427 -is_a: MOD:00912 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00664 name: stereoisomerized residue def: "A protein modification that effectively replaces a residue L-enantiomer (stereoisomer) with a D-enantiomer or with a different diastereomeric isomer." [PubMed:18688235] synonym: "D-Res" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00665 @@ -14104,8 +14103,8 @@ subset: PSI-MOD-slim synonym: "MeAla" EXACT PSI-MOD-label [] property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00901 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:00666 @@ -14118,8 +14117,8 @@ property_value: DiffFormula "C 8 H 14 N 0 O 1" xsd:string property_value: DiffMono "126.104465" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00667 @@ -14131,8 +14130,8 @@ property_value: DiffFormula "C 10 H 18 N 0 O 1" xsd:string property_value: DiffMono "154.135765" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00668 @@ -14147,8 +14146,8 @@ property_value: DiffMono "154.135765" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:449 -is_a: MOD:00667 -is_a: MOD:00671 +is_a: MOD:00667 ! decanoylated residue +is_a: MOD:00671 ! O-acylated residue [Term] id: MOD:00669 @@ -14164,8 +14163,8 @@ property_value: DiffMono "126.104465" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:426 -is_a: MOD:00666 -is_a: MOD:00671 +is_a: MOD:00666 ! octanoylated residue +is_a: MOD:00671 ! O-acylated residue [Term] id: MOD:00670 @@ -14173,7 +14172,7 @@ name: N-acylated residue def: "A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an acyl group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "NAcylRes" EXACT PSI-MOD-label [] -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:00671 @@ -14181,7 +14180,7 @@ name: O-acylated residue def: "A protein modification that effectively replaces a residue hydroxyl group with a acyloxy group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "OAcylRes" EXACT PSI-MOD-label [] -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:00672 @@ -14189,7 +14188,7 @@ name: S-acylated residue def: "A protein modification that effectively replaces a residue sulfanyl group with an acylsulfanyl group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "SAcylRes" EXACT PSI-MOD-label [] -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:00673 @@ -14199,8 +14198,8 @@ subset: PSI-MOD-slim synonym: "MeAsn" EXACT PSI-MOD-label [] property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00903 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00674 @@ -14211,7 +14210,7 @@ property_value: DiffAvg "-0.98" xsd:float property_value: DiffFormula "C 0 H 1 N 1 O -1" xsd:string property_value: DiffMono "-0.984016" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00675 @@ -14220,7 +14219,7 @@ def: "A protein modification that effectively either removes neutral hydrogen at subset: PSI-MOD-slim synonym: "OxRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00676 @@ -14229,7 +14228,7 @@ def: "A protein modification that effectively adds oxygen atoms to a residue wit subset: PSI-MOD-slim synonym: "OxyRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:00675 +is_a: MOD:00675 ! oxidized residue [Term] id: MOD:00677 @@ -14240,7 +14239,7 @@ subset: PSI-MOD-slim synonym: "Hydroxylation (of delta C of Lysine, beta C of Tryptophan, C3 or C4 of Proline, beta C of Aspartate)" EXACT DeltaMass-label [] synonym: "HyRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:00679 +is_a: MOD:00679 ! carbon oxygenated residue [Term] id: MOD:00678 @@ -14249,8 +14248,8 @@ def: "A protein modification that effectively converts an L-proline residue to a subset: PSI-MOD-slim synonym: "HyPro" EXACT PSI-MOD-label [] property_value: Origin "P" xsd:string -is_a: MOD:00677 -is_a: MOD:00915 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00679 @@ -14258,7 +14257,7 @@ name: carbon oxygenated residue def: "A protein modification that effectively adds oxygen atoms to a carbon atom of a residue and removes hydrogen atoms." [PubMed:18688235] subset: PSI-MOD-slim synonym: "COxyRes" EXACT PSI-MOD-label [] -is_a: MOD:00676 +is_a: MOD:00676 ! oxygenated residue [Term] id: MOD:00680 @@ -14266,7 +14265,7 @@ name: sulfur oxygenated residue def: "A protein modification that effectively adds oxygen atoms to a sulfur atom of a residue without removing hydrogen atoms." [PubMed:18688235] subset: PSI-MOD-slim synonym: "SOxyRes" EXACT PSI-MOD-label [] -is_a: MOD:00676 +is_a: MOD:00676 ! oxygenated residue [Term] id: MOD:00681 @@ -14275,8 +14274,8 @@ def: "A protein modification that effectively converts an L-lysine residue to a subset: PSI-MOD-slim synonym: "HyLys" EXACT PSI-MOD-label [] property_value: Origin "K" xsd:string -is_a: MOD:00677 -is_a: MOD:00912 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00682 @@ -14285,8 +14284,8 @@ def: "A protein modification that effectively converts an L-arginine residue to synonym: "HyArg" EXACT PSI-MOD-label [] property_value: Origin "R" xsd:string xref: uniprot.ptm:PTM-0498 -is_a: MOD:00677 -is_a: MOD:00902 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00683 @@ -14295,7 +14294,7 @@ def: "A protein modification that effectively removes neutral hydrogen atoms (pr subset: PSI-MOD-slim synonym: "dHRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:00675 +is_a: MOD:00675 ! oxidized residue [Term] id: MOD:00684 @@ -14319,8 +14318,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:7 xref: uniprot.ptm:PTM-0116 -is_a: MOD:00400 -is_a: MOD:00903 +is_a: MOD:00400 ! deamidated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:00685 @@ -14346,8 +14345,8 @@ property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string xref: Unimod:7 xref: uniprot.ptm:PTM-0117 -is_a: MOD:00400 -is_a: MOD:00907 +is_a: MOD:00400 ! deamidated residue +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:00686 @@ -14371,48 +14370,48 @@ property_value: MassMono "150.953635" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:162 -is_a: MOD:00007 -is_a: MOD:00905 +is_a: MOD:00007 ! selenium substitution for sulfur +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00687 name: thioether crosslinked residues def: "A protein modification that crosslinks two residues by formation of a thioether bond between a cysteine thiol and either an alkyl C as in lanthionine, or an aryl C as 2'-(S-cysteinyl)-L-histidine." [PubMed:18688235] -is_a: MOD:00033 -is_a: MOD:02044 +is_a: MOD:00033 ! crosslinked residues +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:00688 name: isopeptide crosslinked residues def: "A protein modification that crosslinks two residues with an amide bond where either the donor amino or carboxyl is not an alpha group." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:00689 name: disulfide crosslinked residues def: "A protein modification that crosslinks two cysteine residues by formation of a disulfide bond." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01619 +is_a: MOD:01619 ! multisulfide crosslinked residues [Term] id: MOD:00690 name: oxazole/thiazole ring crosslinked residues def: "A protein modification that crosslinks two residues by formation of an oxazole or thiazole ring." [PubMed:18688235] -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:00691 name: 5-imidazolinone ring crosslinked residues def: "A protein modification that crosslinks two residues by formation of an 5-imidazolinone ring." [PubMed:18688235] -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:00692 name: uncategorized crosslinked residues def: "A protein crosslink modification that is not chemically categorized." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:00693 @@ -14421,7 +14420,7 @@ def: "A protein modification that effectively replaces a hydrogen atom with an c subset: PSI-MOD-slim synonym: "GlycoRes" EXACT PSI-MOD-label [] property_value: Source "natural" xsd:string -is_a: MOD:00764 +is_a: MOD:00764 ! glycoconjugated residue [Term] id: MOD:00694 @@ -14430,7 +14429,7 @@ def: "A protein modification that effectively substitutes a halogen atom for a h subset: PSI-MOD-slim synonym: "halogenated residue" EXACT PSI-MOD-alternate [] synonym: "HalRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00695 @@ -14448,7 +14447,7 @@ property_value: DiffMono "79.956815" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:40 -is_a: MOD:00860 +is_a: MOD:00860 ! sulfur containing modified residue [Term] id: MOD:00696 @@ -14465,7 +14464,7 @@ property_value: DiffFormula "H 1 O 3 P 1" xsd:string property_value: DiffMono "79.966331" xsd:float property_value: Origin "X" xsd:string xref: Unimod:21 -is_a: MOD:00861 +is_a: MOD:00861 ! phosphorus containing modified residue [Term] id: MOD:00697 @@ -14477,7 +14476,7 @@ synonym: "Flavin adenine dinucleotide" RELATED Unimod-description [] synonym: "FlavRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00698 @@ -14485,7 +14484,7 @@ name: metal or metal cluster containing modified residue def: "A protein modification that effectively substitutes a metal atom or a metal cluster for hydrogen atoms, or coordinates a metal ion." [PubMed:18688235] subset: PSI-MOD-slim synonym: "MetalRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00699 @@ -14493,14 +14492,14 @@ name: porphyrin modified residue def: "A protein modification that effectively results from forming an adduct with a compound containing a porphyrin group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "PorphRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00700 name: tetrapyrrole modified residue def: "A protein modification that effectively results from forming an adduct with a compound containing a tetrapyrrole group." [PubMed:18688235] synonym: "TetrapyrRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00701 @@ -14508,7 +14507,7 @@ name: nucleotide or nucleic acid modified residue def: "A protein modification that effectively results from forming an adduct with a compound containing a nucleotide or a polynucleotide through formation of either a phosphodiester bond, a phosphoramide ester bond, or a glycosidic bond." [PubMed:18688235] subset: PSI-MOD-slim synonym: "NucRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00702 @@ -14518,7 +14517,7 @@ comment: In SILAC (stable isotope labelling of amino acids in cell culture), the subset: PSI-MOD-slim synonym: "IsoTagRes" EXACT PSI-MOD-label [] synonym: "SILAC" EXACT PSI-MOD-alternate [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00703 @@ -14526,8 +14525,8 @@ name: isoprenylated residue def: "A protein modification that effectively replaces a hydrogen atom with a group derived from an isoprene polymer, such as a geranyl (C10), farnesyl (C15) or geranylgeranyl (C20) group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "IpRes" EXACT PSI-MOD-label [] -is_a: MOD:00001 -is_a: MOD:01155 +is_a: MOD:00001 ! alkylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00704 @@ -14542,7 +14541,7 @@ property_value: DiffMono "-18.010565" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:23 -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00705 @@ -14563,7 +14562,7 @@ property_value: MassMono "99.068414" xsd:float property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0124 -is_a: MOD:00664 +is_a: MOD:00664 ! stereoisomerized residue [Term] id: MOD:00706 @@ -14582,8 +14581,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:401 xref: uniprot.ptm:PTM-0008 -is_a: MOD:00919 -is_a: MOD:01888 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01888 ! didehydrogenated residue [Term] id: MOD:00707 @@ -14593,8 +14592,8 @@ subset: PSI-MOD-slim synonym: "HyTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00677 -is_a: MOD:00919 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00708 @@ -14604,8 +14603,8 @@ subset: PSI-MOD-slim synonym: "SOxyCys" EXACT PSI-MOD-label [] property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00680 -is_a: MOD:00905 +is_a: MOD:00680 ! sulfur oxygenated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00709 @@ -14615,8 +14614,8 @@ subset: PSI-MOD-slim synonym: "SOxyMet" EXACT PSI-MOD-label [] property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00680 -is_a: MOD:00913 +is_a: MOD:00680 ! sulfur oxygenated residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00710 @@ -14625,7 +14624,7 @@ def: "A protein modification that effectively adds a proton and replaces two hyd comment: For N-terminal proline residues, dimethylation can effectively only be accomplished with a protonated imino group. This process accounts for both protonation and dimethylation. The alternative Me2Res process accounts only for dimethylation and not protonation. subset: PSI-MOD-slim synonym: "Me2+Res" EXACT PSI-MOD-label [] -is_a: MOD:00429 +is_a: MOD:00429 ! dimethylated residue [Term] id: MOD:00711 @@ -14640,7 +14639,7 @@ property_value: DiffMono "43.054227" xsd:float property_value: FormalCharge "1+" xsd:string property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 +is_a: MOD:00427 ! methylated residue [Term] id: MOD:00712 @@ -14650,8 +14649,8 @@ subset: PSI-MOD-slim synonym: "MePro" EXACT PSI-MOD-label [] property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00915 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00713 @@ -14661,8 +14660,8 @@ subset: PSI-MOD-slim synonym: "MeGlu" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00906 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00714 @@ -14671,8 +14670,8 @@ def: "A protein modification that effectively converts a glycine residue to a me synonym: "MeGly" EXACT PSI-MOD-label [] property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00908 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:00715 @@ -14681,8 +14680,8 @@ def: "A protein modification that effectively converts an L-isoleucine residue t synonym: "MeIle" EXACT PSI-MOD-label [] property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00910 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00910 ! modified L-isoleucine residue [Term] id: MOD:00716 @@ -14693,8 +14692,8 @@ synonym: "MeMet" EXACT PSI-MOD-label [] property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00427 -is_a: MOD:00913 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00717 @@ -14704,8 +14703,8 @@ subset: PSI-MOD-slim synonym: "MePhe" EXACT PSI-MOD-label [] property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00914 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:00718 @@ -14715,8 +14714,8 @@ synonym: "MeTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00427 -is_a: MOD:00919 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00719 @@ -14744,8 +14743,8 @@ property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:35 xref: uniprot.ptm:PTM-0469 -is_a: MOD:00709 -is_a: MOD:01854 +is_a: MOD:00709 ! sulfur oxygenated L-methionine +is_a: MOD:01854 ! sulfur monooxygenated residue [Term] id: MOD:00720 @@ -14765,7 +14764,7 @@ property_value: MassMono "147.035400" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0480 -is_a: MOD:00719 +is_a: MOD:00719 ! L-methionine sulfoxide [Term] id: MOD:00721 @@ -14782,7 +14781,7 @@ property_value: MassMono "147.035400" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string xref: uniprot.ptm:PTM-0481 -is_a: MOD:00719 +is_a: MOD:00719 ! L-methionine sulfoxide [Term] id: MOD:00722 @@ -14800,8 +14799,8 @@ property_value: MassMono "142.074228" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 -is_a: MOD:00599 -is_a: MOD:00659 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00659 ! methylated glutamine [Term] id: MOD:00723 @@ -14817,8 +14816,8 @@ property_value: MassAvg "171.22" xsd:float property_value: MassMono "171.113353" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00408 -is_a: MOD:00912 +is_a: MOD:00408 ! mono N-acetylated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00724 @@ -14837,15 +14836,15 @@ property_value: MassMono "151.074562" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 -is_a: MOD:00599 -is_a: MOD:00602 -is_a: MOD:00661 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00661 ! methylated histidine [Term] id: MOD:00725 name: complex glycosylation def: "A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a carbohydrate-like group linked through a glycosidic bond." [PubMed:18688235] -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00726 @@ -14855,7 +14854,7 @@ synonym: "Glc" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string replaced_by: MOD:00433 -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00727 @@ -14864,7 +14863,7 @@ def: "A protein modification that effectively replaces a hydrogen atom of an ami synonym: "Man" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00728 @@ -14873,7 +14872,7 @@ def: "A protein modification that effectively replaces a hydrogen atom of an ami synonym: "Gal" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00729 @@ -14888,7 +14887,7 @@ property_value: DiffFormula "C 5 H 8 O 4" xsd:string property_value: DiffMono "132.042259" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00730 @@ -14900,7 +14899,7 @@ property_value: DiffFormula "C 5 H 8 O 4" xsd:string property_value: DiffMono "132.042259" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00729 +is_a: MOD:00729 ! pentosylated residue [Term] id: MOD:00731 @@ -14912,7 +14911,7 @@ property_value: DiffFormula "C 5 H 8 O 4" xsd:string property_value: DiffMono "132.042259" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00729 +is_a: MOD:00729 ! pentosylated residue [Term] id: MOD:00732 @@ -14924,7 +14923,7 @@ property_value: DiffFormula "C 5 H 8 O 4" xsd:string property_value: DiffMono "132.042259" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00729 +is_a: MOD:00729 ! pentosylated residue [Term] id: MOD:00733 @@ -14935,7 +14934,7 @@ property_value: DiffAvg "203.19" xsd:float property_value: DiffFormula "C 8 H 13 N 1 O 5" xsd:string property_value: DiffMono "203.079373" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00436 +is_a: MOD:00436 ! N-acetylhexosaminylated residue [Term] id: MOD:00734 @@ -14948,7 +14947,7 @@ property_value: DiffAvg "203.19" xsd:float property_value: DiffFormula "C 8 H 13 N 1 O 5" xsd:string property_value: DiffMono "203.079373" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00436 +is_a: MOD:00436 ! N-acetylhexosaminylated residue [Term] id: MOD:00735 @@ -14960,7 +14959,7 @@ property_value: DiffFormula "C 6 H 8 O 6" xsd:string property_value: DiffMono "176.032088" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00736 @@ -14976,7 +14975,7 @@ property_value: DiffMono "146.057909" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: GNO:G02438LG -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00737 @@ -14991,43 +14990,43 @@ property_value: DiffMono "291.095417" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: GNO:G76685HR -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00738 name: iron containing modified residue def: "A protein modification that effectively substitutes an iron atom or a cluster containing iron for hydrogen atoms, or that coordinates an iron ion." [PubMed:18688235] synonym: "FeRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00739 name: iron-sulfur cluster containing modification def: "A protein modification that effectively substitutes a cluster of iron and sulfur atoms for hydrogen atoms." [PubMed:18688235] synonym: "FeSRes" EXACT PSI-MOD-label [] -is_a: MOD:00738 -is_a: MOD:00860 +is_a: MOD:00738 ! iron containing modified residue +is_a: MOD:00860 ! sulfur containing modified residue [Term] id: MOD:00740 name: manganese containing modified residue def: "A protein modification that effectively substitutes a manganese atom or a cluster containing manganese for hydrogen atoms, or that coordinates a manganese ion." [PubMed:18688235] synonym: "MnRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00741 name: nickel containing modified residue def: "A protein modification that effectively substitutes a nickel atom or a cluster containing nickel for hydrogen atoms, or that coordinates a nickel ion." [PubMed:18688235] synonym: "NiRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00742 name: copper containing modified residue def: "A protein modification that effectively substitutes a copper atom or a cluster containing copper for hydrogen atoms, or that coordinates a copper ion." [PubMed:18688235] synonym: "CuRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00743 @@ -15035,7 +15034,7 @@ name: molybdenum containing modified residue def: "A protein modification that effectively substitutes a molybdenum atom or a cluster containing molybdenum for hydrogen atoms, or that coordinates a molybdenum ion." [PubMed:18688235] subset: PSI-MOD-slim synonym: "MoRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00744 @@ -15043,8 +15042,8 @@ name: molybdenum pterin containing modification def: "A protein modification containing a molybdenum atom in a pterin ring system." [PubMed:18688235] subset: PSI-MOD-slim synonym: "MoPterRes" EXACT PSI-MOD-label [] -is_a: MOD:00743 -is_a: MOD:00748 +is_a: MOD:00743 ! molybdenum containing modified residue +is_a: MOD:00748 ! pterin modified residue [Term] id: MOD:00745 @@ -15052,14 +15051,14 @@ name: selenium containing residue def: "A protein modification that effectively substitutes a selenium atom or a cluster containing selenium for hydrogen atoms." [PubMed:18688235] subset: PSI-MOD-slim synonym: "SeRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00746 name: tungsten containing modified residue def: "A protein modification that effectively substitutes a tungsten atom or a cluster containing tungsten for hydrogen atoms, or that coordinates a tungsten ion." [PubMed:18688235] synonym: "WRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00747 @@ -15067,7 +15066,7 @@ name: sodium containing modified residue def: "A protein modification that effectively substitutes a sodium atom for a hydrogen atom." [PubMed:18688235] subset: PSI-MOD-slim synonym: "NaRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00748 @@ -15075,7 +15074,7 @@ name: pterin modified residue def: "A protein modification that effectively results from forming an adduct with a compound containing a pterin group." [PubMed:18688235] subset: PSI-MOD-slim synonym: "PterRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00749 @@ -15083,21 +15082,21 @@ name: sulfur substitution for oxygen def: "A protein modification that effectively substitutes a sulfur atom for an oxygen atom." [PubMed:18688235] subset: PSI-MOD-slim synonym: "S(O)Res" EXACT PSI-MOD-label [] -is_a: MOD:00860 +is_a: MOD:00860 ! sulfur containing modified residue [Term] id: MOD:00750 name: deoxyribonucleic acid linked residue def: "A protein modification that effectively crosslinks an amino acid residue and the 3'- or 5'-end of DNA through a phosphodiester bond." [PubMed:18688235] synonym: "DNARes" EXACT PSI-MOD-label [] -is_a: MOD:00701 +is_a: MOD:00701 ! nucleotide or nucleic acid modified residue [Term] id: MOD:00751 name: ribonucleic acid linked residue def: "a protein modification" [PubMed:18688235] synonym: "RNARes" EXACT PSI-MOD-label [] -is_a: MOD:00701 +is_a: MOD:00701 ! nucleotide or nucleic acid modified residue [Term] id: MOD:00752 @@ -15112,7 +15111,7 @@ property_value: DiffFormula "C 15 H 21 N 5 O 13 P 2" xsd:string property_value: DiffMono "541.061109" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02087 +is_a: MOD:02087 ! adenosine diphosphoribosyl (ADP-ribosyl) modified residue [Term] id: MOD:00753 @@ -15120,7 +15119,7 @@ name: chlorinated residue def: "A protein modification that effectively substitutes a chlorine atom for a hydrogen atom." [PubMed:18688235] synonym: "ClRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:00694 +is_a: MOD:00694 ! halogen containing residue [Term] id: MOD:00754 @@ -15128,7 +15127,7 @@ name: brominated residue def: "A protein modification that effectively substitutes a bromine atom for a hydrogen atom." [PubMed:18688235] synonym: "BrRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:00694 +is_a: MOD:00694 ! halogen containing residue [Term] id: MOD:00755 @@ -15137,7 +15136,7 @@ def: "A protein modification that effectively substitutes an iodine atom of a re subset: PSI-MOD-slim synonym: "IRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:00694 +is_a: MOD:00694 ! halogen containing residue [Term] id: MOD:00756 @@ -15157,8 +15156,8 @@ property_value: MassMono "115.063329" xsd:float property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0111 -is_a: MOD:00425 -is_a: MOD:00664 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00664 ! stereoisomerized residue [Term] id: MOD:00757 @@ -15181,7 +15180,7 @@ property_value: MassMono "275.100502" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0558 -is_a: MOD:00915 +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:00758 @@ -15206,7 +15205,7 @@ property_value: MassMono "316.127051" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0578 -is_a: MOD:01677 +is_a: MOD:01677 ! O4-(N-acetylamino)hexosyl-L-hydroxyproline [Term] id: MOD:00759 @@ -15224,8 +15223,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:307 xref: GNO:G59937CP -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00760 @@ -15243,8 +15242,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:311 xref: GNO:G10486CT -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00761 @@ -15257,7 +15256,7 @@ property_value: DiffMono "162.052823" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: GNO:G81399MY -is_a: MOD:00434 +is_a: MOD:00434 ! hexosylated residue [Term] id: MOD:00762 @@ -15275,8 +15274,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:309 xref: GNO:G35029YA -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00763 @@ -15294,15 +15293,15 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:310 xref: GNO:G72787SB -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:00764 name: glycoconjugated residue def: "A protein modification that effectively results from forming an adduct with a carbohydrate-like group either through enzymatic formation of a glycosidic bond, or through non-enzymatic glycation formation of a Schiff-base or an Amadori ketosamine residue adduct." [PubMed:18688235, PubMed:3743566] subset: PSI-MOD-slim -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00765 @@ -15336,8 +15335,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:312 xref: uniprot.ptm:PTM-0415 -is_a: MOD:00905 -is_a: MOD:01862 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01862 ! disulfide conjugated residue [Term] id: MOD:00766 @@ -15359,7 +15358,7 @@ id: MOD:00767 name: glycated residue def: "A modification produced in a non-enzymatic reaction between a carbohydrate carbonyl group (C1 of aldohexose or C2 of fructose) and a protein amino group to form a Schiff-base or an Amadori ketosamine residue adduct." [PubMed:18688235] property_value: Source "artifact" xsd:string -is_a: MOD:00764 +is_a: MOD:00764 ! glycoconjugated residue [Term] id: MOD:00768 @@ -15374,49 +15373,49 @@ property_value: MassAvg "83.09" xsd:float property_value: MassMono "83.037114" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00431 +is_a: MOD:00431 ! modified residue with a secondary neutral loss [Term] id: MOD:00769 name: residues isobaric at 71.0-71.1 Da def: "Natural or modified residues with a mass of 71.0-71.1 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00616 +is_a: MOD:00616 ! residues isobaric at a resolution below 0.1 Da [Term] id: MOD:00770 name: residues isobaric at a resolution below 0.01 Da def: "Natural or modified residues that are isobaric at a resolution below 0.01 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00616 +is_a: MOD:00616 ! residues isobaric at a resolution below 0.1 Da [Term] id: MOD:00771 name: residues isobaric at 166.98-167.00 Da def: "Natural or modified residues with a mass of 166.98-167.00 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00770 +is_a: MOD:00770 ! residues isobaric at a resolution below 0.01 Da [Term] id: MOD:00772 name: vanadium containing modified residue def: "A protein modification that effectively substitutes a vanadium atom or a cluster containing vanadium for hydrogen atoms, or that coordinates a vanadium ion." [PubMed:18688235] synonym: "VRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00773 name: residues isobaric at 181.00-181.02 Da def: "Natural or modified residues with a mass of 181.00-181.02 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00770 +is_a: MOD:00770 ! residues isobaric at a resolution below 0.01 Da [Term] id: MOD:00774 name: residues isobaric at 243.02-243.03 Da def: "Natural or modified residues with a mass of 243.02-243.03 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00770 +is_a: MOD:00770 ! residues isobaric at a resolution below 0.01 Da [Term] id: MOD:00775 @@ -15434,8 +15433,8 @@ property_value: MassMono "114.042927" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:348 -is_a: MOD:00909 -is_a: MOD:02088 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:02088 ! natural, standard, encoded residue substitution [Term] id: MOD:00776 @@ -15454,22 +15453,22 @@ property_value: MassMono "115.026943" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:349 -is_a: MOD:00909 -is_a: MOD:02088 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:02088 ! natural, standard, encoded residue substitution [Term] id: MOD:00777 name: residues isobaric at 182.96-182.98 Da def: "Natural or modified residues with a mass of 182.96-182.98 Da." [PubMed:18688235] -is_a: MOD:00770 -is_a: MOD:00778 +is_a: MOD:00770 ! residues isobaric at a resolution below 0.01 Da +is_a: MOD:00778 ! residues isobaric at 182.9-183.0 Da [Term] id: MOD:00778 name: residues isobaric at 182.9-183.0 Da def: "Natural or modified residues with a mass of 182.9-183.0 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00616 +is_a: MOD:00616 ! residues isobaric at a resolution below 0.1 Da [Term] id: MOD:00779 @@ -15501,8 +15500,8 @@ property_value: MassMono "156.053492" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00903 -is_a: MOD:01458 +is_a: MOD:00903 ! modified L-asparagine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00781 @@ -15519,8 +15518,8 @@ property_value: MassMono "179.069477" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00909 -is_a: MOD:01458 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00782 @@ -15537,8 +15536,8 @@ property_value: MassMono "156.102454" xsd:float property_value: Origin "L" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00911 -is_a: MOD:01458 +is_a: MOD:00911 ! modified L-leucine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00783 @@ -15558,8 +15557,8 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:36 xref: uniprot.ptm:PTM-0341 -is_a: MOD:00429 -is_a: MOD:00658 +is_a: MOD:00429 ! dimethylated residue +is_a: MOD:00658 ! methylated arginine [Term] id: MOD:00784 @@ -15576,8 +15575,8 @@ property_value: MassMono "189.078979" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00914 -is_a: MOD:01458 +is_a: MOD:00914 ! modified L-phenylalanine residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00785 @@ -15594,8 +15593,8 @@ property_value: MassMono "228.089878" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00918 -is_a: MOD:01458 +is_a: MOD:00918 ! modified L-tryptophan residue +is_a: MOD:01458 ! alpha-amino acetylated residue [Term] id: MOD:00786 @@ -15603,7 +15602,7 @@ name: deuterium substituted residue def: "A protein modification that effectively substitutes one or more (2)H deuterium atoms for (1)H protium atoms." [PubMed:18688235] subset: PSI-MOD-slim synonym: "D(H)Res" EXACT PSI-MOD-label [] -is_a: MOD:00839 +is_a: MOD:00839 ! (2)H deuterium labeled residue [Term] id: MOD:00787 @@ -15620,9 +15619,9 @@ property_value: MassMono "251.092259" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:362 -is_a: MOD:00848 -is_a: MOD:00861 -is_a: MOD:00916 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00788 @@ -15639,9 +15638,9 @@ property_value: MassMono "285.076609" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:363 -is_a: MOD:00848 -is_a: MOD:00861 -is_a: MOD:00919 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00789 @@ -15655,7 +15654,7 @@ property_value: DiffMono "111.041593" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:364 -is_a: MOD:01428 +is_a: MOD:01428 ! (13)C isotope tagged reagent [Term] id: MOD:00790 @@ -15669,7 +15668,7 @@ property_value: DiffMono "105.021464" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:365 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:00791 @@ -15687,8 +15686,8 @@ property_value: MassMono "131.046839" xsd:float property_value: Origin "Q" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:366 -relationship: derives_from MOD:00685 -is_a: MOD:00852 +relationship: derives_from MOD:00685 ! deamidated L-glutamine +is_a: MOD:00852 ! 1x(18)O labeled deamidated residue [Term] id: MOD:00792 @@ -15696,7 +15695,7 @@ name: deuterium monosubstituted residue def: "A protein modification that effectively substitutes one (2)H deuterium atom for one (1)H protium atom." [PubMed:18688235] subset: PSI-MOD-slim synonym: "D(H)1Res" EXACT PSI-MOD-label [] -is_a: MOD:00786 +is_a: MOD:00786 ! deuterium substituted residue [Term] id: MOD:00793 @@ -15726,8 +15725,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:368 xref: uniprot.ptm:PTM-0468 -is_a: MOD:00905 -is_a: MOD:01168 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01168 ! dehydroalanine [Term] id: MOD:00794 @@ -15763,7 +15762,7 @@ property_value: MassMono "189.045964" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:371 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00796 @@ -15784,7 +15783,7 @@ property_value: MassMono "114.079313" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:372 -is_a: MOD:00902 +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00797 @@ -15809,8 +15808,8 @@ property_value: MassMono "270.991559" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0424 -is_a: MOD:00861 -is_a: MOD:00905 +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00798 @@ -15826,7 +15825,7 @@ property_value: MassAvg "102.13" xsd:float property_value: MassMono "102.001360" xsd:float property_value: Origin "C" xsd:string xref: Unimod:374 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00799 @@ -15848,9 +15847,9 @@ property_value: MassMono "265.062008" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: uniprot.ptm:PTM-0624 -is_a: MOD:00426 -is_a: MOD:00476 -is_a: MOD:00905 +is_a: MOD:00426 ! S-glycosylated residue +is_a: MOD:00476 ! monogalactosylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00800 @@ -15868,10 +15867,10 @@ property_value: MassAvg "1172.80" xsd:float property_value: MassMono "1172.316610" xsd:float property_value: Origin "C, H" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:00772 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:00772 ! vanadium containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00801 @@ -15890,9 +15889,9 @@ property_value: MassAvg "1177.70" xsd:float property_value: MassMono "1177.308685" xsd:float property_value: Origin "C, H" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00802 @@ -15919,8 +15918,8 @@ property_value: MassAvg "254.10" xsd:float property_value: MassMono "253.998180" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00772 -is_a: MOD:02070 +is_a: MOD:00772 ! vanadium containing modified residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00803 @@ -15942,8 +15941,8 @@ property_value: MassMono "264.056863" xsd:float property_value: Origin "C, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0020 -is_a: MOD:02058 -is_a: MOD:01993 +is_a: MOD:02058 ! crosslinked L-tyrosine residue +is_a: MOD:01993 ! beta-carbon thioether crosslinked residues [Term] id: MOD:00804 @@ -15966,8 +15965,8 @@ property_value: MassMono "249.084852" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0573 -is_a: MOD:00002 -is_a: MOD:00433 +is_a: MOD:00002 ! O-glycosyl-L-serine +is_a: MOD:00433 ! monoglucosylated residue [Term] id: MOD:00805 @@ -15995,8 +15994,8 @@ property_value: MassMono "290.111401" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0580 -is_a: MOD:00448 -is_a: MOD:01675 +is_a: MOD:00448 ! mono-N-acetylaminoglucosylated residue +is_a: MOD:01675 ! O-(N-acetylamino)hexosyl-L-serine [Term] id: MOD:00806 @@ -16024,8 +16023,8 @@ property_value: MassMono "304.127051" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0582 -is_a: MOD:00448 -is_a: MOD:01676 +is_a: MOD:00448 ! mono-N-acetylaminoglucosylated residue +is_a: MOD:01676 ! O-(N-acetylamino)hexosyl-L-threonine [Term] id: MOD:00807 @@ -16049,9 +16048,9 @@ property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:385 xref: uniprot.ptm:PTM-0266 -is_a: MOD:00916 -is_a: MOD:01154 -is_a: MOD:01160 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01154 ! pyruvic acid +is_a: MOD:01160 ! deaminated residue [Term] id: MOD:00808 @@ -16073,8 +16072,8 @@ property_value: MassMono "249.084852" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0560 -is_a: MOD:00002 -is_a: MOD:00476 +is_a: MOD:00002 ! O-glycosyl-L-serine +is_a: MOD:00476 ! monogalactosylated residue [Term] id: MOD:00809 @@ -16096,8 +16095,8 @@ property_value: MassMono "263.100502" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0562 -is_a: MOD:00476 -is_a: MOD:01348 +is_a: MOD:00476 ! monogalactosylated residue +is_a: MOD:01348 ! O-hexosylated threonine [Term] id: MOD:00810 @@ -16120,8 +16119,8 @@ property_value: MassMono "249.084852" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0588 -is_a: MOD:00002 -is_a: MOD:00595 +is_a: MOD:00002 ! O-glycosyl-L-serine +is_a: MOD:00595 ! monomannosylated residue [Term] id: MOD:00811 @@ -16143,8 +16142,8 @@ property_value: MassMono "263.100502" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0591 -is_a: MOD:00595 -is_a: MOD:01348 +is_a: MOD:00595 ! monomannosylated residue +is_a: MOD:01348 ! O-hexosylated threonine [Term] id: MOD:00812 @@ -16171,8 +16170,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:295 xref: uniprot.ptm:PTM-0550 -is_a: MOD:00002 -is_a: MOD:00614 +is_a: MOD:00002 ! O-glycosyl-L-serine +is_a: MOD:00614 ! fucosylated residue [Term] id: MOD:00813 @@ -16198,8 +16197,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:295 xref: uniprot.ptm:PTM-0552 -is_a: MOD:00005 -is_a: MOD:00614 +is_a: MOD:00005 ! O-glycosyl-L-threonine +is_a: MOD:00614 ! fucosylated residue [Term] id: MOD:00814 @@ -16222,7 +16221,7 @@ property_value: MassMono "219.074287" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: uniprot.ptm:PTM-0598 -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:00815 @@ -16259,8 +16258,8 @@ property_value: MassMono "369.270150" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0283 -is_a: MOD:02005 -is_a: MOD:02006 +is_a: MOD:02005 ! S-acylated L-cysteine +is_a: MOD:02006 ! S-stearoylated residue [Term] id: MOD:00817 @@ -16280,8 +16279,8 @@ property_value: MassMono "322.204513" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0026 -is_a: MOD:00601 -is_a: MOD:01115 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:01115 ! isoprenylated tryptophan [Term] id: MOD:00818 @@ -16299,9 +16298,9 @@ property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:394 xref: uniprot.ptm:PTM-0139 -is_a: MOD:00764 -is_a: MOD:00861 -is_a: MOD:01155 +is_a: MOD:00764 ! glycoconjugated residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:00819 @@ -16328,7 +16327,7 @@ property_value: MassAvg "85.11" xsd:float property_value: MassMono "85.052764" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00820 @@ -16352,9 +16351,9 @@ property_value: MassAvg "108.10" xsd:float property_value: MassMono "108.032363" xsd:float property_value: Origin "D, G" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02043 -is_a: MOD:02047 -is_a: MOD:01882 +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01882 ! 5-imidazolinone ring crosslinked residues (Gly) [Term] id: MOD:00821 @@ -16376,9 +16375,9 @@ property_value: MassMono "173.038474" xsd:float property_value: Origin "A, C" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00395 -is_a: MOD:02040 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02040 ! crosslinked L-alanine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00822 @@ -16400,9 +16399,9 @@ property_value: MassMono "215.085424" xsd:float property_value: Origin "C, L" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00395 -is_a: MOD:02050 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02050 ! crosslinked L-leucine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00823 @@ -16424,9 +16423,9 @@ property_value: MassMono "233.041845" xsd:float property_value: Origin "C, M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00395 -is_a: MOD:02052 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02052 ! crosslinked L-methionine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00824 @@ -16451,8 +16450,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:400 xref: uniprot.ptm:PTM-0647 -is_a: MOD:00919 -is_a: MOD:01168 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01168 ! dehydroalanine [Term] id: MOD:00825 @@ -16474,9 +16473,9 @@ property_value: MassMono "249.069774" xsd:float property_value: Origin "C, F" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00395 -is_a: MOD:02053 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00826 @@ -16498,9 +16497,9 @@ property_value: MassMono "203.049038" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00395 -is_a: MOD:02056 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00827 @@ -16522,9 +16521,9 @@ property_value: MassMono "265.064688" xsd:float property_value: Origin "C, Y" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00395 -is_a: MOD:02058 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02058 ! crosslinked L-tyrosine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00828 @@ -16546,9 +16545,9 @@ property_value: MassMono "288.080673" xsd:float property_value: Origin "C, W" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00395 -is_a: MOD:02057 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02057 ! crosslinked L-tryptophan residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00829 @@ -16570,10 +16569,10 @@ property_value: MassMono "233.092617" xsd:float property_value: Origin "F, S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00885 -is_a: MOD:02053 -is_a: MOD:02055 -is_a: MOD:00954 +is_a: MOD:00885 ! ester crosslinked residues +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00830 @@ -16598,9 +16597,9 @@ property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0219 -is_a: MOD:01417 -is_a: MOD:01462 -is_a: MOD:01680 +is_a: MOD:01417 ! monomethylated proline +is_a: MOD:01462 ! N-methylated proline +is_a: MOD:01680 ! alpha-amino monomethylated residue [Term] id: MOD:00831 @@ -16619,8 +16618,8 @@ property_value: MassMono "317.122300" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0527 -is_a: MOD:00448 -is_a: MOD:01674 +is_a: MOD:00448 ! mono-N-acetylaminoglucosylated residue +is_a: MOD:01674 ! N4-(N-acetylamino)hexosyl-L-asparagine [Term] id: MOD:00832 @@ -16646,8 +16645,8 @@ property_value: MassMono "317.122300" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0512 -is_a: MOD:00563 -is_a: MOD:01674 +is_a: MOD:00563 ! mono-N-acetylaminogalactosylated residue +is_a: MOD:01674 ! N4-(N-acetylamino)hexosyl-L-asparagine [Term] id: MOD:00833 @@ -16672,8 +16671,8 @@ property_value: MassMono "276.095751" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0517 -is_a: MOD:00433 -is_a: MOD:01346 +is_a: MOD:00433 ! monoglucosylated residue +is_a: MOD:01346 ! N4-hexosylated asparagine [Term] id: MOD:00834 @@ -16698,7 +16697,7 @@ property_value: MassMono "274.116486" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0553 -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:00835 @@ -16727,9 +16726,9 @@ property_value: MassMono "85.016378" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:401 -is_a: MOD:00916 -is_a: MOD:01169 -is_a: MOD:01888 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01169 ! L-3-oxoalanine +is_a: MOD:01888 ! didehydrogenated residue [Term] id: MOD:00836 @@ -16737,14 +16736,14 @@ name: deuterium disubstituted residue def: "A protein modification that effectively substitutes two (2)H deuterium atoms for two (1)H protium atoms." [PubMed:18688235] subset: PSI-MOD-slim synonym: "D(H)2Res" EXACT PSI-MOD-label [] -is_a: MOD:00786 +is_a: MOD:00786 ! deuterium substituted residue [Term] id: MOD:00837 name: deuterium tetrasubstituted residue def: "A protein modification that effectively substitutes four (2)H deuterium atoms for four (1)H protium atoms." [PubMed:18688235] synonym: "D(H)4Res" EXACT PSI-MOD-label [] -is_a: MOD:00786 +is_a: MOD:00786 ! deuterium substituted residue [Term] id: MOD:00838 @@ -16762,77 +16761,77 @@ property_value: MassMono "116.102894" xsd:float property_value: Origin "L" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:262 -is_a: MOD:00585 -is_a: MOD:00911 +is_a: MOD:00585 ! deuterium trisubstituted residue +is_a: MOD:00911 ! modified L-leucine residue [Term] id: MOD:00839 name: (2)H deuterium labeled residue def: "A protein modification that effectively substitutes atoms of particular common isotopes with atoms of or groups containing deuteriumm, (2)H." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00702 +is_a: MOD:00702 ! isotope labeled residue [Term] id: MOD:00840 name: isocyanate reagent derivatized residue def: "A protein modification produced by formation of an adduct with an isocyanate compound." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00841 name: isothiocyanate reagent derivatized residue def: "A protein modification produced by formation of an adduct with an isothiocyanate compound." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00842 name: (13)C labeled residue def: "A protein modification that effectively substitutes atoms of particular common isotopes with atoms of or groups containing (13)C." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00702 +is_a: MOD:00702 ! isotope labeled residue [Term] id: MOD:00843 name: (15)N labeled residue def: "A protein modification that effectively substitutes atoms of particular common isotopes with atoms of or groups containing (15)N." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00702 +is_a: MOD:00702 ! isotope labeled residue [Term] id: MOD:00844 name: (18)O labeled residue def: "A protein modification that effectively substitutes atoms of particular common isotopes with atoms of or groups containing (18)O." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00702 +is_a: MOD:00702 ! isotope labeled residue [Term] id: MOD:00845 name: (18)O substituted residue def: "A protein modification that effectively substitutes one or more (18)O atoms for (16)O atoms." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00844 +is_a: MOD:00844 ! (18)O labeled residue [Term] id: MOD:00846 name: levuglandinyl (prostaglandin H2) adduct def: "stub" [PubMed:18688235] -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00847 name: (18)O disubstituted residue def: "A protein modification that effectively substitutes two (18)O atom for two (16)O atoms." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00845 +is_a: MOD:00845 ! (18)O substituted residue [Term] id: MOD:00848 name: reagent derivatized residue def: "A protein modification that is produced by formation of an adduct with a particular compound used as a reagent." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00849 @@ -16840,14 +16839,14 @@ name: potassium containing modified residue def: "A protein modification that effectively substitutes a potassium atom for a hydrogen atom." [PubMed:18688235] subset: PSI-MOD-slim synonym: "KRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:00850 name: unnatural residue def: "A protein modification that inserts or replaces a residue with an unnatural residue that is not considered to be derived from a natural residue by some chemical process." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00851 @@ -16856,8 +16855,8 @@ def: "A protein modification that effectively replaces a carboxamido group with subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00400 -is_a: MOD:00844 +is_a: MOD:00400 ! deamidated residue +is_a: MOD:00844 ! (18)O labeled residue [Term] id: MOD:00852 @@ -16870,7 +16869,7 @@ property_value: DiffMono "2.988262" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:366 -is_a: MOD:00851 +is_a: MOD:00851 ! (18)O labeled deamidated residue [Term] id: MOD:00853 @@ -16882,7 +16881,7 @@ property_value: DiffFormula "H -1 N -1 (16)O -1 (18)O 2" xsd:string property_value: DiffMono "4.992508" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00851 +is_a: MOD:00851 ! (18)O labeled deamidated residue [Term] id: MOD:00854 @@ -16899,8 +16898,8 @@ property_value: MassAvg "129.18" xsd:float property_value: MassMono "129.102239" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00912 -is_a: MOD:01699 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01699 ! protonated residue [Term] id: MOD:00855 @@ -16920,8 +16919,8 @@ property_value: MassMono "171.149190" xsd:float property_value: Origin "MOD:00854" xsd:string property_value: Source "natural" xsd:string xref: Unimod:37 -is_a: MOD:00430 -relationship: derives_from MOD:00854 +is_a: MOD:00430 ! trimethylated residue +relationship: derives_from MOD:00854 ! protonated L-lysine (L-lysinium) residue [Term] id: MOD:00856 @@ -16938,8 +16937,8 @@ property_value: MassMono "73.052215" xsd:float property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00901 -is_a: MOD:01700 +is_a: MOD:00901 ! modified L-alanine residue +is_a: MOD:01700 ! alpha-amino protonated residue [Term] id: MOD:00857 @@ -16959,8 +16958,8 @@ property_value: Origin "MOD:00856" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:37 -is_a: MOD:01687 -relationship: derives_from MOD:00856 +is_a: MOD:01687 ! alpha-amino trimethylated residue +relationship: derives_from MOD:00856 ! protonated L-alanine (L-alaninium) residue [Term] id: MOD:00858 @@ -16979,9 +16978,9 @@ property_value: MassMono "71.037114" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0113 -is_a: MOD:00862 -is_a: MOD:00916 -is_a: MOD:01161 +is_a: MOD:00862 ! D-alanine +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01161 ! deoxygenated residue [Term] id: MOD:00859 @@ -16990,21 +16989,21 @@ def: "A protein modification that can be derived from different natural residues subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00860 name: sulfur containing modified residue def: "A protein modification that produces an amino acid residue containing an exogenous sulfur atom." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00861 name: phosphorus containing modified residue def: "A protein modification that produces an amino acid residue containing a phosphorus atom." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00862 @@ -17019,8 +17018,8 @@ property_value: MassAvg "71.08" xsd:float property_value: MassMono "71.037114" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00664 -is_a: MOD:00859 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:00863 @@ -17039,8 +17038,8 @@ property_value: MassMono "101.047678" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0310 -is_a: MOD:00664 -is_a: MOD:00917 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:00864 @@ -17061,9 +17060,9 @@ property_value: MassAvg "618.34" xsd:float property_value: MassMono "617.870280" xsd:float property_value: Origin "C, C, C, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02070 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:00865 @@ -17082,8 +17081,8 @@ property_value: Origin "D" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0322 -is_a: MOD:00466 -is_a: MOD:00904 +is_a: MOD:00466 ! glycosylsphingolipidinositolated residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:00866 @@ -17099,8 +17098,8 @@ property_value: MassMono "129.042593" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0024 -is_a: MOD:00428 -is_a: MOD:00678 +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:00678 ! hydroxylated proline [Term] id: MOD:00867 @@ -17119,7 +17118,7 @@ property_value: MassAvg "251.17" xsd:float property_value: MassMono "251.947170" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01627 +is_a: MOD:01627 ! L-cysteinyl-L-selenocysteine [Term] id: MOD:00868 @@ -17129,7 +17128,7 @@ comment: These are produced exclusively by modification of amino acids acylated subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00009 +is_a: MOD:00009 ! natural residue [Term] id: MOD:00869 @@ -17153,8 +17152,8 @@ property_value: MassMono "71.037114" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0314 -is_a: MOD:00904 -is_a: MOD:02088 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:02088 ! natural, standard, encoded residue substitution [Term] id: MOD:00870 @@ -17171,7 +17170,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:411 -is_a: MOD:00840 +is_a: MOD:00840 ! isocyanate reagent derivatized residue [Term] id: MOD:00871 @@ -17188,8 +17187,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:412 -relationship: derives_from MOD:00870 -is_a: MOD:01431 +relationship: derives_from MOD:00870 ! phenyl isocyanate derivatized residue +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:00872 @@ -17225,7 +17224,7 @@ property_value: MassMono "387.127779" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:451 -is_a: MOD:00207 +is_a: MOD:00207 ! L-isoglutamyl-polyglutamic acid [Term] id: MOD:00874 @@ -17244,7 +17243,7 @@ property_value: MassMono "516.170372" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:452 -is_a: MOD:00207 +is_a: MOD:00207 ! L-isoglutamyl-polyglutamic acid [Term] id: MOD:00875 @@ -17261,7 +17260,7 @@ property_value: MassMono "645.212965" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:453 -is_a: MOD:00207 +is_a: MOD:00207 ! L-isoglutamyl-polyglutamic acid [Term] id: MOD:00876 @@ -17276,7 +17275,7 @@ property_value: DiffMono "161.068808" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:454 -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00877 @@ -17290,7 +17289,7 @@ property_value: DiffMono "154.110613" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:455 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00878 @@ -17304,7 +17303,7 @@ property_value: DiffMono "122.084398" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:456 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00879 @@ -17318,7 +17317,7 @@ property_value: DiffMono "175.042199" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:457 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00880 @@ -17332,8 +17331,8 @@ property_value: DiffMono "220.991214" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:464 -relationship: derives_from MOD:00584 -is_a: MOD:01428 +relationship: derives_from MOD:00584 ! 4-sulfophenyl isothiocyanate derivatized residue +is_a: MOD:01428 ! (13)C isotope tagged reagent [Term] id: MOD:00881 @@ -17365,7 +17364,7 @@ property_value: MassMono "146.051384" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:472 -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:00883 @@ -17386,7 +17385,7 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:2 -is_a: MOD:00674 +is_a: MOD:00674 ! amidated residue [Term] id: MOD:00884 @@ -17405,14 +17404,14 @@ property_value: MassAvg "146.21" xsd:float property_value: MassMono "146.051384" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00885 name: ester crosslinked residues def: "A protein modification that crosslinks two residues by formation of an ester bond." [PubMed:18688235] -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:00886 @@ -17433,14 +17432,14 @@ property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: Unimod:936 xref: uniprot.ptm:PTM-0052 -is_a: MOD:01913 +is_a: MOD:01913 ! monochlorinated L-tryptophan [Term] id: MOD:00887 name: methylated aspartic acid def: "A protein modification that effectively converts an L-aspartic acid residue to a methylated aspartic acid, such as aspartic acid 4-methyl ester." [PubMed:18688235] -is_a: MOD:00427 -is_a: MOD:00904 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:00888 @@ -17457,8 +17456,8 @@ property_value: MassMono "99.067865" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00915 -is_a: MOD:01700 +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01700 ! alpha-amino protonated residue [Term] id: MOD:00889 @@ -17476,11 +17475,11 @@ property_value: Origin "MOD:00888" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:36 -relationship: derives_from MOD:00075 -relationship: derives_from MOD:00888 -is_a: MOD:00712 -is_a: MOD:00710 -is_a: MOD:01686 +relationship: derives_from MOD:00075 ! N,N-dimethyl-L-proline +relationship: derives_from MOD:00888 ! protonated L-proline (L-prolinium) residue +is_a: MOD:00712 ! methylated proline +is_a: MOD:00710 ! protonated-dimethylated residue +is_a: MOD:01686 ! alpha-amino dimethylated residue [Term] id: MOD:00890 @@ -17501,8 +17500,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:21 xref: uniprot.ptm:PTM-0252 -is_a: MOD:00909 -is_a: MOD:01456 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01456 ! N-phosphorylated residue [Term] id: MOD:00891 @@ -17516,8 +17515,8 @@ property_value: MassAvg "87.08" xsd:float property_value: MassMono "87.032028" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00664 -is_a: MOD:00859 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:00892 @@ -17535,23 +17534,23 @@ property_value: MassMono "87.032028" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0309 -is_a: MOD:00891 -is_a: MOD:00905 +is_a: MOD:00891 ! D-serine +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00893 name: residues isobaric at 128.0-128.1 def: "Natural or modified residues with a mass of 128.0-128.1 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00616 +is_a: MOD:00616 ! residues isobaric at a resolution below 0.1 Da [Term] id: MOD:00894 name: residues isobaric at 128.058578 Da def: "Natural or modified resiues with a mass of 128.058578 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00569 -is_a: MOD:00893 +is_a: MOD:00569 ! residues isobaric at a resolution below 0.000001 Da +is_a: MOD:00893 ! residues isobaric at 128.0-128.1 [Term] id: MOD:00895 @@ -17564,8 +17563,8 @@ property_value: DiffFormula "C 27 H 31 N 9 O 15 P 2" xsd:string property_value: DiffMono "783.141485" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00697 -is_a: MOD:00861 +is_a: MOD:00697 ! flavin modified residue +is_a: MOD:00861 ! phosphorus containing modified residue [Term] id: MOD:00896 @@ -17575,8 +17574,8 @@ subset: PSI-MOD-slim synonym: "FMNRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00697 -is_a: MOD:00861 +is_a: MOD:00697 ! flavin modified residue +is_a: MOD:00861 ! phosphorus containing modified residue [Term] id: MOD:00897 @@ -17591,9 +17590,9 @@ property_value: MassMono "779.682531" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00905 -relationship: has_functional_parent MOD:00052 -relationship: has_functional_parent MOD:00228 +is_a: MOD:00905 ! modified L-cysteine residue +relationship: has_functional_parent MOD:00052 ! N-acetyl-L-cysteine +relationship: has_functional_parent MOD:00228 ! S-diphytanylglycerol diether-L-cysteine [Term] id: MOD:00898 @@ -17611,7 +17610,7 @@ property_value: MassMono "679.520945" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:377 -is_a: MOD:00116 +is_a: MOD:00116 ! S-diacylglycerol-L-cysteine [Term] id: MOD:00899 @@ -17620,9 +17619,9 @@ def: "A protein modification that effectively converts an L-cysteine residue to property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00905 -relationship: has_functional_parent MOD:00069 -relationship: has_functional_parent MOD:00116 +is_a: MOD:00905 ! modified L-cysteine residue +relationship: has_functional_parent MOD:00069 ! N-palmitoyl-L-cysteine +relationship: has_functional_parent MOD:00116 ! S-diacylglycerol-L-cysteine [Term] id: MOD:00900 @@ -17639,9 +17638,9 @@ property_value: MassMono "917.750611" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00899 -relationship: has_functional_parent MOD:00069 -relationship: has_functional_parent MOD:00898 +is_a: MOD:00899 ! N-palmitoyl-S-diacylglycerol-L-cysteine +relationship: has_functional_parent MOD:00069 ! N-palmitoyl-L-cysteine +relationship: has_functional_parent MOD:00898 ! S-(sn-1-2-oleoyl-3-palmitoyl-glycerol)cysteine [Term] id: MOD:00901 @@ -17650,7 +17649,7 @@ def: "A protein modification that modifies an L-alanine." [PubMed:18688235] subset: PSI-MOD-slim synonym: "ModAla" EXACT PSI-MOD-label [] property_value: Origin "A" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00902 @@ -17659,7 +17658,7 @@ def: "A protein modification that modifies an L-arginine residue." [PubMed:18688 subset: PSI-MOD-slim synonym: "ModArg" EXACT PSI-MOD-label [] property_value: Origin "R" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00903 @@ -17668,7 +17667,7 @@ def: "A protein modification that modifies an L-asparagine residue." [PubMed:186 subset: PSI-MOD-slim synonym: "ModAsn" EXACT PSI-MOD-label [] property_value: Origin "N" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00904 @@ -17677,7 +17676,7 @@ def: "A protein modification that modifies an L-aspartic acid residue." [PubMed: subset: PSI-MOD-slim synonym: "ModAsp" EXACT PSI-MOD-label [] property_value: Origin "D" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00905 @@ -17686,7 +17685,7 @@ def: "A protein modification that modifies an L-cysteine residue." [PubMed:18688 subset: PSI-MOD-slim synonym: "ModCys" EXACT PSI-MOD-label [] property_value: Origin "C" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00906 @@ -17695,7 +17694,7 @@ def: "A protein modification that modifies an L-glutamic acid residue." [PubMed: subset: PSI-MOD-slim synonym: "ModGlu" EXACT PSI-MOD-label [] property_value: Origin "E" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00907 @@ -17704,7 +17703,7 @@ def: "A protein modification that modifies an L-glutamine residue." [PubMed:1868 subset: PSI-MOD-slim synonym: "ModGln" EXACT PSI-MOD-label [] property_value: Origin "Q" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00908 @@ -17713,7 +17712,7 @@ def: "A protein modification that modifies a glycine residue." [PubMed:18688235] subset: PSI-MOD-slim synonym: "ModGly" EXACT PSI-MOD-label [] property_value: Origin "G" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00909 @@ -17722,7 +17721,7 @@ def: "A protein modification that modifies an L-histidine residue." [PubMed:1868 subset: PSI-MOD-slim synonym: "ModHis" EXACT PSI-MOD-label [] property_value: Origin "H" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00910 @@ -17731,7 +17730,7 @@ def: "A protein modification that modifies an L-isoleucine residue." [PubMed:186 subset: PSI-MOD-slim synonym: "ModIle" EXACT PSI-MOD-label [] property_value: Origin "I" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00911 @@ -17740,7 +17739,7 @@ def: "A protein modification that modifies an L-leucine residue." [PubMed:186882 subset: PSI-MOD-slim synonym: "ModLeu" EXACT PSI-MOD-label [] property_value: Origin "L" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00912 @@ -17749,7 +17748,7 @@ def: "A protein modification that modifies an L-lysine residue." [PubMed:1868823 subset: PSI-MOD-slim synonym: "ModLys" EXACT PSI-MOD-label [] property_value: Origin "K" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00913 @@ -17758,7 +17757,7 @@ def: "A protein modification that modifies an L-methionine residue." [PubMed:186 subset: PSI-MOD-slim synonym: "ModMet" EXACT PSI-MOD-label [] property_value: Origin "M" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00914 @@ -17767,7 +17766,7 @@ def: "A protein modification that modifies an L-phenylalanine residue." [PubMed: subset: PSI-MOD-slim synonym: "ModPhe" EXACT PSI-MOD-label [] property_value: Origin "F" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00915 @@ -17776,7 +17775,7 @@ def: "A protein modification that modifies an L-proline residue." [PubMed:186882 subset: PSI-MOD-slim synonym: "ModPro" EXACT PSI-MOD-label [] property_value: Origin "P" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00916 @@ -17785,7 +17784,7 @@ def: "A protein modification that modifies an L-serine residue." [PubMed:1868823 subset: PSI-MOD-slim synonym: "ModSer" EXACT PSI-MOD-label [] property_value: Origin "S" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00917 @@ -17794,7 +17793,7 @@ def: "A protein modification that modifies an L-threonine residue." [PubMed:1868 subset: PSI-MOD-slim synonym: "ModThr" EXACT PSI-MOD-label [] property_value: Origin "T" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00918 @@ -17803,7 +17802,7 @@ def: "A protein modification that modifies an L-tryptophan residue." [PubMed:186 subset: PSI-MOD-slim synonym: "ModTrp" EXACT PSI-MOD-label [] property_value: Origin "W" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00919 @@ -17812,7 +17811,7 @@ def: "A protein modification that modifies an L-tyrosine residue." [PubMed:18688 subset: PSI-MOD-slim synonym: "ModTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00920 @@ -17821,7 +17820,7 @@ def: "A protein modification that modifies an L-valine residue." [PubMed:1868823 subset: PSI-MOD-slim synonym: "ModVal" EXACT PSI-MOD-label [] property_value: Origin "V" xsd:string -is_a: MOD:01157 +is_a: MOD:01157 ! protein modification categorized by amino acid modified [Term] id: MOD:00921 @@ -17844,8 +17843,8 @@ property_value: MassMono "775.307341" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:494 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00923 @@ -17862,8 +17861,8 @@ property_value: MassMono "787.307341" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:495 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00924 @@ -17883,11 +17882,11 @@ property_value: Origin "K, T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0326 -is_a: MOD:00688 -is_a: MOD:02056 -is_a: MOD:02051 -is_a: MOD:00954 -is_a: MOD:01875 +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:00925 @@ -17902,7 +17901,7 @@ property_value: DiffMono "192.063388" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:490 -is_a: MOD:00693 +is_a: MOD:00693 ! glycosylated residue [Term] id: MOD:00926 @@ -17930,8 +17929,8 @@ property_value: DiffMono "34.063117" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:510 -is_a: MOD:00839 -is_a: MOD:00842 +is_a: MOD:00839 ! (2)H deuterium labeled residue +is_a: MOD:00842 ! (13)C labeled residue [Term] id: MOD:00928 @@ -17946,7 +17945,7 @@ property_value: DiffMono "227.224915" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:513 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00929 @@ -17966,8 +17965,8 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:512 xref: uniprot.ptm:PTM-0511 -is_a: MOD:00767 -is_a: MOD:00912 +is_a: MOD:00767 ! glycated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00930 @@ -17982,8 +17981,8 @@ property_value: MassMono "395.127682" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:514 -is_a: MOD:00848 -is_a: MOD:00919 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00931 @@ -17997,7 +17996,7 @@ property_value: DiffMono "234.161980" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:498 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00932 @@ -18014,8 +18013,8 @@ property_value: MassMono "401.031934" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:499 -is_a: MOD:00905 -is_a: MOD:01428 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01428 ! (13)C isotope tagged reagent [Term] id: MOD:00933 @@ -18033,8 +18032,8 @@ property_value: MassMono "210.111676" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:319 -is_a: MOD:00630 -is_a: MOD:00902 +is_a: MOD:00630 ! C3-H2-O adduct (+54 amu) of malondialdehyde with lysine or methylglyoxal with arginine. +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00934 @@ -18051,8 +18050,8 @@ property_value: MassMono "462.272987" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:506 -is_a: MOD:00846 -is_a: MOD:00902 +is_a: MOD:00846 ! levuglandinyl (prostaglandin H2) adduct +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00935 @@ -18067,8 +18066,8 @@ property_value: MassAvg "83.09" xsd:float property_value: MassMono "83.037114" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00431 -is_a: MOD:00913 +is_a: MOD:00431 ! modified residue with a secondary neutral loss +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:00936 @@ -18082,7 +18081,7 @@ property_value: DiffMono "348.193674" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:504 -is_a: MOD:00846 +is_a: MOD:00846 ! levuglandinyl (prostaglandin H2) adduct [Term] id: MOD:00937 @@ -18099,8 +18098,8 @@ property_value: MassMono "446.278072" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:505 -is_a: MOD:00846 -is_a: MOD:00902 +is_a: MOD:00846 ! levuglandinyl (prostaglandin H2) adduct +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:00938 @@ -18114,7 +18113,7 @@ property_value: DiffMono "332.198759" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:503 -is_a: MOD:00846 +is_a: MOD:00846 ! levuglandinyl (prostaglandin H2) adduct [Term] id: MOD:00939 @@ -18131,8 +18130,8 @@ property_value: MassMono "232.051778" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:500 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00940 @@ -18147,7 +18146,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:501 -is_a: MOD:00840 +is_a: MOD:00840 ! isocyanate reagent derivatized residue [Term] id: MOD:00941 @@ -18164,8 +18163,8 @@ property_value: MassMono "205.079944" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:488 -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00942 @@ -18185,8 +18184,8 @@ property_value: MassMono "132.120070" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:481 -is_a: MOD:00837 -is_a: MOD:00912 +is_a: MOD:00837 ! deuterium tetrasubstituted residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:00943 @@ -18200,7 +18199,7 @@ property_value: DiffMono "128.107539" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:476 -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00944 @@ -18214,8 +18213,8 @@ property_value: DiffMono "137.164030" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:477 -relationship: derives_from MOD:00943 -is_a: MOD:01431 +relationship: derives_from MOD:00943 ! 4-trimethylammoniumbutanoyl derivatized residue +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:00945 @@ -18234,13 +18233,13 @@ id: MOD:00946 name: crosslinked residues with loss of ammonia def: "A protein modification that crosslinks two residues with a covalent bond and the loss of ammonia." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:00947 name: DeltaMass def: "Entries from DeltaMass see http://www.abrf.org/index.cfm/dm.home?AvgMass=all." [PubMed:18688235] -is_a: MOD:00032 +is_a: MOD:00032 ! uncategorized protein modification [Term] id: MOD:00948 @@ -18281,9 +18280,9 @@ property_value: MassAvg "129.12" xsd:float property_value: MassMono "129.042593" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00906 -is_a: MOD:00957 -is_a: MOD:00960 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:00957 ! modified residue with neutral loss of carbon dioxide +is_a: MOD:00960 ! decarboxylated residue [Term] id: MOD:00952 @@ -18307,9 +18306,9 @@ property_value: MassMono "154.037842" xsd:float property_value: Origin "D, G" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0312 -is_a: MOD:02043 -is_a: MOD:00954 -is_a: MOD:01628 +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01628 ! (2-aminosuccinimidyl)acetic acid [Term] id: MOD:00953 @@ -18330,16 +18329,16 @@ property_value: MassAvg "198.18" xsd:float property_value: MassMono "198.064057" xsd:float property_value: Origin "E, S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02045 -is_a: MOD:00954 -is_a: MOD:01977 +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01977 ! O-(L-isoglutamyl)-L-serine [Term] id: MOD:00954 name: crosslinked residues with loss of water def: "A protein modification that crosslinks two residues with a covalent bond and the loss of water." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:00955 @@ -18355,9 +18354,9 @@ property_value: MassAvg "206.20" xsd:float property_value: MassMono "206.080376" xsd:float property_value: Origin "H, S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02048 -is_a: MOD:02055 -is_a: MOD:00954 +is_a: MOD:02048 ! crosslinked L-histidine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:00956 @@ -18371,7 +18370,7 @@ property_value: Formula "C 6 H 11 N 1 O 1" xsd:string property_value: MassAvg "113.16" xsd:float property_value: MassMono "113.084064" xsd:float property_value: Origin "M" xsd:string -is_a: MOD:01026 +is_a: MOD:01026 ! norleucine residue (Nle) [Term] id: MOD:00957 @@ -18383,7 +18382,7 @@ property_value: DiffFormula "C -1 H 0 N 0 O -2" xsd:string property_value: DiffMono "-43.989829" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00431 +is_a: MOD:00431 ! modified residue with a secondary neutral loss [Term] id: MOD:00958 @@ -18391,7 +18390,7 @@ name: crosslink between Arg and His sidechains def: "modification from DeltaMass" [DeltaMass:0] comment: Cross-link 2; From DeltaMass: Average Mass: -5 property_value: Origin "H, R" xsd:string -is_a: MOD:00692 +is_a: MOD:00692 ! uncategorized crosslinked residues [Term] id: MOD:00959 @@ -18399,7 +18398,7 @@ name: 3,3',5,5'-TerTyr (Crosslink) def: "modification from DeltaMass" [DeltaMass:0] comment: Cross-link 4; From DeltaMass: Average Mass: -4 property_value: Origin "Y, Y, Y, Y" xsd:string -is_a: MOD:00692 +is_a: MOD:00692 ! uncategorized crosslinked residues [Term] id: MOD:00960 @@ -18410,7 +18409,7 @@ property_value: DiffFormula "C -1 H 0 N 0 O -2" xsd:string property_value: DiffMono "-43.989829" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:00961 @@ -18425,9 +18424,9 @@ property_value: Formula "C 6 H 10 N 2 O 2 S 2" xsd:string property_value: MassAvg "206.28" xsd:float property_value: MassMono "206.018370" xsd:float property_value: Origin "MOD:00034" xsd:string -is_a: MOD:00905 -is_a: MOD:01473 -relationship: derives_from MOD:00034 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01473 ! hydrogenated residue +relationship: derives_from MOD:00034 ! L-cystine (cross-link) [Term] id: MOD:00962 @@ -18442,8 +18441,8 @@ property_value: MassAvg "188.23" xsd:float property_value: MassMono "188.094963" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00918 -is_a: MOD:01473 +is_a: MOD:00918 ! modified L-tryptophan residue +is_a: MOD:01473 ! hydrogenated residue [Term] id: MOD:00963 @@ -18469,7 +18468,7 @@ property_value: MassAvg "140.19" xsd:float property_value: MassMono "140.094963" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:00965 @@ -18486,7 +18485,7 @@ property_value: MassMono "116.017010" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:00966 @@ -18501,7 +18500,7 @@ property_value: MassAvg "198.22" xsd:float property_value: MassMono "198.079313" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00918 +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:00967 @@ -18516,7 +18515,7 @@ property_value: Formula "C 12 H 21 N 2 O 5" xsd:string property_value: MassAvg "273.31" xsd:float property_value: MassMono "273.145047" xsd:float property_value: Origin "K, K" xsd:string -is_a: MOD:02051 +is_a: MOD:02051 ! crosslinked L-lysine residue [Term] id: MOD:00968 @@ -18543,7 +18542,7 @@ def: "modification from DeltaMass" [DeltaMass:37] comment: From DeltaMass: Average Mass: 15 Average Mass Change:15 Notes:In going from Lys to hydroxy-allysine, two separate reactions are involved:1. the oxidative deamination converting Lys to allysine (-CH2NH2 being converted to -CHO) with a net mass change of -1;2.conversion of allysine to delta-hydroxy-allysine (-CH2-CHO being converted to -CH(OH)-CHO) with a mass change of +16. The net change from Lys to hydroxyallysine thus is +15. property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:00971 @@ -18558,8 +18557,8 @@ property_value: MassAvg "153.14" xsd:float property_value: MassMono "153.053826" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00909 -is_a: MOD:00677 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:00677 ! hydroxylated residue [Term] id: MOD:00972 @@ -18578,8 +18577,8 @@ property_value: MassMono "224.978926" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string xref: Unimod:340 -is_a: MOD:02086 -is_a: MOD:01912 +is_a: MOD:02086 ! brominated phenylalanine +is_a: MOD:01912 ! monobrominated residue [Term] id: MOD:00973 @@ -18588,7 +18587,7 @@ def: "modification from DeltaMass" [DeltaMass:355] comment: From DeltaMass: Average Mass: 32 Monoisotopic Mass Change:31.99 Average Mass Change:32 References:Amici A, Levine, RL, Tsai, L, and Stadtman, ER: Conversion of amino acid residues in proteins and amino acid homopolymers to carbonyl derivatives by metal-catalyzed oxidation reactions. Journal of Biological Chemistry 264: 3341-3346 1989.Rod Levine (unpublished) property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:00974 @@ -18603,8 +18602,8 @@ property_value: MassAvg "197.02" xsd:float property_value: MassMono "197.024356" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01046 -is_a: MOD:00987 +relationship: derives_from MOD:01046 ! 3'-chloro-L-tyrosine +is_a: MOD:00987 ! chlorinated tyrosine [Term] id: MOD:00975 @@ -18619,8 +18618,8 @@ property_value: MassAvg "199.02" xsd:float property_value: MassMono "199.021406" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01046 -is_a: MOD:00987 +relationship: derives_from MOD:01046 ! 3'-chloro-L-tyrosine +is_a: MOD:00987 ! chlorinated tyrosine [Term] id: MOD:00976 @@ -18644,7 +18643,7 @@ property_value: DiffAvg "43.96" xsd:float property_value: DiffFormula "H -2 Na 2" xsd:string property_value: DiffMono "43.963888" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00747 +is_a: MOD:00747 ! sodium containing modified residue [Term] id: MOD:00978 @@ -18653,7 +18652,7 @@ def: "modification from DeltaMass" [DeltaMass:345] comment: From DeltaMass: Average Mass: 51 Average Mass Change: 51 References:Lukszo, Patterson, Albericio, and Kates, Letters in Peptide Science 3, 157-166(1996) Notes:The side reaction can be very significant, and the level to which it occurs depends on how the C-terminal Cys is anchored and what the side-chain protecting group is. The mechanism involves piperidine-mediated beta-elimination of sulfur (with the protecting group on), followed by addition of piperidine across the C-terminaldehydroalanine. Since this last-mentioned step creates a chiral center, a mixture of diastereomers is formed which in special cases can be separatedby HPLC. Another problem with C-terminal Cys is racemization; some references in the review article by Andreu, Albericio, Sole, Munson, Ferrer, and Barany in Pennington-Dunn Peptide Synthesis and Purification Protocols, vol 35, 1994, pp. 91-169. property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:00979 @@ -18662,7 +18661,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 56 property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:00980 @@ -18684,8 +18683,8 @@ property_value: DiffAvg "60.07" xsd:float property_value: DiffFormula "H -2 K 1 Na 1" xsd:string property_value: DiffMono "59.937826" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00747 -is_a: MOD:00849 +is_a: MOD:00747 ! sodium containing modified residue +is_a: MOD:00849 ! potassium containing modified residue [Term] id: MOD:00982 @@ -18702,8 +18701,8 @@ property_value: MassAvg "150.05" xsd:float property_value: MassMono "150.953635" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00916 -is_a: MOD:02088 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:02088 ! natural, standard, encoded residue substitution [Term] id: MOD:00983 @@ -18712,7 +18711,7 @@ def: "modification from DeltaMass" [DeltaMass:67] comment: From DeltaMass: Average Mass: 67 Average Mass Change:67 References:http://www.abrf.org/archives/hmail/0008/0007.html Notes:1.) Get rid of the DBU. It can cause piperidine amides at Asp residues. The tbu ester side chain comes off during synthesis and the residue is trans-amidated with piperidine (+67Da by MS). If you haven't yet seen this, you will. Even \"normal\" 20% pip/DMF (NMP) will cause this, but less frequently. Literature exists for this; I don't remember the exact reference. David H. Singleton Scientist Pfizer Central Research PO Box 8118-101 Eastern Point Road Groton, CT 06340 (860)441-4404. property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:00984 @@ -18727,8 +18726,8 @@ property_value: MassAvg "230.99" xsd:float property_value: MassMono "230.985384" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01045 -is_a: MOD:00987 +relationship: derives_from MOD:01045 ! 3',5'-dichloro-L-tyrosine +is_a: MOD:00987 ! chlorinated tyrosine [Term] id: MOD:00985 @@ -18737,8 +18736,8 @@ def: "A protein modification that effectively substitutes a hydrogen atom of an subset: PSI-MOD-slim synonym: "HalTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string -is_a: MOD:00694 -is_a: MOD:00919 +is_a: MOD:00694 ! halogen containing residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:00986 @@ -18753,8 +18752,8 @@ property_value: MassAvg "232.98" xsd:float property_value: MassMono "232.982434" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01045 -is_a: MOD:00987 +relationship: derives_from MOD:01045 ! 3',5'-dichloro-L-tyrosine +is_a: MOD:00987 ! chlorinated tyrosine [Term] id: MOD:00987 @@ -18762,8 +18761,8 @@ name: chlorinated tyrosine def: "A protein modification that effectively substitutes a hydrogen atom of an L-tyrosine residue with a chlorine atom." [PubMed:18688235] synonym: "ClTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string -is_a: MOD:00753 -is_a: MOD:00985 +is_a: MOD:00753 ! chlorinated residue +is_a: MOD:00985 ! halogenated tyrosine [Term] id: MOD:00988 @@ -18771,8 +18770,8 @@ name: brominated tyrosine def: "A protein modification that effectively substitutes a hydrogen atom of an L-tyrosine residue with a bromine atom." [PubMed:18688235] synonym: "BrTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string -is_a: MOD:00754 -is_a: MOD:00985 +is_a: MOD:00754 ! brominated residue +is_a: MOD:00985 ! halogenated tyrosine [Term] id: MOD:00989 @@ -18797,8 +18796,8 @@ property_value: MassAvg "234.98" xsd:float property_value: MassMono "234.979484" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01045 -is_a: MOD:00987 +relationship: derives_from MOD:01045 ! 3',5'-dichloro-L-tyrosine +is_a: MOD:00987 ! chlorinated tyrosine [Term] id: MOD:00991 @@ -18813,7 +18812,7 @@ property_value: MassAvg "177.22" xsd:float property_value: MassMono "177.045964" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:00992 @@ -18828,7 +18827,7 @@ property_value: MassAvg "203.19" xsd:float property_value: MassMono "203.079373" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:00993 @@ -18841,7 +18840,7 @@ property_value: DiffFormula "C 6 H 4" xsd:string property_value: DiffMono "76.031300" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00994 @@ -18856,8 +18855,8 @@ property_value: MassAvg "240.97" xsd:float property_value: MassMono "240.973841" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01025 -is_a: MOD:01000 +relationship: derives_from MOD:01025 ! 3'-bromo-L-tyrosine +is_a: MOD:01000 ! monobrominated tyrosine [Term] id: MOD:00995 @@ -18872,8 +18871,8 @@ property_value: MassAvg "226.98" xsd:float property_value: MassMono "226.976879" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:00183 -is_a: MOD:02086 +relationship: derives_from MOD:00183 ! L-2'-bromophenylalanine +is_a: MOD:02086 ! brominated phenylalanine [Term] id: MOD:00996 @@ -18888,8 +18887,8 @@ property_value: MassAvg "242.97" xsd:float property_value: MassMono "242.971794" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01025 -is_a: MOD:01000 +relationship: derives_from MOD:01025 ! 3'-bromo-L-tyrosine +is_a: MOD:01000 ! monobrominated tyrosine [Term] id: MOD:00997 @@ -18902,7 +18901,7 @@ property_value: DiffFormula "C 6 H 10" xsd:string property_value: DiffMono "82.078250" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:00998 @@ -18911,8 +18910,8 @@ def: "A protein modification that effectively substitutes a hydrogen atom of an subset: PSI-MOD-slim synonym: "ITyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string -is_a: MOD:00755 -is_a: MOD:00985 +is_a: MOD:00755 ! iodinated residue +is_a: MOD:00985 ! halogenated tyrosine [Term] id: MOD:00999 @@ -18930,7 +18929,7 @@ name: monobrominated tyrosine def: "A protein modification that effectively substitutes one hydrogen atom of an L-tyrosine residue with one bromine atom." [PubMed:18688235] synonym: "Br1Tyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string -is_a: MOD:00988 +is_a: MOD:00988 ! brominated tyrosine [Term] id: MOD:01001 @@ -18949,7 +18948,7 @@ property_value: MassAvg "85.11" xsd:float property_value: MassMono "85.052764" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00850 +is_a: MOD:00850 ! unnatural residue [Term] id: MOD:01002 @@ -18961,7 +18960,7 @@ property_value: DiffFormula "C 4 H 7 N 1 O 1" xsd:string property_value: DiffMono "85.052764" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01003 @@ -18970,7 +18969,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 86 property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01004 @@ -18982,7 +18981,7 @@ property_value: DiffFormula "C 3 H 6 N 2 O 1" xsd:string property_value: DiffMono "86.048013" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01005 @@ -18992,7 +18991,7 @@ comment: From DeltaMass: Average Mass: 88 synonym: "StBu" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01006 @@ -19003,7 +19002,7 @@ synonym: "Dibromo" RELATED PSI-MS-label [] synonym: "Dibromo" RELATED Unimod-description [] property_value: Origin "Y" xsd:string xref: Unimod:534 -is_a: MOD:00988 +is_a: MOD:00988 ! brominated tyrosine [Term] id: MOD:01007 @@ -19015,7 +19014,7 @@ property_value: DiffFormula "C 7 H 6" xsd:string property_value: DiffMono "90.046950" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01008 @@ -19027,7 +19026,7 @@ property_value: DiffFormula "C 7 H 6" xsd:string property_value: DiffMono "90.046950" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01009 @@ -19041,8 +19040,8 @@ property_value: Formula "C 5 H 5 N 1 O 1" xsd:string property_value: MassAvg "95.10" xsd:float property_value: MassMono "95.037114" xsd:float property_value: Origin "P" xsd:string -is_a: MOD:00915 -is_a: MOD:01888 +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01888 ! didehydrogenated residue [Term] id: MOD:01010 @@ -19054,9 +19053,9 @@ property_value: DiffFormula "C 2 F 3 H -1 O 1" xsd:string property_value: DiffMono "95.982299" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00498 -is_a: MOD:00649 -is_a: MOD:00848 +is_a: MOD:00498 ! fluorinated residue +is_a: MOD:00649 ! acylated residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01011 @@ -19065,7 +19064,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 97 property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01012 @@ -19080,8 +19079,8 @@ property_value: MassAvg "302.27" xsd:float property_value: MassMono "301.987857" xsd:float property_value: Origin "MOD:00034" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:00034 -is_a: MOD:00675 +relationship: derives_from MOD:00034 ! L-cystine (cross-link) +is_a: MOD:00675 ! oxidized residue [Term] id: MOD:01013 @@ -19089,7 +19088,7 @@ name: tetramethylguanidinium termination by-product on amine def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 98 property_value: Origin "X" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01014 @@ -19097,7 +19096,7 @@ name: phosphate/sulphate adduct of proteins def: "modification from DeltaMass" [DeltaMass:358] comment: From DeltaMass: Average Mass: 98 Formula:H3PO4 or H2SO4 Monoisotopic Mass Change:97.97 Average Mass Change:98 Notes:Proteins may pick up non-covalent salt adducts during purification. Phosphate and sulphate salts are commonly used and may be observed as +98 amu adducts (or multiples thereof) forming ion pairs with basic residues. Monoisotopic masses H2SO4 97.967, H3PO4 97.977 property_value: Origin "X" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01015 @@ -19111,7 +19110,7 @@ property_value: MassAvg "99.13" xsd:float property_value: MassMono "99.068414" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00850 +is_a: MOD:00850 ! unnatural residue [Term] id: MOD:01016 @@ -19121,7 +19120,7 @@ comment: From DeltaMass: Average Mass: 100 synonym: "tBoc" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01017 @@ -19141,7 +19140,7 @@ comment: From DeltaMass: Average Mass: 104 synonym: "Meb" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01019 @@ -19151,7 +19150,7 @@ comment: From DeltaMass: Average Mass: 106 synonym: "HMP" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01020 @@ -19160,7 +19159,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 106 property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01021 @@ -19169,7 +19168,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 106 property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01022 @@ -19184,9 +19183,9 @@ property_value: MassAvg "111.14" xsd:float property_value: MassMono "111.068414" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00601 -is_a: MOD:00912 -is_a: MOD:01160 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01160 ! deaminated residue [Term] id: MOD:01023 @@ -19200,7 +19199,7 @@ property_value: Formula "Br 2 C 9 H 7 N 1 O 2" xsd:string property_value: MassAvg "320.97" xsd:float property_value: MassMono "318.884353" xsd:float property_value: Origin "Y" xsd:string -is_a: MOD:01006 +is_a: MOD:01006 ! dibrominated tyrosine [Term] id: MOD:01024 @@ -19223,9 +19222,9 @@ property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 xref: uniprot.ptm:PTM-0149 -is_a: MOD:00425 -is_a: MOD:00594 -is_a: MOD:00678 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00594 ! residues isobaric at 113.047678 Da +is_a: MOD:00678 ! hydroxylated proline [Term] id: MOD:01025 @@ -19239,7 +19238,7 @@ property_value: Formula "Br 1 C 9 H 8 N 1 O 2" xsd:string property_value: MassAvg "242.07" xsd:float property_value: MassMono "240.973841" xsd:float property_value: Origin "Y" xsd:string -is_a: MOD:01000 +is_a: MOD:01000 ! monobrominated tyrosine [Term] id: MOD:01026 @@ -19251,8 +19250,8 @@ property_value: MassAvg "113.16" xsd:float property_value: MassMono "113.084064" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00850 -is_a: MOD:00306 +is_a: MOD:00850 ! unnatural residue +is_a: MOD:00306 ! residues isobaric at 113.084064 Da [Term] id: MOD:01027 @@ -19262,7 +19261,7 @@ comment: From DeltaMass: Average Mass: 114 synonym: "Aoc" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01028 @@ -19277,8 +19276,8 @@ property_value: MassAvg "197.62" xsd:float property_value: MassMono "197.024356" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00987 -is_a: MOD:01911 +is_a: MOD:00987 ! chlorinated tyrosine +is_a: MOD:01911 ! monochlorinated residue [Term] id: MOD:01029 @@ -19292,7 +19291,7 @@ property_value: DiffFormula "C 4 H 4 O 3" xsd:string property_value: DiffMono "100.016044" xsd:float property_value: Origin "X" xsd:string xref: Unimod:64 -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:01030 @@ -19302,7 +19301,7 @@ comment: From DeltaMass: Average Mass: 117 synonym: "HOBt" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01031 @@ -19312,7 +19311,7 @@ comment: From DeltaMass: Average Mass: 118 synonym: "diMeBzl" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01032 @@ -19324,7 +19323,7 @@ property_value: DiffFormula "C 8 H 8 O 1" xsd:string property_value: DiffMono "120.057515" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01033 @@ -19337,7 +19336,7 @@ property_value: DiffFormula "C 8 H 8 O 1" xsd:string property_value: DiffMono "120.057515" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01034 @@ -19350,7 +19349,7 @@ property_value: DiffFormula "C 6 H 3 N 1 O 2" xsd:string property_value: DiffMono "121.016378" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01035 @@ -19360,7 +19359,7 @@ comment: From DeltaMass: Average Mass: 125 synonym: "ClBzl" EXACT DeltaMass-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01036 @@ -19387,7 +19386,7 @@ property_value: MassAvg "232.06" xsd:float property_value: MassMono "230.985384" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00987 +is_a: MOD:00987 ! chlorinated tyrosine [Term] id: MOD:01038 @@ -19425,7 +19424,7 @@ property_value: MassAvg "131.19" xsd:float property_value: MassMono "131.040485" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00850 +is_a: MOD:00850 ! unnatural residue [Term] id: MOD:01041 @@ -19436,7 +19435,7 @@ property_value: DiffAvg "134.13" xsd:float property_value: DiffFormula "C 8 H 6 O 2" xsd:string property_value: DiffMono "134.036779" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01042 @@ -19447,7 +19446,7 @@ property_value: DiffAvg "134.22" xsd:float property_value: DiffFormula "C 10 H 14" xsd:string property_value: DiffMono "134.109550" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01043 @@ -19458,7 +19457,7 @@ property_value: DiffAvg "135.12" xsd:float property_value: DiffFormula "C 7 H 5 N 1 O 2" xsd:string property_value: DiffMono "135.032028" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01044 @@ -19482,7 +19481,7 @@ property_value: MassAvg "232.06" xsd:float property_value: MassMono "230.985384" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01037 +is_a: MOD:01037 ! dichlorinated tyrosine [Term] id: MOD:01046 @@ -19497,7 +19496,7 @@ property_value: MassAvg "197.62" xsd:float property_value: MassMono "197.024356" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01028 +is_a: MOD:01028 ! monochlorinated L-tyrosine [Term] id: MOD:01047 @@ -19518,8 +19517,8 @@ property_value: MassMono "144.089878" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 -is_a: MOD:00425 -is_a: MOD:00681 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00681 ! hydroxylated lysine [Term] id: MOD:01048 @@ -19533,8 +19532,8 @@ property_value: MassAvg "112.11" xsd:float property_value: MassMono "112.039853" xsd:float property_value: Origin "X" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00601 -is_a: MOD:00859 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01049 @@ -19542,8 +19541,8 @@ name: halogenated histidine def: "A protein modification that effectively substitutes a hydrogen atom of an L-histidine residue with a halogen atom." [PubMed:18688235] synonym: "HalHis" EXACT PSI-MOD-label [] property_value: Origin "H" xsd:string -is_a: MOD:00694 -is_a: MOD:00909 +is_a: MOD:00694 ! halogen containing residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:01050 @@ -19552,7 +19551,7 @@ def: "modification from DeltaMass" [DeltaMass:180] comment: From DeltaMass: Average Mass: 148 Formula:C8H8O2N1 Monoisotopic Mass Change:148.064 Average Mass Change:148.165 property_value: Origin "A" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01051 @@ -19561,7 +19560,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 149 synonym: "NBz" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01052 @@ -19570,7 +19569,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 150 property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01053 @@ -19579,7 +19578,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 153 synonym: "Nps" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01054 @@ -19590,7 +19589,7 @@ synonym: "4-toluenesulphonyl" EXACT DeltaMass-label [] synonym: "Tos" EXACT DeltaMass-label [] synonym: "Tosyl" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01055 @@ -19599,7 +19598,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 154 synonym: "Npys" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01056 @@ -19614,8 +19613,8 @@ property_value: MassAvg "318.88" xsd:float property_value: MassMono "318.884353" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01023 -is_a: MOD:01006 +relationship: derives_from MOD:01023 ! 3',5'-dibromo-L-tyrosine +is_a: MOD:01006 ! dibrominated tyrosine [Term] id: MOD:01057 @@ -19630,8 +19629,8 @@ property_value: MassAvg "320.88" xsd:float property_value: MassMono "320.882306" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01023 -is_a: MOD:01006 +relationship: derives_from MOD:01023 ! 3',5'-dibromo-L-tyrosine +is_a: MOD:01006 ! dibrominated tyrosine [Term] id: MOD:01058 @@ -19640,7 +19639,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 159 synonym: "Dcb" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01059 @@ -19655,8 +19654,8 @@ property_value: MassAvg "322.88" xsd:float property_value: MassMono "322.880260" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:01023 -is_a: MOD:01006 +relationship: derives_from MOD:01023 ! 3',5'-dibromo-L-tyrosine +is_a: MOD:01006 ! dibrominated tyrosine [Term] id: MOD:01060 @@ -19683,8 +19682,8 @@ property_value: MassMono "160.030649" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:4 -is_a: MOD:00397 -is_a: MOD:00905 +is_a: MOD:00397 ! iodoacetamide derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01061 @@ -19707,8 +19706,8 @@ property_value: MassMono "161.014664" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:6 -is_a: MOD:00399 -is_a: MOD:00905 +is_a: MOD:00399 ! iodoacetic acid derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01062 @@ -19738,15 +19737,15 @@ property_value: Formula "C 10 H 11 N 1 O 1" xsd:string property_value: MassAvg "161.20" xsd:float property_value: MassMono "161.084064" xsd:float property_value: Origin "F" xsd:string -is_a: MOD:00599 -is_a: MOD:00717 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00717 ! methylated phenylalanine [Term] id: MOD:01064 name: inositol def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 162 -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01065 @@ -19758,7 +19757,7 @@ property_value: DiffFormula "C 6 H 10 O 5" xsd:string property_value: DiffMono "162.052823" xsd:float property_value: TermSpec "N-term" xsd:string xref: Unimod:41 -is_a: MOD:00767 +is_a: MOD:00767 ! glycated residue [Term] id: MOD:01066 @@ -19766,8 +19765,8 @@ name: halogenated phenylalanine def: "A protein modification that effectively substitutes a hydrogen atom of an L-phenylalanine residue with a halogen atom." [PubMed:18688235] synonym: "HalPhe" EXACT PSI-MOD-label [] property_value: Origin "F" xsd:string -is_a: MOD:00694 -is_a: MOD:00914 +is_a: MOD:00694 ! halogen containing residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:01067 @@ -19775,7 +19774,7 @@ name: linker attached to peptide in Fmoc peptide synthesis def: "modification from DeltaMass" [DeltaMass:341] comment: From DeltaMass: Average Mass: 162 Average Mass Change:162 Notes: (from the ABRF discussion list archive) There may be ... things in the reagent K that would allow cleavage of the peptide to occur at the wrong place...in this case it removes the dimethoxybenzyl group first inactivating that site for cleavage, and it goes after tne next amide bond closer to the resin. Try the TFA/TIS/water/EDT cocktail...TFA = 92%, TIS =3%, and water is at 5%. .. had this issue on longer peptides.. and by increasing the amount of water a little bit... able to elminate this problem. property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01068 @@ -19783,8 +19782,8 @@ name: halogenated tryptophan def: "A protein modification that effectively substitutes a hydrogen atom of an L-tryptophan residue with a halogen atom." [PubMed:18688235] synonym: "HalTrp" EXACT PSI-MOD-label [] property_value: Origin "W" xsd:string -is_a: MOD:00694 -is_a: MOD:00918 +is_a: MOD:00694 ! halogen containing residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01069 @@ -19795,7 +19794,7 @@ property_value: DiffAvg "166.09" xsd:float property_value: DiffFormula "C 6 H 2 N 2 O 4" xsd:string property_value: DiffMono "166.001457" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01070 @@ -19807,7 +19806,7 @@ property_value: DiffAvg "166.05" xsd:float property_value: DiffFormula "C 6 F 5 H -1" xsd:string property_value: DiffMono "165.984191" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01071 @@ -19819,7 +19818,7 @@ property_value: DiffFormula "C 13 H 10" xsd:string property_value: DiffMono "166.078250" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01072 @@ -19831,7 +19830,7 @@ property_value: DiffAvg "38.09" xsd:float property_value: DiffFormula "H -1 K 1" xsd:string property_value: DiffMono "37.955882" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00849 +is_a: MOD:00849 ! potassium containing modified residue [Term] id: MOD:01073 @@ -19843,7 +19842,7 @@ property_value: DiffFormula "C 8 Cl 1 H 6 O 2" xsd:string property_value: DiffMono "169.005632" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01074 @@ -19854,14 +19853,14 @@ property_value: DiffFormula "C 12 H 9 O 1" xsd:string property_value: DiffMono "169.065340" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01075 name: mercury containing modified residue def: "A protein modification that effectively substitutes a mercury atom or a cluster containing mercury for hydrogen atoms, or that coordinates a mercury ion." [PubMed:18688235] synonym: "HgRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:01076 @@ -19881,7 +19880,7 @@ name: ethanedithiol/TFA cyclic adduct def: "modification from DeltaMass" [DeltaMass:216] comment: From DeltaMass: Average Mass: 172 Average Mass Change:172 References:[1]. Sieber,P.(1987) Modification of tryptophan residues during acidolysis of4-methoxy-2,3,6-trimethylbenzenesulfonyl groups. Effects of scavengers. Tetrahedron Lett., 28(15),1637-1640. Notes: TFA-cyclic dithioketal by-product is formed when Trp-containing peptide is subjected to prolonged TFA/EDT treatment [1]. See structure at http://www.abrf.org/images/misc/dmass172.gif. Additional discussion of this adduct, and how to avoid it, can befound in Methods in Enzymology 289, 67 (1997) property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01078 @@ -19901,7 +19900,7 @@ property_value: MassMono "160.067034" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:472 -is_a: MOD:00917 +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01079 @@ -19920,8 +19919,8 @@ property_value: MassAvg "174.22" xsd:float property_value: MassMono "174.046299" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01080 @@ -19945,7 +19944,7 @@ comment: From DeltaMass: Average Mass: 177. CAUTION - mass does not match formul property_value: DiffAvg "178.14" xsd:float property_value: DiffFormula "C 6 H 10 O 6" xsd:string property_value: DiffMono "178.047738" xsd:float -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01082 @@ -19974,8 +19973,8 @@ property_value: MassAvg "177.20" xsd:float property_value: MassMono "177.078979" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00916 -is_a: MOD:01008 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01008 ! benzyl (Bzl) and benzyl ester (OBzl) modified residue [Term] id: MOD:01084 @@ -19992,7 +19991,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:6 -is_a: MOD:00399 +is_a: MOD:00399 ! iodoacetic acid derivatized residue [Term] id: MOD:01085 @@ -20008,8 +20007,8 @@ property_value: MassMono "316.114475" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00909 -is_a: MOD:00006 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:00006 ! N-glycosylated residue [Term] id: MOD:01086 @@ -20018,7 +20017,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 179 synonym: "4Nz" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01087 @@ -20028,7 +20027,7 @@ property_value: DiffAvg "179.42" xsd:float property_value: DiffFormula "C 6 Cl 3 H 1" xsd:string property_value: DiffMono "177.914383" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01088 @@ -20040,7 +20039,7 @@ property_value: DiffFormula "C 10 H 12 O 3" xsd:string property_value: DiffMono "180.078644" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01089 @@ -20049,7 +20048,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 180 synonym: "Xan" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01090 @@ -20066,7 +20065,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:4 -is_a: MOD:00397 +is_a: MOD:00397 ! iodoacetamide derivatized residue [Term] id: MOD:01091 @@ -20082,8 +20081,8 @@ property_value: MassAvg "181.62" xsd:float property_value: MassMono "181.029442" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01066 -is_a: MOD:01911 +is_a: MOD:01066 ! halogenated phenylalanine +is_a: MOD:01911 ! monochlorinated residue [Term] id: MOD:01092 @@ -20092,7 +20091,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 182 synonym: "Mts" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01093 @@ -20104,7 +20103,7 @@ property_value: MassAvg "184.24" xsd:float property_value: MassMono "184.121178" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01094 @@ -20124,7 +20123,7 @@ property_value: MassMono "186.100442" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:6 -is_a: MOD:00399 +is_a: MOD:00399 ! iodoacetic acid derivatized residue [Term] id: MOD:01095 @@ -20150,8 +20149,8 @@ property_value: MassAvg "191.23" xsd:float property_value: MassMono "191.094629" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00917 -is_a: MOD:01008 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01008 ! benzyl (Bzl) and benzyl ester (OBzl) modified residue [Term] id: MOD:01097 @@ -20166,8 +20165,8 @@ property_value: MassAvg "193.26" xsd:float property_value: MassMono "193.056135" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00905 -is_a: MOD:01008 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01008 ! benzyl (Bzl) and benzyl ester (OBzl) modified residue [Term] id: MOD:01098 @@ -20179,7 +20178,7 @@ property_value: MassAvg "197.24" xsd:float property_value: MassMono "197.084064" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00850 +is_a: MOD:00850 ! unnatural residue [Term] id: MOD:01099 @@ -20196,7 +20195,7 @@ property_value: MassMono "198.040247" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00904 +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:01100 @@ -20204,7 +20203,7 @@ name: HMP (hydroxymethylphenyl)/TFA adduct def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 201 with no citation. property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01101 @@ -20239,7 +20238,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 212 with no citation. synonym: "Mtr" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01105 @@ -20248,7 +20247,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 213 with no citation. synonym: "BrZ" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01106 @@ -20264,8 +20263,8 @@ property_value: MassAvg "214.22" xsd:float property_value: MassMono "214.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00409 -is_a: MOD:00918 +is_a: MOD:00409 ! N-formylated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01107 @@ -20280,8 +20279,8 @@ property_value: MassAvg "219.24" xsd:float property_value: MassMono "219.089543" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00906 -is_a: MOD:01008 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01008 ! benzyl (Bzl) and benzyl ester (OBzl) modified residue [Term] id: MOD:01108 @@ -20297,8 +20296,8 @@ property_value: MassAvg "219.24" xsd:float property_value: MassMono "219.089543" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00906 -is_a: MOD:01007 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01007 ! anisyl modified residue [Term] id: MOD:01109 @@ -20306,7 +20305,7 @@ name: 9-fluorenylmethyloxycarbonyl (Fmoc) def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 222 with no citation. property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01110 @@ -20315,8 +20314,8 @@ def: "A protein modification that effectively replaces a hydrogen atom of an L-c subset: PSI-MOD-slim synonym: "IpCys" EXACT PSI-MOD-label [] property_value: Origin "C" xsd:string -is_a: MOD:00703 -is_a: MOD:00905 +is_a: MOD:00703 ! isoprenylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01111 @@ -20330,7 +20329,7 @@ property_value: DiffAvg "226.27" xsd:float property_value: DiffFormula "C 15 H 14 O 2" xsd:string property_value: DiffMono "226.099380" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01112 @@ -20346,7 +20345,7 @@ property_value: MassAvg "233.27" xsd:float property_value: MassMono "233.116427" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01113 @@ -20355,7 +20354,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 238 with no citation. synonym: "Bpoc" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01114 @@ -20368,7 +20367,7 @@ property_value: DiffAvg "242.32" xsd:float property_value: DiffFormula "C 19 H 14" xsd:string property_value: DiffMono "242.109550" xsd:float property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01115 @@ -20376,8 +20375,8 @@ name: isoprenylated tryptophan def: "A protein modification that effectively replaces a hydrogen atom of an L-tryptophan residue with a group derived from an isoprene polymer, such as a geranyl (C10), farnesyl (C15) or geranylgeranyl (C20)." [PubMed:18688235] synonym: "IpTrp" EXACT PSI-MOD-label [] property_value: Origin "W" xsd:string -is_a: MOD:00703 -is_a: MOD:00918 +is_a: MOD:00703 ! isoprenylated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01116 @@ -20394,9 +20393,9 @@ property_value: MassMono "338.215375" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00905 -relationship: has_functional_parent MOD:00111 -relationship: has_functional_parent MOD:00114 +is_a: MOD:00905 ! modified L-cysteine residue +relationship: has_functional_parent MOD:00111 ! S-farnesyl-L-cysteine +relationship: has_functional_parent MOD:00114 ! L-cysteine methyl ester [Term] id: MOD:01117 @@ -20405,7 +20404,7 @@ def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 252 with no citation. synonym: "Pbf" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01118 @@ -20421,8 +20420,8 @@ property_value: MassMono "396.080806" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00909 -is_a: MOD:00006 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:00006 ! N-glycosylated residue [Term] id: MOD:01119 @@ -20439,9 +20438,9 @@ property_value: MassMono "406.277976" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00905 -relationship: has_functional_parent MOD:00113 -relationship: has_functional_parent MOD:00114 +is_a: MOD:00905 ! modified L-cysteine residue +relationship: has_functional_parent MOD:00113 ! S-geranylgeranyl-L-cysteine +relationship: has_functional_parent MOD:00114 ! L-cysteine methyl ester [Term] id: MOD:01120 @@ -20461,7 +20460,7 @@ property_value: DiffFormula "C 14 H 18 O 3 S 1" xsd:string property_value: DiffMono "266.097665" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01652 +is_a: MOD:01652 ! sulfonyl halide reagent derivatized residue [Term] id: MOD:01121 @@ -20470,7 +20469,7 @@ def: "modification from DeltaMass" [DeltaMass:280] comment: From DeltaMass: Average Mass: 272 Average Mass Change: 272 synonym: "Mmt" EXACT DeltaMass-label [] property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01122 @@ -20500,7 +20499,7 @@ property_value: Formula "C 12 H 22 N 2 O 6" xsd:string property_value: MassAvg "290.32" xsd:float property_value: MassMono "290.147786" xsd:float property_value: Origin "K" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01125 @@ -20530,7 +20529,7 @@ name: N-glycolneuraminic acid def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 307 with no citation. synonym: "NeuGc" EXACT DeltaMass-label [] -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01129 @@ -20545,7 +20544,7 @@ name: SucPhencarb Lysyl def: "modification from DeltaMass" [DeltaMass:297] comment: From DeltaMass: Average Mass: 327 Formula: C17H17O3N4 Monoisotopic Mass Change: 327.122 Average Mass Change: 327.342 property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01131 @@ -20576,9 +20575,9 @@ property_value: MassMono "354.210290" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00905 -relationship: has_functional_parent MOD:00112 -relationship: has_functional_parent MOD:00114 +is_a: MOD:00905 ! modified L-cysteine residue +relationship: has_functional_parent MOD:00112 ! S-12-hydroxyfarnesyl-L-cysteine +relationship: has_functional_parent MOD:00114 ! L-cysteine methyl ester [Term] id: MOD:01134 @@ -20586,14 +20585,14 @@ name: fluorescein labelling of peptide N-terminal using NHS ester def: "modification from DeltaMass" [DeltaMass:306] comment: From DeltaMass: Average Mass: 359 Formula: C21H11O6 Monoisotopic Mass Change: 359.055 Average Mass Change: 359.315 Notes: Using the DHB matrix at low pH the carboxyl group and one of the oxygens on the flurorescein molecule are protinated so the delta mass is 2Da higher than most text book illustrations would indicate. See Bioconjugate Techniques by Greg Hermanson, Academic Press, page 305, figure 204. Text books of course just show the coupling reaction at neutral or basic pH. property_value: Source "artifact" xsd:string -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01135 name: Hex-HexNAc def: "modification from DeltaMass" [DeltaMass:0] comment: From DeltaMass: Average Mass: 365 with no citation. -is_a: MOD:00947 +is_a: MOD:00947 ! DeltaMass [Term] id: MOD:01136 @@ -20618,8 +20617,8 @@ property_value: MassAvg "394.53" xsd:float property_value: MassMono "394.192628" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00902 -is_a: MOD:01120 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:01120 ! 2,2,5,7,8-pentamethylchroman-6-sulfonyl chloride derivatized residue [Term] id: MOD:01138 @@ -20657,8 +20656,8 @@ property_value: MassMono "414.856624" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: Unimod:130 -is_a: MOD:00501 -is_a: MOD:00998 +is_a: MOD:00501 ! diiodinated residue +is_a: MOD:00998 ! iodinated tyrosine [Term] id: MOD:01141 @@ -20675,8 +20674,8 @@ property_value: MassAvg "422.54" xsd:float property_value: MassMono "422.198776" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00902 -is_a: MOD:01120 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:01120 ! 2,2,5,7,8-pentamethylchroman-6-sulfonyl chloride derivatized residue [Term] id: MOD:01142 @@ -20700,8 +20699,8 @@ property_value: MassAvg "687.81" xsd:float property_value: MassMono "687.272670" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00700 -is_a: MOD:00905 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01143 @@ -20726,8 +20725,8 @@ property_value: MassAvg "790.95" xsd:float property_value: MassMono "790.281854" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00700 -is_a: MOD:02044 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:01144 @@ -20744,7 +20743,7 @@ property_value: MassAvg "654.05" xsd:float property_value: MassMono "653.505295" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00116 +is_a: MOD:00116 ! S-diacylglycerol-L-cysteine [Term] id: MOD:01145 @@ -20762,9 +20761,9 @@ property_value: MassMono "821.237910" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0672 -is_a: MOD:02087 -is_a: MOD:00909 -relationship: derives_from MOD:00049 +is_a: MOD:02087 ! adenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00909 ! modified L-histidine residue +relationship: derives_from MOD:00049 ! 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine [Term] id: MOD:01146 @@ -20782,8 +20781,8 @@ property_value: MassAvg "886.68" xsd:float property_value: MassMono "886.150669" xsd:float property_value: Origin "C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00895 -is_a: MOD:00905 +is_a: MOD:00895 ! FAD modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01147 @@ -20800,8 +20799,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1761 xref: GNO:G20956ZV -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:01148 @@ -20810,10 +20809,10 @@ def: "A protein modification that effectively crosslinks the N6-amino of a pepti subset: PSI-MOD-slim property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:01875 -relationship: contains MOD:00134 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01875 ! N6-acylated L-lysine +relationship: contains MOD:00134 ! N6-glycyl-L-lysine [Term] id: MOD:01149 @@ -20822,10 +20821,10 @@ def: "A protein modification that effectively crosslinks the N6-amino of a pepti subset: PSI-MOD-slim property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:01875 -relationship: contains MOD:00134 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01875 ! N6-acylated L-lysine +relationship: contains MOD:00134 ! N6-glycyl-L-lysine [Term] id: MOD:01150 @@ -20834,10 +20833,10 @@ def: "A protein modification that effectively crosslinks the N6-amino of a pepti subset: PSI-MOD-slim property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02051 -is_a: MOD:02047 -is_a: MOD:01875 -relationship: contains MOD:00134 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01875 ! N6-acylated L-lysine +relationship: contains MOD:00134 ! N6-glycyl-L-lysine [Term] id: MOD:01151 @@ -20849,7 +20848,7 @@ property_value: DiffFormula "C 0 H -3 N 0 O -4 P -1" xsd:string property_value: DiffMono "-97.976895" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00432 +is_a: MOD:00432 ! modified residue with neutral loss of phosphate [Term] id: MOD:01152 @@ -20863,7 +20862,7 @@ property_value: DiffFormula "C 1 H 0 N 0 O 2" xsd:string property_value: DiffMono "43.989829" xsd:float property_value: Origin "X" xsd:string xref: Unimod:299 -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01153 @@ -20877,7 +20876,7 @@ property_value: DiffFormula "C 1 H 2 N 0 O 0 S 1" xsd:string property_value: DiffMono "45.987721" xsd:float property_value: Origin "X" xsd:string xref: Unimod:39 -is_a: MOD:01886 +is_a: MOD:01886 ! thiolated residue [Term] id: MOD:01154 @@ -20893,29 +20892,29 @@ property_value: MassAvg "71.06" xsd:float property_value: MassMono "71.013304" xsd:float property_value: Origin "X" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00769 -is_a: MOD:00859 +is_a: MOD:00769 ! residues isobaric at 71.0-71.1 Da +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01155 name: lipoconjugated residue def: "A protein modification that effectively results from forming an adduct with a compound containing a lipid-like group either through acylation, alkylation, or amidation." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01156 name: protein modification categorized by chemical process def: "Modified amino acid residue derived from a natural amino acid by a real or hypothetical chemical process." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00000 +is_a: MOD:00000 ! protein modification [Term] id: MOD:01157 name: protein modification categorized by amino acid modified def: "A protein modification considered either as modified amino acid residues derived from natural amino acids, as a replacement by another natural amino acid, or as a replacement by an unnatural amino acid." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00000 +is_a: MOD:00000 ! protein modification [Term] id: MOD:01158 @@ -20923,9 +20922,9 @@ name: modified L-selenocysteine residue def: "A protein modification that modifies an L-selenocysteine residue." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "U" xsd:string -is_a: MOD:00745 -is_a: MOD:01157 -relationship: derives_from MOD:00031 +is_a: MOD:00745 ! selenium containing residue +is_a: MOD:01157 ! protein modification categorized by amino acid modified +relationship: derives_from MOD:00031 ! L-selenocysteine residue [Term] id: MOD:01159 @@ -20933,7 +20932,7 @@ name: peptidoglycanated residue def: "A protein modification that effectively attaches a residue to murein peptidoglycan by either a pentaglycine linker peptide or a peptide-like L-alanyl-D-glutamyl-2,6-diaminopimelic acid linkage." [PubMed:18688235] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00764 +is_a: MOD:00764 ! glycoconjugated residue [Term] id: MOD:01160 @@ -20947,7 +20946,7 @@ property_value: DiffFormula "C 0 H -3 N -1 O 0" xsd:string property_value: DiffMono "-17.026549" xsd:float property_value: Origin "X" xsd:string xref: Unimod:385 -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01161 @@ -20962,7 +20961,7 @@ property_value: DiffFormula "C 0 H 0 N 0 O -1" xsd:string property_value: DiffMono "-15.994915" xsd:float property_value: Origin "X" xsd:string xref: Unimod:447 -is_a: MOD:01472 +is_a: MOD:01472 ! reduced residue [Term] id: MOD:01162 @@ -20980,7 +20979,7 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:308 xref: GNO:G83555HU -is_a: MOD:00725 +is_a: MOD:00725 ! complex glycosylation [Term] id: MOD:01163 @@ -20995,7 +20994,7 @@ property_value: DiffFormula "C 10 H 12 N 5 O 7 P 1" xsd:string property_value: DiffMono "345.047434" xsd:float property_value: Origin "X" xsd:string xref: Unimod:413 -is_a: MOD:00701 +is_a: MOD:00701 ! nucleotide or nucleic acid modified residue [Term] id: MOD:01164 @@ -21009,7 +21008,7 @@ property_value: DiffFormula "C 17 H 19 N 4 O 8 P 1" xsd:string property_value: DiffMono "438.094050" xsd:float property_value: Origin "X" xsd:string xref: Unimod:442 -is_a: MOD:00697 +is_a: MOD:00697 ! flavin modified residue [Term] id: MOD:01165 @@ -21025,7 +21024,7 @@ property_value: DiffFormula "C 10 H 12 N 5 O 6 P 1" xsd:string property_value: DiffMono "329.052520" xsd:float property_value: Origin "X" xsd:string xref: Unimod:405 -is_a: MOD:00701 +is_a: MOD:00701 ! nucleotide or nucleic acid modified residue [Term] id: MOD:01166 @@ -21040,7 +21039,7 @@ property_value: DiffFormula "C 9 H 11 N 2 O 8 P 1" xsd:string property_value: DiffMono "306.025302" xsd:float property_value: Origin "X" xsd:string xref: Unimod:417 -is_a: MOD:00701 +is_a: MOD:00701 ! nucleotide or nucleic acid modified residue [Term] id: MOD:01167 @@ -21053,7 +21052,7 @@ property_value: DiffFormula "C 40 H 47 Mo 1 N 20 O 26 P 4 S 4" xsd:string property_value: DiffMono "1572.985775" xsd:float property_value: Origin "X" xsd:string xref: Unimod:424 -is_a: MOD:00744 +is_a: MOD:00744 ! molybdenum pterin containing modification [Term] id: MOD:01168 @@ -21075,7 +21074,7 @@ property_value: MassAvg "69.06" xsd:float property_value: MassMono "69.021464" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01169 @@ -21096,7 +21095,7 @@ property_value: MassAvg "85.06" xsd:float property_value: MassMono "85.016378" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01170 @@ -21110,7 +21109,7 @@ property_value: DiffMono "70.005479" xsd:float property_value: Origin "X" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:422 -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01171 @@ -21135,8 +21134,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1 xref: uniprot.ptm:PTM-0233 -is_a: MOD:00644 -is_a: MOD:01186 +is_a: MOD:00644 ! mono O-acetylated residue +is_a: MOD:01186 ! monoacetylated L-threonine [Term] id: MOD:01172 @@ -21155,8 +21154,8 @@ property_value: Origin "A" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0144 -is_a: MOD:00466 -is_a: MOD:00901 +is_a: MOD:00466 ! glycosylsphingolipidinositolated residue +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:01173 @@ -21175,8 +21174,8 @@ property_value: Origin "N" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0145 -is_a: MOD:00466 -is_a: MOD:00903 +is_a: MOD:00466 ! glycosylsphingolipidinositolated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:01174 @@ -21196,8 +21195,8 @@ property_value: MassMono "419.213030" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0447 -is_a: MOD:00905 -is_a: MOD:01155 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:01175 @@ -21218,8 +21217,8 @@ property_value: MassAvg "689.83" xsd:float property_value: MassMono "689.288320" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00700 -is_a: MOD:00905 +is_a: MOD:00700 ! tetrapyrrole modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01176 @@ -21243,8 +21242,8 @@ property_value: MassAvg "237.30" xsd:float property_value: MassMono "237.147727" xsd:float property_value: Origin "K, K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00692 -is_a: MOD:02051 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02051 ! crosslinked L-lysine residue [Term] id: MOD:01177 @@ -21267,7 +21266,7 @@ property_value: MassMono "227.090606" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0416 -is_a: MOD:00909 +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:01178 @@ -21287,7 +21286,7 @@ property_value: MassAvg "191.16" xsd:float property_value: MassMono "190.988843" xsd:float property_value: Origin "D" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00904 +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:01179 @@ -21309,8 +21308,8 @@ property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0178 -is_a: MOD:01461 -is_a: MOD:01686 +is_a: MOD:01461 ! N-methylated alanine +is_a: MOD:01686 ! alpha-amino dimethylated residue [Term] id: MOD:01180 @@ -21330,8 +21329,8 @@ property_value: MassAvg "73.05" xsd:float property_value: MassMono "73.016378" xsd:float property_value: Origin "G" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00425 -is_a: MOD:00908 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:01181 @@ -21358,8 +21357,8 @@ property_value: MassMono "129.042593" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:34 -is_a: MOD:00393 -is_a: MOD:01681 +is_a: MOD:00393 ! O-methylated residue +is_a: MOD:01681 ! monomethylated L-aspartic acid [Term] id: MOD:01182 @@ -21386,9 +21385,9 @@ property_value: MassMono "1021.193931" xsd:float property_value: Origin "C, H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0681 -is_a: MOD:02044 -is_a: MOD:02048 -is_a: MOD:01621 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02048 ! crosslinked L-histidine residue +is_a: MOD:01621 ! flavin crosslinked residues [Term] id: MOD:01183 @@ -21417,8 +21416,8 @@ property_value: MassAvg "298.08" xsd:float property_value: MassMono "299.891620" xsd:float property_value: Origin "U, U" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00692 -is_a: MOD:01158 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:01158 ! modified L-selenocysteine residue [Term] id: MOD:01184 @@ -21446,7 +21445,7 @@ property_value: MassAvg "298.08" xsd:float property_value: MassMono "299.891620" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01185 @@ -21475,8 +21474,8 @@ property_value: MassAvg "114.10" xsd:float property_value: MassMono "114.042927" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00674 -is_a: MOD:00904 +is_a: MOD:00674 ! amidated residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:01186 @@ -21489,8 +21488,8 @@ property_value: DiffFormula "C 2 H 2 N 0 O 1" xsd:string property_value: DiffMono "42.010565" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00394 -is_a: MOD:00917 +is_a: MOD:00394 ! monoacetylated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01187 @@ -21515,7 +21514,7 @@ property_value: MassMono "237.147727" xsd:float property_value: Origin "O" xsd:string property_value: Source "natural" xsd:string xref: Unimod:435 -is_a: MOD:00868 +is_a: MOD:00868 ! natural, non-standard encoded residue [Term] id: MOD:01188 @@ -21532,7 +21531,7 @@ property_value: MassMono "253.147476" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:212 -is_a: MOD:00562 +is_a: MOD:00562 ! N-ethyl iodoacetamide-d5 [Term] id: MOD:01189 @@ -21549,7 +21548,7 @@ property_value: MassMono "193.093332" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:212 -is_a: MOD:00562 +is_a: MOD:00562 ! N-ethyl iodoacetamide-d5 [Term] id: MOD:01190 @@ -21580,7 +21579,7 @@ property_value: MassMono "188.061949" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:211 -is_a: MOD:00561 +is_a: MOD:00561 ! N-ethyl iodoacetamide-d0 [Term] id: MOD:01192 @@ -21597,7 +21596,7 @@ property_value: MassMono "248.116092" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:211 -is_a: MOD:00561 +is_a: MOD:00561 ! N-ethyl iodoacetamide-d0 [Term] id: MOD:01193 @@ -21614,8 +21613,8 @@ property_value: MassMono "222.082684" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:264 -is_a: MOD:00917 -is_a: MOD:00586 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:00586 ! pyridyl thiol modified residue [Term] id: MOD:01194 @@ -21632,8 +21631,8 @@ property_value: MassMono "208.067034" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:264 -is_a: MOD:00916 -is_a: MOD:00586 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:00586 ! pyridyl thiol modified residue [Term] id: MOD:01195 @@ -21650,7 +21649,7 @@ property_value: MassMono "232.121178" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:136 -is_a: MOD:00505 +is_a: MOD:00505 ! benzoyl labeling reagent light form (N-term and K) [Term] id: MOD:01196 @@ -21686,7 +21685,7 @@ property_value: MassMono "320.121966" xsd:float property_value: Origin "Q" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:490 -is_a: MOD:00925 +is_a: MOD:00925 ! heptosylated residue [Term] id: MOD:01198 @@ -21704,7 +21703,7 @@ property_value: MassMono "279.095417" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:490 -is_a: MOD:00925 +is_a: MOD:00925 ! heptosylated residue [Term] id: MOD:01199 @@ -21722,7 +21721,7 @@ property_value: MassMono "348.164499" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:490 -is_a: MOD:00925 +is_a: MOD:00925 ! heptosylated residue [Term] id: MOD:01200 @@ -21740,7 +21739,7 @@ property_value: MassMono "293.111067" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:490 -is_a: MOD:00925 +is_a: MOD:00925 ! heptosylated residue [Term] id: MOD:01201 @@ -21758,7 +21757,7 @@ property_value: MassMono "320.158351" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:490 -is_a: MOD:00925 +is_a: MOD:00925 ! heptosylated residue [Term] id: MOD:01202 @@ -21776,7 +21775,7 @@ property_value: MassMono "306.106316" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:490 -is_a: MOD:00925 +is_a: MOD:00925 ! heptosylated residue [Term] id: MOD:01203 @@ -21794,8 +21793,8 @@ property_value: MassMono "247.132077" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:25 -is_a: MOD:00418 -is_a: MOD:01875 +is_a: MOD:00418 ! pyridylacetylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01204 @@ -21812,7 +21811,7 @@ property_value: MassMono "83.037114" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:526 -is_a: MOD:00913 +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:01205 @@ -21829,8 +21828,8 @@ property_value: MassMono "1034.355057" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:160 -is_a: MOD:00528 -is_a: MOD:00916 +is_a: MOD:00528 ! Hex1HexNAc1NeuAc2 glycosylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01206 @@ -21847,8 +21846,8 @@ property_value: MassMono "1048.370707" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:160 -is_a: MOD:00528 -is_a: MOD:00005 +is_a: MOD:00528 ! Hex1HexNAc1NeuAc2 glycosylated residue +is_a: MOD:00005 ! O-glycosyl-L-threonine [Term] id: MOD:01207 @@ -21865,8 +21864,8 @@ property_value: MassMono "1061.365956" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:160 -is_a: MOD:00528 -is_a: MOD:00160 +is_a: MOD:00528 ! Hex1HexNAc1NeuAc2 glycosylated residue +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:01208 @@ -21881,7 +21880,7 @@ property_value: DiffMono "61.921772" xsd:float property_value: Origin "X" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:531 -is_a: MOD:00742 +is_a: MOD:00742 ! copper containing modified residue [Term] id: MOD:01209 @@ -21898,8 +21897,8 @@ property_value: MassAvg "177.63" xsd:float property_value: MassMono "176.948715" xsd:float property_value: Origin "D" xsd:string xref: Unimod:531 -is_a: MOD:00742 -is_a: MOD:02066 +is_a: MOD:00742 ! copper containing modified residue +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue [Term] id: MOD:01210 @@ -21916,8 +21915,8 @@ property_value: MassAvg "191.65" xsd:float property_value: MassMono "190.964366" xsd:float property_value: Origin "E" xsd:string xref: Unimod:531 -is_a: MOD:00742 -is_a: MOD:02068 +is_a: MOD:00742 ! copper containing modified residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue [Term] id: MOD:01211 @@ -21936,8 +21935,8 @@ property_value: MassMono "255.158292" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:29 -is_a: MOD:01813 -is_a: MOD:01875 +is_a: MOD:01813 ! morpholine-2-acetylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01212 @@ -21958,8 +21957,8 @@ property_value: MassMono "185.116427" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:4 -is_a: MOD:00397 -is_a: MOD:00912 +is_a: MOD:00397 ! iodoacetamide derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01213 @@ -21978,8 +21977,8 @@ property_value: MassMono "194.080376" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:4 -is_a: MOD:00397 -is_a: MOD:00909 +is_a: MOD:00397 ! iodoacetamide derivatized residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:01214 @@ -22013,8 +22012,8 @@ property_value: MassMono "172.048407" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:4 -is_a: MOD:00397 -is_a: MOD:00904 +is_a: MOD:00397 ! iodoacetamide derivatized residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:01216 @@ -22033,8 +22032,8 @@ property_value: MassMono "186.064057" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:4 -is_a: MOD:00397 -is_a: MOD:00906 +is_a: MOD:00397 ! iodoacetamide derivatized residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01217 @@ -22051,7 +22050,7 @@ property_value: MassMono "270.031042" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:285 -is_a: MOD:00605 +is_a: MOD:00605 ! Sulfanilic Acid (SA), light C12 [Term] id: MOD:01218 @@ -22068,7 +22067,7 @@ property_value: MassMono "284.046692" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:285 -is_a: MOD:00605 +is_a: MOD:00605 ! Sulfanilic Acid (SA), light C12 [Term] id: MOD:01219 @@ -22085,7 +22084,7 @@ property_value: MassMono "276.051171" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:286 -is_a: MOD:00606 +is_a: MOD:00606 ! Sulfanilic Acid (SA), heavy C13 [Term] id: MOD:01220 @@ -22102,7 +22101,7 @@ property_value: MassMono "290.066822" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:286 -is_a: MOD:00606 +is_a: MOD:00606 ! Sulfanilic Acid (SA), heavy C13 [Term] id: MOD:01221 @@ -22120,8 +22119,8 @@ property_value: MassMono "129.042593" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:122 -is_a: MOD:02004 -is_a: MOD:01483 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01483 ! O-formylated residue [Term] id: MOD:01222 @@ -22139,8 +22138,8 @@ property_value: MassMono "115.026943" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:122 -is_a: MOD:02003 -is_a: MOD:01483 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01483 ! O-formylated residue [Term] id: MOD:01223 @@ -22158,7 +22157,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:126 -is_a: MOD:00497 +is_a: MOD:00497 ! 3-sulfanylpropanoyl (N-term and Lys) [Term] id: MOD:01224 @@ -22178,7 +22177,7 @@ property_value: MassMono "216.093249" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:126 -is_a: MOD:00497 +is_a: MOD:00497 ! 3-sulfanylpropanoyl (N-term and Lys) [Term] id: MOD:01225 @@ -22197,8 +22196,8 @@ property_value: MassMono "181.053907" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:127 -is_a: MOD:00498 -is_a: MOD:00985 +is_a: MOD:00498 ! fluorinated residue +is_a: MOD:00985 ! halogenated tyrosine [Term] id: MOD:01226 @@ -22216,8 +22215,8 @@ property_value: MassMono "204.069891" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:127 -is_a: MOD:00498 -is_a: MOD:01068 +is_a: MOD:00498 ! fluorinated residue +is_a: MOD:01068 ! halogenated tryptophan [Term] id: MOD:01227 @@ -22236,8 +22235,8 @@ property_value: MassMono "165.058992" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:127 -is_a: MOD:00498 -is_a: MOD:01066 +is_a: MOD:00498 ! fluorinated residue +is_a: MOD:01066 ! halogenated phenylalanine [Term] id: MOD:01228 @@ -22258,8 +22257,8 @@ property_value: MassMono "288.959976" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:129 -is_a: MOD:00500 -is_a: MOD:00998 +is_a: MOD:00500 ! monoiodinated residue +is_a: MOD:00998 ! iodinated tyrosine [Term] id: MOD:01229 @@ -22277,8 +22276,8 @@ property_value: MassMono "262.955560" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:129 -is_a: MOD:00500 -is_a: MOD:01049 +is_a: MOD:00500 ! monoiodinated residue +is_a: MOD:01049 ! halogenated histidine [Term] id: MOD:01230 @@ -22295,7 +22294,7 @@ property_value: MassMono "233.116427" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:365 -is_a: MOD:00790 +is_a: MOD:00790 ! Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form [Term] id: MOD:01231 @@ -22313,8 +22312,8 @@ property_value: MassMono "187.131242" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:59 -relationship: derives_from MOD:01398 -is_a: MOD:01428 +relationship: derives_from MOD:01398 ! N6-propanoyl-L-lysine +is_a: MOD:01428 ! (13)C isotope tagged reagent [Term] id: MOD:01232 @@ -22332,8 +22331,8 @@ property_value: MassMono "184.121178" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:58 -relationship: derives_from MOD:01398 -is_a: MOD:01426 +relationship: derives_from MOD:01398 ! N6-propanoyl-L-lysine +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01233 @@ -22351,8 +22350,8 @@ property_value: MassMono "173.124358" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:56 -relationship: derives_from MOD:00064 -is_a: MOD:00449 +relationship: derives_from MOD:00064 ! N6-acetyl-L-lysine +is_a: MOD:00449 ! acetate labeling reagent (N-term) (heavy form, +3amu) [Term] id: MOD:01234 @@ -22370,8 +22369,8 @@ property_value: MassMono "89.036275" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:258 -is_a: MOD:00581 -is_a: MOD:00916 +is_a: MOD:00581 ! (18)O monosubstituted residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01235 @@ -22389,8 +22388,8 @@ property_value: MassMono "103.051925" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:258 -is_a: MOD:00581 -is_a: MOD:00917 +is_a: MOD:00581 ! (18)O monosubstituted residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01236 @@ -22408,8 +22407,8 @@ property_value: MassMono "165.067575" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:258 -is_a: MOD:00581 -is_a: MOD:00919 +is_a: MOD:00581 ! (18)O monosubstituted residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01237 @@ -22427,7 +22426,7 @@ property_value: MassMono "259.124215" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:53 -is_a: MOD:00446 +is_a: MOD:00446 ! 4-hydroxynonenal adduct [Term] id: MOD:01238 @@ -22445,7 +22444,7 @@ property_value: MassMono "284.209993" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:53 -is_a: MOD:00446 +is_a: MOD:00446 ! 4-hydroxynonenal adduct [Term] id: MOD:01239 @@ -22463,7 +22462,7 @@ property_value: MassMono "293.173942" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:53 -is_a: MOD:00446 +is_a: MOD:00446 ! 4-hydroxynonenal adduct [Term] id: MOD:01240 @@ -22480,10 +22479,10 @@ property_value: MassMono "511.323065" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:535 -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:01875 -relationship: derives_from MOD:01148 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01875 ! N6-acylated L-lysine +relationship: derives_from MOD:01148 ! ubiquitinylated lysine [Term] id: MOD:01241 @@ -22501,9 +22500,9 @@ property_value: MassMono "132.061423" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:298 -is_a: MOD:00617 -is_a: MOD:00904 -relationship: derives_from MOD:01181 +is_a: MOD:00617 ! 3x(2)H residue methyl ester +is_a: MOD:00904 ! modified L-aspartic acid residue +relationship: derives_from MOD:01181 ! L-aspartic acid 4-methyl ester [Term] id: MOD:01242 @@ -22521,9 +22520,9 @@ property_value: MassMono "146.077073" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:298 -is_a: MOD:00617 -is_a: MOD:00906 -relationship: derives_from MOD:00081 +is_a: MOD:00617 ! 3x(2)H residue methyl ester +is_a: MOD:00906 ! modified L-glutamic acid residue +relationship: derives_from MOD:00081 ! L-glutamic acid 5-methyl ester (Glu) [Term] id: MOD:01243 @@ -22537,7 +22536,7 @@ property_value: DiffMono "37.955882" xsd:float property_value: Origin "X" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:530 -is_a: MOD:01072 +is_a: MOD:01072 ! monopotassium salt [Term] id: MOD:01244 @@ -22553,8 +22552,8 @@ property_value: MassAvg "167.21" xsd:float property_value: MassMono "166.998475" xsd:float property_value: Origin "E" xsd:string xref: Unimod:530 -is_a: MOD:00906 -is_a: MOD:01072 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01072 ! monopotassium salt [Term] id: MOD:01245 @@ -22570,8 +22569,8 @@ property_value: MassAvg "153.18" xsd:float property_value: MassMono "152.982825" xsd:float property_value: Origin "D" xsd:string xref: Unimod:530 -is_a: MOD:00904 -is_a: MOD:01072 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01072 ! monopotassium salt [Term] id: MOD:01246 @@ -22625,8 +22624,8 @@ property_value: MassMono "485.083545" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:292 -is_a: MOD:00611 -is_a: MOD:00919 +is_a: MOD:00611 ! iodouridine monophosphate derivatized residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01249 @@ -22644,8 +22643,8 @@ property_value: MassMono "508.099530" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:292 -is_a: MOD:00611 -is_a: MOD:00918 +is_a: MOD:00611 ! iodouridine monophosphate derivatized residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01250 @@ -22663,8 +22662,8 @@ property_value: MassMono "469.088630" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:292 -is_a: MOD:00611 -is_a: MOD:00914 +is_a: MOD:00611 ! iodouridine monophosphate derivatized residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:01251 @@ -22681,8 +22680,8 @@ property_value: MassMono "273.114712" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:293 -is_a: MOD:00612 -is_a: MOD:01875 +is_a: MOD:00612 ! 3-(carboxamidomethylthio)propanoylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01252 @@ -22717,8 +22716,8 @@ property_value: MassMono "182.105528" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:319 -is_a: MOD:00630 -is_a: MOD:00912 +is_a: MOD:00630 ! C3-H2-O adduct (+54 amu) of malondialdehyde with lysine or methylglyoxal with arginine. +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01254 @@ -22737,9 +22736,9 @@ property_value: MassMono "160.151370" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:199 -is_a: MOD:00552 -is_a: MOD:00912 -relationship: derives_from MOD:00084 +is_a: MOD:00552 ! 4x(2)H labeled dimethylated residue +is_a: MOD:00912 ! modified L-lysine residue +relationship: derives_from MOD:00084 ! N6,N6-dimethyl-L-lysine [Term] id: MOD:01255 @@ -22757,8 +22756,8 @@ property_value: MassMono "163.012556" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:200 -is_a: MOD:00553 -is_a: MOD:00916 +is_a: MOD:00553 ! 1,2-ethanedithiol modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01256 @@ -22776,8 +22775,8 @@ property_value: MassMono "177.028206" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:200 -is_a: MOD:00553 -is_a: MOD:00917 +is_a: MOD:00553 ! 1,2-ethanedithiol modified residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01257 @@ -22794,7 +22793,7 @@ property_value: MassMono "298.142976" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:194 -is_a: MOD:00547 +is_a: MOD:00547 ! 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate [Term] id: MOD:01258 @@ -22811,8 +22810,8 @@ property_value: MassMono "214.041213" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:314 -is_a: MOD:00625 -is_a: MOD:00905 +is_a: MOD:00625 ! N-methylmaleimide derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01259 @@ -22829,8 +22828,8 @@ property_value: MassMono "239.126991" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:314 -is_a: MOD:00625 -is_a: MOD:00912 +is_a: MOD:00625 ! N-methylmaleimide derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01260 @@ -23051,8 +23050,8 @@ property_value: MassMono "353.188546" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:89 -is_a: MOD:00467 -is_a: MOD:01875 +is_a: MOD:00467 ! iminobiotinyl modified residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01273 @@ -23069,8 +23068,8 @@ property_value: MassMono "270.067428" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:276 -is_a: MOD:00596 -is_a: MOD:00916 +is_a: MOD:00596 ! 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01274 @@ -23087,8 +23086,8 @@ property_value: MassMono "320.094311" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:276 -is_a: MOD:00596 -is_a: MOD:00909 +is_a: MOD:00596 ! 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:01275 @@ -23105,8 +23104,8 @@ property_value: MassMono "311.130363" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:276 -is_a: MOD:00596 -is_a: MOD:00912 +is_a: MOD:00596 ! 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01276 @@ -23123,8 +23122,8 @@ property_value: MassMono "346.098728" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:276 -is_a: MOD:00596 -is_a: MOD:00919 +is_a: MOD:00596 ! 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01277 @@ -23141,8 +23140,8 @@ property_value: MassMono "173.051050" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:253 -is_a: MOD:00576 -is_a: MOD:00905 +is_a: MOD:00576 ! crotonylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01278 @@ -23159,8 +23158,8 @@ property_value: MassMono "198.136828" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:253 -is_a: MOD:00576 -is_a: MOD:00912 +is_a: MOD:00576 ! crotonylated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01279 @@ -23177,8 +23176,8 @@ property_value: MassMono "207.100777" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:253 -is_a: MOD:00576 -is_a: MOD:00909 +is_a: MOD:00576 ! crotonylated residue +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:01280 @@ -23195,8 +23194,8 @@ property_value: MassMono "591.221897" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:118 -is_a: MOD:00490 -is_a: MOD:00917 +is_a: MOD:00490 ! EDT-iodo-PEO-biotin +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01281 @@ -23213,8 +23212,8 @@ property_value: MassMono "577.206247" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:118 -is_a: MOD:00490 -is_a: MOD:00916 +is_a: MOD:00490 ! EDT-iodo-PEO-biotin +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01282 @@ -23282,8 +23281,8 @@ property_value: MassMono "120.101228" xsd:float property_value: Origin "L" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:695 -is_a: MOD:00911 -is_a: MOD:01370 +is_a: MOD:00911 ! modified L-leucine residue +is_a: MOD:01370 ! 6x(13)C,1x(15)N labeled residue [Term] id: MOD:01286 @@ -23300,8 +23299,8 @@ property_value: MassMono "120.101228" xsd:float property_value: Origin "I" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:695 -is_a: MOD:00910 -is_a: MOD:01370 +is_a: MOD:00910 ! modified L-isoleucine residue +is_a: MOD:01370 ! 6x(13)C,1x(15)N labeled residue [Term] id: MOD:01287 @@ -23318,8 +23317,8 @@ property_value: MassMono "239.136556" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:364 -is_a: MOD:00789 -is_a: MOD:00912 +is_a: MOD:00789 ! Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01288 @@ -23423,8 +23422,8 @@ property_value: MassMono "117.031189" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:366 -is_a: MOD:00852 -relationship: derives_from MOD:00684 +is_a: MOD:00852 ! 1x(18)O labeled deamidated residue +relationship: derives_from MOD:00684 ! deamidated L-asparagine [Term] id: MOD:01294 @@ -23457,8 +23456,8 @@ property_value: MassMono "137.008887" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:30 -is_a: MOD:00423 -is_a: MOD:00904 +is_a: MOD:00423 ! monosodium salt +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:01296 @@ -23478,8 +23477,8 @@ property_value: MassMono "151.024537" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:30 -is_a: MOD:00423 -is_a: MOD:00906 +is_a: MOD:00423 ! monosodium salt +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01297 @@ -23497,8 +23496,8 @@ property_value: MassMono "102.069538" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:772 -is_a: MOD:00915 -is_a: MOD:01832 +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01832 ! 5x(13)C-labeled residue [Term] id: MOD:01298 @@ -23516,9 +23515,9 @@ property_value: MassMono "261.139865" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:335 -is_a: MOD:00642 -is_a: MOD:00905 -relationship: derives_from MOD:01237 +is_a: MOD:00642 ! reduced 4-hydroxynonenal adduct +is_a: MOD:00905 ! modified L-cysteine residue +relationship: derives_from MOD:01237 ! cysteine 4-hydroxynonenal adduct [Term] id: MOD:01299 @@ -23536,9 +23535,9 @@ property_value: MassMono "286.225643" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:335 -is_a: MOD:00642 -is_a: MOD:00912 -relationship: derives_from MOD:01238 +is_a: MOD:00642 ! reduced 4-hydroxynonenal adduct +is_a: MOD:00912 ! modified L-lysine residue +relationship: derives_from MOD:01238 ! lysine 4-hydroxynonenal adduct [Term] id: MOD:01300 @@ -23556,9 +23555,9 @@ property_value: MassMono "295.189592" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:335 -is_a: MOD:00642 -is_a: MOD:00909 -relationship: derives_from MOD:01239 +is_a: MOD:00642 ! reduced 4-hydroxynonenal adduct +is_a: MOD:00909 ! modified L-histidine residue +relationship: derives_from MOD:01239 ! histidine 4-hydroxynonenal adduct [Term] id: MOD:01301 @@ -23576,8 +23575,8 @@ property_value: MassMono "114.079313" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:337 -is_a: MOD:00643 -is_a: MOD:00917 +is_a: MOD:00643 ! methylamine Michael addition derivatized residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01302 @@ -23595,8 +23594,8 @@ property_value: MassMono "100.063663" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:337 -is_a: MOD:00643 -is_a: MOD:00916 +is_a: MOD:00643 ! methylamine Michael addition derivatized residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01303 @@ -23614,8 +23613,8 @@ property_value: MassMono "275.111735" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:454 -is_a: MOD:00160 -is_a: MOD:00876 +is_a: MOD:00160 ! N4-glycosyl-L-asparagine +is_a: MOD:00876 ! hexosaminylated residue [Term] id: MOD:01304 @@ -23632,8 +23631,8 @@ property_value: MassMono "289.163771" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:454 -is_a: MOD:00876 -is_a: MOD:00912 +is_a: MOD:00876 ! hexosaminylated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01305 @@ -23651,8 +23650,8 @@ property_value: MassMono "347.148121" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:454 -is_a: MOD:00876 -is_a: MOD:00918 +is_a: MOD:00876 ! hexosaminylated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01306 @@ -23670,8 +23669,8 @@ property_value: MassMono "262.116486" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:454 -is_a: MOD:00005 -is_a: MOD:00876 +is_a: MOD:00005 ! O-glycosyl-L-threonine +is_a: MOD:00876 ! hexosaminylated residue [Term] id: MOD:01307 @@ -23688,8 +23687,8 @@ property_value: MassMono "612.174923" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:332 -is_a: MOD:00639 -is_a: MOD:00916 +is_a: MOD:00639 ! thiophosphate labeled with biotin-HPDP +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01308 @@ -23706,8 +23705,8 @@ property_value: MassMono "626.190573" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:332 -is_a: MOD:00639 -is_a: MOD:00917 +is_a: MOD:00639 ! thiophosphate labeled with biotin-HPDP +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01309 @@ -23724,8 +23723,8 @@ property_value: MassMono "688.206223" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:332 -is_a: MOD:00639 -is_a: MOD:00919 +is_a: MOD:00639 ! thiophosphate labeled with biotin-HPDP +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01310 @@ -23742,8 +23741,8 @@ property_value: MassMono "187.168462" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:60 -is_a: MOD:00912 -is_a: MOD:01426 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01311 @@ -23760,8 +23759,8 @@ property_value: MassMono "190.187293" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:61 -is_a: MOD:00912 -is_a: MOD:01426 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01312 @@ -23779,8 +23778,8 @@ property_value: MassMono "193.206123" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:62 -is_a: MOD:00912 -is_a: MOD:01426 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01313 @@ -23797,8 +23796,8 @@ property_value: MassMono "196.224953" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:63 -is_a: MOD:00912 -is_a: MOD:01426 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01314 @@ -23815,9 +23814,9 @@ property_value: MassMono "228.111007" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:64 -relationship: derives_from MOD:01819 -is_a: MOD:00670 -is_a: MOD:01426 +relationship: derives_from MOD:01819 ! N6-succinyl-L-lysine +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01315 @@ -23834,9 +23833,9 @@ property_value: MassMono "232.136114" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:65 -relationship: derives_from MOD:01819 -is_a: MOD:00670 -is_a: MOD:01426 +relationship: derives_from MOD:01819 ! N6-succinyl-L-lysine +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01316 @@ -23853,9 +23852,9 @@ property_value: MassMono "232.124426" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:66 -relationship: derives_from MOD:01819 -is_a: MOD:00670 -is_a: MOD:01428 +relationship: derives_from MOD:01819 ! N6-succinyl-L-lysine +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:01428 ! (13)C isotope tagged reagent [Term] id: MOD:01317 @@ -23872,8 +23871,8 @@ property_value: MassMono "188.098334" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:178 -is_a: MOD:00535 -is_a: MOD:00917 +is_a: MOD:00535 ! phosphorylation to amine thiol +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01318 @@ -23890,8 +23889,8 @@ property_value: MassMono "174.082684" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:178 -is_a: MOD:00535 -is_a: MOD:00916 +is_a: MOD:00535 ! phosphorylation to amine thiol +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01319 @@ -23909,8 +23908,8 @@ property_value: MassMono "355.225977" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:176 -is_a: MOD:00534 -is_a: MOD:00909 +is_a: MOD:00534 ! Michael addition of BHT quinone methide to cysteine and lysine +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:01320 @@ -23928,8 +23927,8 @@ property_value: MassMono "346.262028" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:176 -is_a: MOD:00534 -is_a: MOD:00912 +is_a: MOD:00534 ! Michael addition of BHT quinone methide to cysteine and lysine +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01321 @@ -23947,8 +23946,8 @@ property_value: MassMono "321.176250" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:176 -is_a: MOD:00534 -is_a: MOD:00905 +is_a: MOD:00534 ! Michael addition of BHT quinone methide to cysteine and lysine +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01322 @@ -24033,8 +24032,8 @@ property_value: MassMono "172.093522" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:184 -is_a: MOD:00540 -is_a: MOD:00919 +is_a: MOD:00540 ! 9x(13)C labeled residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01327 @@ -24051,8 +24050,8 @@ property_value: MassMono "156.098607" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:184 -is_a: MOD:00540 -is_a: MOD:00914 +is_a: MOD:00540 ! 9x(13)C labeled residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:01328 @@ -24070,8 +24069,8 @@ property_value: MassMono "244.084792" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:6 -is_a: MOD:00399 -is_a: MOD:00918 +is_a: MOD:00399 ! iodoacetic acid derivatized residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01329 @@ -24122,7 +24121,7 @@ property_value: MassMono "162.121240" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:188 -is_a: MOD:00544 +is_a: MOD:00544 ! 6x(13)C labeled residue [Term] id: MOD:01332 @@ -24140,7 +24139,7 @@ property_value: MassMono "119.104193" xsd:float property_value: Origin "L" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:188 -is_a: MOD:00544 +is_a: MOD:00544 ! 6x(13)C labeled residue [Term] id: MOD:01333 @@ -24158,7 +24157,7 @@ property_value: MassMono "119.104193" xsd:float property_value: Origin "I" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:188 -is_a: MOD:00544 +is_a: MOD:00544 ! 6x(13)C labeled residue [Term] id: MOD:01334 @@ -24177,7 +24176,7 @@ property_value: MassMono "134.115092" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:188 -is_a: MOD:00544 +is_a: MOD:00544 ! 6x(13)C labeled residue [Term] id: MOD:01335 @@ -24194,8 +24193,8 @@ property_value: MassMono "349.086177" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:464 -is_a: MOD:00880 -is_a: MOD:00912 +is_a: MOD:00880 ! 6x(13)C labeled 4-sulfophenyl isothiocyanate derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01336 @@ -24229,8 +24228,8 @@ property_value: MassMono "129.042593" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:528 -relationship: derives_from MOD:01181 -is_a: MOD:01369 +relationship: derives_from MOD:01181 ! L-aspartic acid 4-methyl ester +is_a: MOD:01369 ! deamidated and methyl esterified residue [Term] id: MOD:01338 @@ -24248,8 +24247,8 @@ property_value: MassMono "156.126263" xsd:float property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:280 -is_a: MOD:00912 -is_a: MOD:01339 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01339 ! ethylated residue [Term] id: MOD:01339 @@ -24265,7 +24264,7 @@ property_value: DiffMono "28.031300" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:280 -is_a: MOD:00001 +is_a: MOD:00001 ! alkylated residue [Term] id: MOD:01340 @@ -24282,8 +24281,8 @@ property_value: MassMono "476.335378" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:91 -is_a: MOD:00469 -is_a: MOD:00912 +is_a: MOD:00469 ! ESP-Tag heavy d10 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01341 @@ -24300,8 +24299,8 @@ property_value: MassMono "466.272610" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:90 -is_a: MOD:00468 -is_a: MOD:00912 +is_a: MOD:00468 ! ESP-Tag light d0 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01342 @@ -24373,8 +24372,8 @@ property_value: MassMono "99.032028" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:401 -is_a: MOD:00917 -is_a: MOD:01888 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01888 ! didehydrogenated residue [Term] id: MOD:01346 @@ -24391,8 +24390,8 @@ property_value: MassMono "276.095751" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 -is_a: MOD:00160 -is_a: MOD:00434 +is_a: MOD:00160 ! N4-glycosyl-L-asparagine +is_a: MOD:00434 ! hexosylated residue [Term] id: MOD:01347 @@ -24409,8 +24408,8 @@ property_value: MassMono "290.147786" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 -is_a: MOD:00767 -is_a: MOD:00912 +is_a: MOD:00767 ! glycated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01348 @@ -24427,8 +24426,8 @@ property_value: MassMono "263.100502" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 -is_a: MOD:00005 -is_a: MOD:00434 +is_a: MOD:00005 ! O-glycosyl-L-threonine +is_a: MOD:00434 ! hexosylated residue [Term] id: MOD:01349 @@ -24446,8 +24445,8 @@ property_value: MassMono "246.067428" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:320 -is_a: MOD:00631 -is_a: MOD:00905 +is_a: MOD:00631 ! hydrolyzed N-ethylmaleimide adduct +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01350 @@ -24465,7 +24464,7 @@ property_value: MassMono "271.153206" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:320 -is_a: MOD:00631 +is_a: MOD:00631 ! hydrolyzed N-ethylmaleimide adduct [Term] id: MOD:01351 @@ -24484,8 +24483,8 @@ property_value: MassMono "231.064391" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:354 -is_a: MOD:00461 -is_a: MOD:00918 +is_a: MOD:00461 ! nitrated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01352 @@ -24506,8 +24505,8 @@ property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:354 xref: uniprot.ptm:PTM-0213 -is_a: MOD:00461 -is_a: MOD:00919 +is_a: MOD:00461 ! nitrated residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01353 @@ -24524,8 +24523,8 @@ property_value: MassMono "169.121512" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:141 -is_a: MOD:00509 -is_a: MOD:00912 +is_a: MOD:00509 ! amidination of lysines or N-terminal amines with methyl acetimidate +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01354 @@ -24542,8 +24541,8 @@ property_value: MassMono "771.278365" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:149 -is_a: MOD:00517 -is_a: MOD:00160 +is_a: MOD:00517 ! Hex1HexNAc1NeuAc1 glycosylated residue +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:01355 @@ -24560,8 +24559,8 @@ property_value: MassMono "758.283116" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:149 -is_a: MOD:00517 -is_a: MOD:00005 +is_a: MOD:00517 ! Hex1HexNAc1NeuAc1 glycosylated residue +is_a: MOD:00005 ! O-glycosyl-L-threonine [Term] id: MOD:01356 @@ -24578,8 +24577,8 @@ property_value: MassMono "744.267466" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:149 -is_a: MOD:00517 -is_a: MOD:00916 +is_a: MOD:00517 ! Hex1HexNAc1NeuAc1 glycosylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01357 @@ -24596,9 +24595,9 @@ property_value: MassMono "162.158080" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:510 -is_a: MOD:00912 -is_a: MOD:00927 -relationship: derives_from MOD:00084 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:00927 ! 2x(13)C,4x(2)H labeled dimethylated residue +relationship: derives_from MOD:00084 ! N6,N6-dimethyl-L-lysine [Term] id: MOD:01358 @@ -24613,7 +24612,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:687 -is_a: MOD:01426 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01359 @@ -24630,8 +24629,8 @@ property_value: MassMono "237.141534" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:687 -is_a: MOD:00912 -is_a: MOD:01426 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01360 @@ -24649,8 +24648,8 @@ property_value: MassMono "343.066048" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:261 -is_a: MOD:00584 -is_a: MOD:00912 +is_a: MOD:00584 ! 4-sulfophenyl isothiocyanate derivatized residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01361 @@ -24667,8 +24666,8 @@ property_value: MassMono "196.991165" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:260 -is_a: MOD:00583 -is_a: MOD:00917 +is_a: MOD:00583 ! thiophosphorylated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01362 @@ -24685,8 +24684,8 @@ property_value: MassMono "182.975515" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:260 -is_a: MOD:00583 -is_a: MOD:00916 +is_a: MOD:00583 ! thiophosphorylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01363 @@ -24703,8 +24702,8 @@ property_value: MassMono "259.006815" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:260 -is_a: MOD:00583 -is_a: MOD:00919 +is_a: MOD:00583 ! thiophosphorylated residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01364 @@ -24721,8 +24720,8 @@ property_value: MassMono "508.105270" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:478 -is_a: MOD:00626 -is_a: MOD:00916 +is_a: MOD:00626 ! fluorescein-5-thiosemicarbazide modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01365 @@ -24739,8 +24738,8 @@ property_value: MassMono "524.082426" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:478 -is_a: MOD:00626 -is_a: MOD:00905 +is_a: MOD:00626 ! fluorescein-5-thiosemicarbazide modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01366 @@ -24757,8 +24756,8 @@ property_value: MassMono "549.168205" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:478 -is_a: MOD:00626 -is_a: MOD:00912 +is_a: MOD:00626 ! fluorescein-5-thiosemicarbazide modified residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01367 @@ -24775,8 +24774,8 @@ property_value: MassMono "518.126005" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:478 -is_a: MOD:00626 -is_a: MOD:00915 +is_a: MOD:00626 ! fluorescein-5-thiosemicarbazide modified residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:01368 @@ -24793,8 +24792,8 @@ property_value: MassMono "577.174353" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:478 -is_a: MOD:00626 -is_a: MOD:00902 +is_a: MOD:00626 ! fluorescein-5-thiosemicarbazide modified residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:01369 @@ -24808,8 +24807,8 @@ property_value: DiffFormula "C 1 H 1 N -1 O 1" xsd:string property_value: DiffMono "14.999666" xsd:float property_value: Origin "X" xsd:string xref: Unimod:528 -is_a: MOD:00393 -relationship: contains MOD:00400 +is_a: MOD:00393 ! O-methylated residue +relationship: contains MOD:00400 ! deamidated residue [Term] id: MOD:01370 @@ -24823,8 +24822,8 @@ property_value: DiffMono "7.017164" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:695 -is_a: MOD:00842 -is_a: MOD:00843 +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00843 ! (15)N labeled residue [Term] id: MOD:01371 @@ -24857,7 +24856,7 @@ property_value: MassMono "129.078979" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0665 -is_a: MOD:01411 +is_a: MOD:01411 ! monohydroxylated leucine [Term] id: MOD:01373 @@ -24877,7 +24876,7 @@ property_value: MassMono "129.078979" xsd:float property_value: Origin "L" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0491 -is_a: MOD:01411 +is_a: MOD:01411 ! monohydroxylated leucine [Term] id: MOD:01374 @@ -24895,8 +24894,8 @@ property_value: MassMono "127.063329" xsd:float property_value: Origin "L" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0492 -is_a: MOD:00679 -is_a: MOD:00911 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00911 ! modified L-leucine residue [Term] id: MOD:01375 @@ -24916,7 +24915,7 @@ property_value: MassMono "145.073893" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0340 -is_a: MOD:01412 +is_a: MOD:01412 ! dihydroxylated leucine [Term] id: MOD:01376 @@ -24936,7 +24935,7 @@ property_value: MassMono "145.073893" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0343 -is_a: MOD:01416 +is_a: MOD:01416 ! dihydroxylated isoleucine [Term] id: MOD:01377 @@ -24957,7 +24956,7 @@ property_value: MassMono "129.078979" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0337 -is_a: MOD:01415 +is_a: MOD:01415 ! monohydroxylated isoleucine [Term] id: MOD:01378 @@ -24977,7 +24976,7 @@ property_value: MassMono "145.073893" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0336 -is_a: MOD:01416 +is_a: MOD:01416 ! dihydroxylated isoleucine [Term] id: MOD:01379 @@ -24995,7 +24994,7 @@ property_value: MassMono "264.056863" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0304 -is_a: MOD:00918 +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01380 @@ -25015,8 +25014,8 @@ property_value: MassMono "319.062677" xsd:float property_value: Origin "C, W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0338 -is_a: MOD:00687 -is_a: MOD:02057 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:02057 ! crosslinked L-tryptophan residue [Term] id: MOD:01381 @@ -25038,8 +25037,8 @@ property_value: MassMono "323.246044" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0493 -is_a: MOD:02003 -is_a: MOD:01768 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01768 ! O-palmitoleylated residue [Term] id: MOD:01382 @@ -25065,8 +25064,8 @@ property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0503 -is_a: MOD:01463 -is_a: MOD:01698 +is_a: MOD:01463 ! N-methylated methionine +is_a: MOD:01698 ! alpha-amino trimethylated protonated-residue [Term] id: MOD:01383 @@ -25088,8 +25087,8 @@ property_value: MassMono "219.997634" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0324 -is_a: MOD:02044 -is_a: MOD:00689 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:00689 ! disulfide crosslinked residues [Term] id: MOD:01384 @@ -25109,7 +25108,7 @@ property_value: MassMono "101.011293" xsd:float property_value: Origin "S" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0321 -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01385 @@ -25125,6 +25124,9 @@ synonym: "beta-phenylserine" EXACT RESID-alternate [] synonym: "hydroxylationf" EXACT OMSSA-label [] synonym: "L-threo-3-phenylserine" EXACT RESID-alternate [] synonym: "MOD_RES 3-hydroxyphenylalanine" EXACT UniProt-feature [] +synonym: "L-m-Tyrosine" EXACT PSI-MOD-label [] +synonym: "(S)-2-amino-3-(3-hydroxyphenyl)propanoic acid" EXACT PSI-MOD-label [] +synonym: "Meta-Tyrosine" EXACT PSI-MOD-label [] property_value: DiffAvg "16.00" xsd:float property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string property_value: DiffMono "15.994915" xsd:float @@ -25134,8 +25136,9 @@ property_value: MassMono "163.063329" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0346 -is_a: MOD:00677 -is_a: MOD:00914 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00914 ! modified L-phenylalanine residue +is_a: MOD:02116 ! monohydroxylated phenylalanine [Term] id: MOD:01386 @@ -25155,8 +25158,8 @@ property_value: MassMono "115.063329" xsd:float property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0347 -is_a: MOD:00677 -is_a: MOD:00920 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00920 ! modified L-valine residue [Term] id: MOD:01387 @@ -25177,7 +25180,7 @@ property_value: MassMono "115.063329" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0356 -is_a: MOD:01803 +is_a: MOD:01803 ! O-methylated threonine [Term] id: MOD:01388 @@ -25207,8 +25210,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0354 -is_a: MOD:00917 -is_a: MOD:00960 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:00960 ! decarboxylated residue [Term] id: MOD:01389 @@ -25228,9 +25231,9 @@ property_value: MassMono "196.067034" xsd:float property_value: Origin "C, I" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0361 -is_a: MOD:02049 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02049 ! crosslinked L-isoleucine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01390 @@ -25250,9 +25253,9 @@ property_value: MassMono "182.051384" xsd:float property_value: Origin "C, V" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0365 -is_a: MOD:02059 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02059 ! crosslinked L-valine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01391 @@ -25272,8 +25275,8 @@ property_value: MassMono "226.077599" xsd:float property_value: Origin "C, V" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0373 -is_a: MOD:02059 -is_a: MOD:01420 +is_a: MOD:02059 ! crosslinked L-valine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues [Term] id: MOD:01392 @@ -25293,9 +25296,9 @@ property_value: MassMono "211.041548" xsd:float property_value: Origin "C, N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0352 -is_a: MOD:02042 -is_a: MOD:01420 -relationship: derives_from MOD:00656 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +relationship: derives_from MOD:00656 ! C-methylated residue [Term] id: MOD:01393 @@ -25313,9 +25316,9 @@ property_value: MassMono "207.022823" xsd:float property_value: Origin "C, S, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0358 -is_a: MOD:02044 -is_a: MOD:02055 -is_a: MOD:01425 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01425 ! pyridinyl ring crosslinked residues [Term] id: MOD:01394 @@ -25336,9 +25339,9 @@ property_value: Origin "C, S, S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0348 -is_a: MOD:02044 -is_a: MOD:02055 -is_a: MOD:01425 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01425 ! pyridinyl ring crosslinked residues [Term] id: MOD:01395 @@ -25357,9 +25360,9 @@ property_value: MassMono "430.197811" xsd:float property_value: Origin "I, T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:02049 -is_a: MOD:02056 -is_a: MOD:01424 +is_a: MOD:02049 ! crosslinked L-isoleucine residue +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01424 ! quinaldate modified residue [Term] id: MOD:01396 @@ -25380,9 +25383,9 @@ property_value: MassAvg "127.14" xsd:float property_value: MassMono "127.063329" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifactual" xsd:string -is_a: MOD:00915 -relationship: has_functional_parent MOD:01024 -relationship: has_functional_parent MOD:01417 +is_a: MOD:00915 ! modified L-proline residue +relationship: has_functional_parent MOD:01024 ! monohydroxylated proline +relationship: has_functional_parent MOD:01417 ! monomethylated proline [Term] id: MOD:01397 @@ -25402,9 +25405,9 @@ property_value: MassMono "168.053492" xsd:float property_value: Origin "S, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0386 -is_a: MOD:02055 -is_a: MOD:01422 -is_a: MOD:02082 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01422 ! oxazole/oxazoline ring crosslinked residues (Thr) +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01398 @@ -25431,9 +25434,9 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:58 xref: uniprot.ptm:PTM-0642 -is_a: MOD:01155 -is_a: MOD:01875 -is_a: MOD:01894 +is_a: MOD:01155 ! lipoconjugated residue +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:01894 ! propanoylated residue [Term] id: MOD:01399 @@ -25456,8 +25459,8 @@ property_value: MassMono "669.156072" xsd:float property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0355 -is_a: MOD:00752 -is_a: MOD:00912 +is_a: MOD:00752 ! adenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01400 @@ -25469,8 +25472,8 @@ synonym: "poly[2'-adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with 1alph property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:02087 -is_a: MOD:00912 +is_a: MOD:02087 ! adenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01401 @@ -25492,7 +25495,7 @@ property_value: MassMono "130.037842" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0370 -is_a: MOD:01688 +is_a: MOD:01688 ! 3-hydroxy-L-asparagine [Term] id: MOD:01402 @@ -25512,7 +25515,7 @@ property_value: MassMono "129.042593" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0368 -is_a: MOD:00866 +is_a: MOD:00866 ! dihydroxylated proline [Term] id: MOD:01403 @@ -25532,7 +25535,7 @@ property_value: MassMono "161.068808" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0372 -is_a: MOD:01413 +is_a: MOD:01413 ! trihydroxylated leucine [Term] id: MOD:01404 @@ -25552,9 +25555,9 @@ property_value: MassMono "197.025897" xsd:float property_value: Origin "C, N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0359 -is_a: MOD:02042 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01405 @@ -25572,9 +25575,9 @@ property_value: MassAvg "180.22" xsd:float property_value: MassMono "180.035734" xsd:float property_value: Origin "C, P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02054 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02054 ! crosslinked L-proline residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01406 @@ -25594,9 +25597,9 @@ property_value: MassMono "184.030649" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0364 -is_a: MOD:02056 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01407 @@ -25616,9 +25619,9 @@ property_value: MassMono "232.067034" xsd:float property_value: Origin "C, F" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0366 -is_a: MOD:02053 -is_a: MOD:01420 -is_a: MOD:00954 +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01408 @@ -25638,9 +25641,9 @@ property_value: MassMono "186.046299" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0392 -is_a: MOD:02056 -is_a: MOD:01420 -is_a: MOD:00954 +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01409 @@ -25651,7 +25654,7 @@ property_value: DiffAvg "48.00" xsd:float property_value: DiffFormula "C 0 H 0 N 0 O 3" xsd:string property_value: DiffMono "47.984744" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00677 +is_a: MOD:00677 ! hydroxylated residue [Term] id: MOD:01410 @@ -25659,8 +25662,8 @@ name: hydroxylated leucine def: "A protein modification that effectively converts an L-leucine residue to an hydroxylated leucine." [PubMed:18688235] synonym: "HyLeu" EXACT PSI-MOD-label [] property_value: Origin "L" xsd:string -is_a: MOD:00677 -is_a: MOD:00911 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00911 ! modified L-leucine residue [Term] id: MOD:01411 @@ -25675,8 +25678,8 @@ property_value: MassAvg "129.16" xsd:float property_value: MassMono "129.078979" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00425 -is_a: MOD:01410 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:01410 ! hydroxylated leucine [Term] id: MOD:01412 @@ -25691,8 +25694,8 @@ property_value: MassAvg "145.16" xsd:float property_value: MassMono "145.073893" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00428 -is_a: MOD:01410 +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:01410 ! hydroxylated leucine [Term] id: MOD:01413 @@ -25707,8 +25710,8 @@ property_value: MassAvg "161.16" xsd:float property_value: MassMono "161.068808" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01409 -is_a: MOD:01410 +is_a: MOD:01409 ! trihydroxylated residue +is_a: MOD:01410 ! hydroxylated leucine [Term] id: MOD:01414 @@ -25716,8 +25719,8 @@ name: hydroxylated isoleucine def: "A protein modification that effectively converts an L-isoleucine residue to an hydroxylated isoleucine." [PubMed:18688235] synonym: "HyIle" EXACT PSI-MOD-label [] property_value: Origin "I" xsd:string -is_a: MOD:00677 -is_a: MOD:00910 +is_a: MOD:00677 ! hydroxylated residue +is_a: MOD:00910 ! modified L-isoleucine residue [Term] id: MOD:01415 @@ -25732,8 +25735,8 @@ property_value: MassAvg "129.16" xsd:float property_value: MassMono "129.078979" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00425 -is_a: MOD:01414 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:01414 ! hydroxylated isoleucine [Term] id: MOD:01416 @@ -25748,8 +25751,8 @@ property_value: MassAvg "145.16" xsd:float property_value: MassMono "145.073893" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00428 -is_a: MOD:01414 +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:01414 ! hydroxylated isoleucine [Term] id: MOD:01417 @@ -25765,8 +25768,8 @@ property_value: MassAvg "112.15" xsd:float property_value: MassMono "112.076239" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00599 -is_a: MOD:00712 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00712 ! methylated proline [Term] id: MOD:01418 @@ -25775,14 +25778,14 @@ def: "A protein modification that effectively converts an L-threonine residue to synonym: "MeThr" EXACT PSI-MOD-label [] property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00427 -is_a: MOD:00917 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01419 name: oxazole/oxazoline ring crosslinked residues def: "A protein modification that crosslinks two residues by condensation of a serine or threonine hydroxyl with the carbonyl of the preceding residue to form an oxazole or oxazoline ring, or by rearrangement and condensation of a cysteine with the carbonyl of the preceding residue to form a 1,3-oxazole-4-carbothionic acid." [PubMed:18688235] -is_a: MOD:00690 +is_a: MOD:00690 ! oxazole/thiazole ring crosslinked residues [Term] id: MOD:01420 @@ -25790,8 +25793,8 @@ name: thiazole/thiazoline ring crosslinked residues def: "A protein modification that crosslinks two residues by condensation of a cysteine thiol with the carbonyl of the preceding residue to form a thiazole or thiazoline ring." [PubMed:18688235] property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00687 -is_a: MOD:00690 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:00690 ! oxazole/thiazole ring crosslinked residues [Term] id: MOD:01421 @@ -25799,8 +25802,8 @@ name: oxazole/oxazoline ring crosslinked residues (Ser) def: "A protein modification that crosslinks two residues by condensation of a serine hydroxyl with the carbonyl of the preceding residue to form an oxazole or oxazoline ring." [PubMed:18688235] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02055 -is_a: MOD:01419 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01419 ! oxazole/oxazoline ring crosslinked residues [Term] id: MOD:01422 @@ -25808,8 +25811,8 @@ name: oxazole/oxazoline ring crosslinked residues (Thr) def: "A protein modification that crosslinks two residues by condensation of a threonine hydroxyl with the carbonyl of the preceding residue to form a 5-methyloxazole or 5-methyloxazoline ring." [PubMed:18688235] property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02056 -is_a: MOD:01419 +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01419 ! oxazole/oxazoline ring crosslinked residues [Term] id: MOD:01423 @@ -25822,14 +25825,14 @@ property_value: DiffMono "236.214016" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:431 -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:01424 name: quinaldate modified residue def: "A protein modification that effectively results from forming an adduct with a compound containing a quinaldate, kynurenate, or xanthurenate group." [PubMed:18688235] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01425 @@ -25838,14 +25841,14 @@ def: "A protein modification that crosslinks three residues by formation of a py comment: Cross-link 3. property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:01426 name: isotope tagged reagent derivatized residue def: "A protein modification that forms an adduct with a particular isotope labeled compound used as a reagent." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01427 @@ -25865,32 +25868,32 @@ id: MOD:01428 name: (13)C isotope tagged reagent def: "A protein modification that forms an adduct with a (13)C labeled compound used as a reagent." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01426 -is_a: MOD:00842 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:00842 ! (13)C labeled residue [Term] id: MOD:01429 name: (15)N isotope tagged reagent def: "A protein modification that forms an adduct with a (15)N labeled compound used as a reagent." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01426 -is_a: MOD:00843 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:00843 ! (15)N labeled residue [Term] id: MOD:01430 name: (18)O isotope tagged reagent def: "A protein modification that forms an adduct with a (13)C labeled compound used as a reagent." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01426 -is_a: MOD:00844 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:00844 ! (18)O labeled residue [Term] id: MOD:01431 name: (2)H deuterium tagged reagent def: "A protein modification that forms an adduct with a (2)H labeled compound used as a reagent." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01426 -is_a: MOD:00839 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:00839 ! (2)H deuterium labeled residue [Term] id: MOD:01432 @@ -25910,7 +25913,7 @@ property_value: MassMono "145.073893" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0666 -is_a: MOD:01412 +is_a: MOD:01412 ! dihydroxylated leucine [Term] id: MOD:01433 @@ -25931,8 +25934,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0379 -is_a: MOD:00683 -is_a: MOD:00917 +is_a: MOD:00683 ! dehydrogenated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01434 @@ -25952,8 +25955,8 @@ property_value: MassMono "145.037508" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0453 -is_a: MOD:00425 -is_a: MOD:00906 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01435 @@ -25972,9 +25975,9 @@ property_value: MassAvg "401.44" xsd:float property_value: MassMono "401.104542" xsd:float property_value: Origin "C, E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00672 -is_a: MOD:02044 -is_a: MOD:02045 +is_a: MOD:00672 ! S-acylated residue +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02045 ! crosslinked L-glutamic acid residue [Term] id: MOD:01436 @@ -25993,7 +25996,7 @@ property_value: MassMono "286.086152" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:01629 +is_a: MOD:01629 ! cyclo[(prolylserin)-O-yl] cysteinate [Term] id: MOD:01437 @@ -26014,10 +26017,10 @@ property_value: Origin "C, P, S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0380 -is_a: MOD:02054 -is_a: MOD:02055 -is_a: MOD:01629 -is_a: MOD:00954 +is_a: MOD:02054 ! crosslinked L-proline residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01629 ! cyclo[(prolylserin)-O-yl] cysteinate +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01438 @@ -26038,7 +26041,7 @@ property_value: MassAvg "208.28" xsd:float property_value: MassMono "208.067034" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00424 +is_a: MOD:00424 ! S-pyridylethyl-L-cysteine [Term] id: MOD:01439 @@ -26051,7 +26054,7 @@ synonym: "S-(pyridin-4-ylethyl)-L-cysteine" EXACT PSI-MOD-alternate [] synonym: "S-pyridylethylation" RELATED Unimod-description [] property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00424 +is_a: MOD:00424 ! S-pyridylethyl-L-cysteine [Term] id: MOD:01440 @@ -26064,8 +26067,8 @@ property_value: MassAvg "113.12" xsd:float property_value: MassMono "113.047678" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00859 -is_a: MOD:00594 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:00594 ! residues isobaric at 113.047678 Da [Term] id: MOD:01441 @@ -26074,7 +26077,7 @@ def: "A protein modification that inserts or replaces a residue with a natural, subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00009 +is_a: MOD:00009 ! natural residue [Term] id: MOD:01442 @@ -26093,9 +26096,9 @@ property_value: MassMono "260.116092" xsd:float property_value: Origin "V, Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0390 -is_a: MOD:00692 -is_a: MOD:02058 -is_a: MOD:02059 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02058 ! crosslinked L-tyrosine residue +is_a: MOD:02059 ! crosslinked L-valine residue [Term] id: MOD:01443 @@ -26111,11 +26114,11 @@ property_value: MassAvg "1140.86" xsd:float property_value: MassMono "1140.326447" xsd:float property_value: Origin "E, E, E, E, H, H" xsd:string property_value: Source "natural" xsd:string -relationship: contains MOD:00438 -is_a: MOD:00738 -is_a: MOD:00740 -is_a: MOD:02068 -is_a: MOD:02070 +relationship: contains MOD:00438 ! myristoylated residue +is_a: MOD:00738 ! iron containing modified residue +is_a: MOD:00740 ! manganese containing modified residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:01444 @@ -26136,8 +26139,8 @@ property_value: MassAvg "103.08" xsd:float property_value: MassMono "103.026943" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00905 -is_a: MOD:01448 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01448 ! L-3,3-dihydroxyoalanine [Term] id: MOD:01445 @@ -26158,8 +26161,8 @@ property_value: MassAvg "103.08" xsd:float property_value: MassMono "103.026943" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00916 -is_a: MOD:01448 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01448 ! L-3,3-dihydroxyoalanine [Term] id: MOD:01446 @@ -26178,8 +26181,8 @@ property_value: MassMono "178.053789" xsd:float property_value: Origin "MOD:00030" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01450 -relationship: derives_from MOD:00030 +is_a: MOD:01450 ! modified N-formyl-L-methionine residue +relationship: derives_from MOD:00030 ! N-formyl-L-methionine residue [Term] id: MOD:01447 @@ -26199,7 +26202,7 @@ property_value: MassMono "178.053789" xsd:float property_value: Origin "M" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00913 +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:01448 @@ -26217,7 +26220,7 @@ property_value: MassAvg "103.08" xsd:float property_value: MassMono "103.026943" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01449 @@ -26231,8 +26234,8 @@ property_value: MassAvg "103.08" xsd:float property_value: MassMono "103.026943" xsd:float property_value: Origin "MOD:01169" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01448 -relationship: derives_from MOD:01169 +is_a: MOD:01448 ! L-3,3-dihydroxyoalanine +relationship: derives_from MOD:01169 ! L-3-oxoalanine [Term] id: MOD:01450 @@ -26240,8 +26243,8 @@ name: modified N-formyl-L-methionine residue def: "A protein modification that modifies an N-formyl-L-methionine residue." [PubMed:18688235] property_value: Origin "MOD:00030" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01157 -relationship: derives_from MOD:00030 +is_a: MOD:01157 ! protein modification categorized by amino acid modified +relationship: derives_from MOD:00030 ! N-formyl-L-methionine residue [Term] id: MOD:01451 @@ -26257,9 +26260,9 @@ property_value: MassAvg "167.06" xsd:float property_value: MassMono "166.998359" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00916 -is_a: MOD:00431 -relationship: derives_from MOD:00159 +is_a: MOD:00916 ! modified L-serine +is_a: MOD:00431 ! modified residue with a secondary neutral loss +relationship: derives_from MOD:00159 ! O-phosphopantetheine-L-serine [Term] id: MOD:01452 @@ -26275,9 +26278,9 @@ property_value: MassAvg "167.06" xsd:float property_value: MassMono "166.998359" xsd:float property_value: Origin "MOD:00159" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00916 -is_a: MOD:00431 -relationship: derives_from MOD:00159 +is_a: MOD:00916 ! modified L-serine +is_a: MOD:00431 ! modified residue with a secondary neutral loss +relationship: derives_from MOD:00159 ! O-phosphopantetheine-L-serine [Term] id: MOD:01453 @@ -26300,10 +26303,10 @@ property_value: MassAvg "143.14" xsd:float property_value: MassMono "143.058243" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00393 -is_a: MOD:00599 -is_a: MOD:00713 -is_a: MOD:00859 +is_a: MOD:00393 ! O-methylated residue +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00713 ! methylated glutamic acid +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01454 @@ -26317,8 +26320,8 @@ property_value: FormalCharge "1+" xsd:string property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00750 -is_a: MOD:00915 +is_a: MOD:00750 ! deoxyribonucleic acid linked residue +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:01455 @@ -26330,7 +26333,7 @@ property_value: DiffAvg "79.98" xsd:float property_value: DiffFormula "H 1 O 3 P 1" xsd:string property_value: DiffMono "79.966331" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00696 +is_a: MOD:00696 ! phosphorylated residue [Term] id: MOD:01456 @@ -26342,7 +26345,7 @@ property_value: DiffAvg "79.98" xsd:float property_value: DiffFormula "H 1 O 3 P 1" xsd:string property_value: DiffMono "79.966331" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00696 +is_a: MOD:00696 ! phosphorylated residue [Term] id: MOD:01457 @@ -26357,9 +26360,9 @@ property_value: MassAvg "103.14" xsd:float property_value: MassMono "103.009185" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00749 -is_a: MOD:00916 -is_a: MOD:02088 +is_a: MOD:00749 ! sulfur substitution for oxygen +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:02088 ! natural, standard, encoded residue substitution [Term] id: MOD:01458 @@ -26375,8 +26378,8 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:1 -is_a: MOD:00408 -is_a: MOD:01696 +is_a: MOD:00408 ! mono N-acetylated residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:01459 @@ -26394,7 +26397,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:199 -is_a: MOD:00552 +is_a: MOD:00552 ! 4x(2)H labeled dimethylated residue [Term] id: MOD:01460 @@ -26405,7 +26408,7 @@ synonym: "N2MeRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00602 +is_a: MOD:00602 ! N-methylated residue [Term] id: MOD:01461 @@ -26414,8 +26417,8 @@ def: "A protein modification that effectively replaces an L-alanine alpha amino subset: PSI-MOD-slim property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00665 -is_a: MOD:01460 +is_a: MOD:00665 ! methylated alanine +is_a: MOD:01460 ! alpha-amino methylated residue [Term] id: MOD:01462 @@ -26425,8 +26428,8 @@ subset: PSI-MOD-slim property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00712 -is_a: MOD:01460 +is_a: MOD:00712 ! methylated proline +is_a: MOD:01460 ! alpha-amino methylated residue [Term] id: MOD:01463 @@ -26436,8 +26439,8 @@ subset: PSI-MOD-slim property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00716 -is_a: MOD:01460 +is_a: MOD:00716 ! methylated methionine +is_a: MOD:01460 ! alpha-amino methylated residue [Term] id: MOD:01464 @@ -26454,8 +26457,8 @@ property_value: MassMono "133.055586" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00913 -is_a: MOD:01700 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01700 ! alpha-amino protonated residue [Term] id: MOD:01465 @@ -26474,8 +26477,8 @@ property_value: MassMono "175.102537" xsd:float property_value: Origin "MOD:001464" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01687 -relationship: derives_from MOD:01464 +is_a: MOD:01687 ! alpha-amino trimethylated residue +relationship: derives_from MOD:01464 ! protonated L-methionine (L-methioninium) residue [Term] id: MOD:01466 @@ -26492,8 +26495,8 @@ property_value: MassMono "273.045964" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:302 -is_a: MOD:00621 -is_a: MOD:00905 +is_a: MOD:00621 ! menadione quinone derivative +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01467 @@ -26510,8 +26513,8 @@ property_value: MassMono "298.131742" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:302 -is_a: MOD:00621 -is_a: MOD:00912 +is_a: MOD:00621 ! menadione quinone derivative +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01468 @@ -26534,8 +26537,8 @@ property_value: MassMono "1723.939410" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:415 -is_a: MOD:00744 -is_a: MOD:02073 +is_a: MOD:00744 ! molybdenum pterin containing modification +is_a: MOD:02073 ! metal or metal cluster coordinated L-selenocysteine residue [Term] id: MOD:01469 @@ -26550,9 +26553,9 @@ property_value: MassAvg "1842.02" xsd:float property_value: MassMono "1841.957004" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00746 -is_a: MOD:00748 -is_a: MOD:02073 +is_a: MOD:00746 ! tungsten containing modified residue +is_a: MOD:00748 ! pterin modified residue +is_a: MOD:02073 ! metal or metal cluster coordinated L-selenocysteine residue [Term] id: MOD:01470 @@ -26583,7 +26586,7 @@ property_value: MassMono "83.037114" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0441 -is_a: MOD:00190 +is_a: MOD:00190 ! dehydrobutyrine (Thr) [Term] id: MOD:01471 @@ -26614,7 +26617,7 @@ property_value: MassMono "83.037114" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0440 -is_a: MOD:00190 +is_a: MOD:00190 ! dehydrobutyrine (Thr) [Term] id: MOD:01472 @@ -26622,7 +26625,7 @@ name: reduced residue def: "A protein modification that effectively either adds neutral hydrogen atoms (proton and electron), or removes oxygen atoms from a residue with or without the addition of hydrogen atoms." [PubMed:18688235] subset: PSI-MOD-slim synonym: "RedRes" EXACT PSI-MOD-label [] -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01473 @@ -26630,7 +26633,7 @@ name: hydrogenated residue def: "A protein modification that effectively adds neutral hydrogen atoms (proton and electron) to a residue." [PubMed:18688235] subset: PSI-MOD-slim synonym: "HRes" EXACT PSI-MOD-label [] -is_a: MOD:01472 +is_a: MOD:01472 ! reduced residue [Term] id: MOD:01474 @@ -26645,10 +26648,10 @@ property_value: MassAvg "485.44" xsd:float property_value: MassMono "485.123302" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:00399 -is_a: MOD:00861 -is_a: MOD:00916 -relationship: derives_from MOD:00159 +relationship: derives_from MOD:00399 ! iodoacetic acid derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue +relationship: derives_from MOD:00159 ! O-phosphopantetheine-L-serine [Term] id: MOD:01475 @@ -26663,10 +26666,10 @@ property_value: MassAvg "484.46" xsd:float property_value: MassMono "484.139286" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:00397 -is_a: MOD:00861 -is_a: MOD:00916 -relationship: derives_from MOD:00159 +relationship: derives_from MOD:00397 ! iodoacetamide derivatized residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue +relationship: derives_from MOD:00159 ! O-phosphopantetheine-L-serine [Term] id: MOD:01476 @@ -26683,7 +26686,7 @@ property_value: MassAvg "165.17" xsd:float property_value: MassMono "165.058992" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01227 +is_a: MOD:01227 ! monofluorinated L-phenylalanine [Term] id: MOD:01477 @@ -26700,7 +26703,7 @@ property_value: MassAvg "165.17" xsd:float property_value: MassMono "165.058992" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01227 +is_a: MOD:01227 ! monofluorinated L-phenylalanine [Term] id: MOD:01478 @@ -26718,7 +26721,7 @@ property_value: MassAvg "165.17" xsd:float property_value: MassMono "165.058992" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01227 +is_a: MOD:01227 ! monofluorinated L-phenylalanine [Term] id: MOD:01479 @@ -26733,7 +26736,7 @@ property_value: MassAvg "204.20" xsd:float property_value: MassMono "204.069891" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01226 +is_a: MOD:01226 ! monofluorinated L-tryptophan [Term] id: MOD:01480 @@ -26748,7 +26751,7 @@ property_value: MassAvg "204.20" xsd:float property_value: MassMono "204.069891" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01226 +is_a: MOD:01226 ! monofluorinated L-tryptophan [Term] id: MOD:01481 @@ -26763,7 +26766,7 @@ property_value: MassAvg "204.20" xsd:float property_value: MassMono "204.069891" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01226 +is_a: MOD:01226 ! monofluorinated L-tryptophan [Term] id: MOD:01482 @@ -26771,7 +26774,7 @@ name: calcium containing modified residue def: "A protein modification that effectively substitutes a calcium atom or a cluster containing calcium for hydrogen atoms, or that coordinates a calcium ion." [PubMed:18688235] subset: PSI-MOD-slim synonym: "CaRes" EXACT PSI-MOD-label [] -is_a: MOD:00698 +is_a: MOD:00698 ! metal or metal cluster containing modified residue [Term] id: MOD:01483 @@ -26783,8 +26786,8 @@ property_value: DiffFormula "C 1 O 1" xsd:string property_value: DiffMono "27.994915" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00493 -is_a: MOD:00671 +is_a: MOD:00493 ! formylated residue +is_a: MOD:00671 ! O-acylated residue [Term] id: MOD:01484 @@ -26805,9 +26808,9 @@ property_value: MassAvg "239.27" xsd:float property_value: MassMono "239.126991" xsd:float property_value: Origin "K, E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02045 -is_a: MOD:00954 -is_a: MOD:01630 +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01630 ! N6-(L-isoglutamyl)-L-lysine [Term] id: MOD:01485 @@ -26826,10 +26829,10 @@ property_value: DiffMono "144.105919" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:532 -is_a: MOD:01428 -is_a: MOD:01430 -is_a: MOD:01516 -is_a: MOD:01518 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01430 ! (18)O isotope tagged reagent +is_a: MOD:01516 ! modifications with monoisotopic mass diferences that are nominally equal at 144.099-144.106 Da. +is_a: MOD:01518 ! iTRAQ4plex reporter+balance reagent acylated residue [Term] id: MOD:01486 @@ -26850,8 +26853,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:532 -is_a: MOD:01485 -is_a: MOD:01711 +is_a: MOD:01485 ! iTRAQ4plex-114 reporter+balance reagent acylated residue +is_a: MOD:01711 ! iTRAQ4plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01487 @@ -26874,9 +26877,9 @@ property_value: MassMono "272.200882" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:532 -is_a: MOD:01485 -is_a: MOD:01709 -is_a: MOD:01875 +is_a: MOD:01485 ! iTRAQ4plex-114 reporter+balance reagent ac ylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01488 @@ -26898,9 +26901,9 @@ property_value: MassMono "307.169248" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:532 -is_a: MOD:00919 -is_a: MOD:01485 -is_a: MOD:01713 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01485 ! iTRAQ4plex-114 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01489 @@ -26917,9 +26920,9 @@ property_value: MassAvg "281.16" xsd:float property_value: MassMono "281.164831" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01485 -is_a: MOD:01709 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01485 ! iTRAQ4plex-114 reporter+balance reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue [Term] id: MOD:01490 @@ -26936,9 +26939,9 @@ property_value: MassAvg "231.14" xsd:float property_value: MassMono "231.137947" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01485 -is_a: MOD:01713 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01485 ! iTRAQ4plex-114 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01491 @@ -26955,9 +26958,9 @@ property_value: MassAvg "245.15" xsd:float property_value: MassMono "245.153598" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01485 -is_a: MOD:01713 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01485 ! iTRAQ4plex-114 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01492 @@ -26976,11 +26979,11 @@ property_value: DiffMono "144.099599" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:533 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01430 -is_a: MOD:01516 -is_a: MOD:01518 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01430 ! (18)O isotope tagged reagent +is_a: MOD:01516 ! modifications with monoisotopic mass diferences that are nominally equal at 144.099-144.106 Da. +is_a: MOD:01518 ! iTRAQ4plex reporter+balance reagent acylated residue [Term] id: MOD:01493 @@ -27001,8 +27004,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:533 -is_a: MOD:01492 -is_a: MOD:01711 +is_a: MOD:01492 ! iTRAQ4plex-115 reporter+balance reagent acylated residue +is_a: MOD:01711 ! iTRAQ4plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01494 @@ -27025,9 +27028,9 @@ property_value: MassMono "272.194562" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:533 -is_a: MOD:01492 -is_a: MOD:01709 -is_a: MOD:01875 +is_a: MOD:01492 ! iTRAQ4plex-115 reporter+balance reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01495 @@ -27049,9 +27052,9 @@ property_value: MassMono "307.162928" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:533 -is_a: MOD:00919 -is_a: MOD:01492 -is_a: MOD:01713 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01492 ! iTRAQ4plex-115 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01496 @@ -27068,9 +27071,9 @@ property_value: MassAvg "281.16" xsd:float property_value: MassMono "281.158511" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01492 -is_a: MOD:01709 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01492 ! iTRAQ4plex-115 reporter+balance reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue [Term] id: MOD:01497 @@ -27087,9 +27090,9 @@ property_value: MassAvg "231.13" xsd:float property_value: MassMono "231.131628" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01492 -is_a: MOD:01713 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01492 ! iTRAQ4plex-115 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01498 @@ -27106,9 +27109,9 @@ property_value: MassAvg "245.15" xsd:float property_value: MassMono "245.147278" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01492 -is_a: MOD:01713 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01492 ! iTRAQ4plex-115 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01499 @@ -27127,10 +27130,10 @@ property_value: DiffMono "144.102062" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01517 -is_a: MOD:01518 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01517 ! modifications with monoisotopic mass differences that are nominally equal at 144.102062 Da +is_a: MOD:01518 ! iTRAQ4plex reporter+balance reagent acylated residue [Term] id: MOD:01500 @@ -27151,8 +27154,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:214 -is_a: MOD:01499 -is_a: MOD:01711 +is_a: MOD:01499 ! iTRAQ4plex-116 reporter+balance reagent acylated residue +is_a: MOD:01711 ! iTRAQ4plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01501 @@ -27175,9 +27178,9 @@ property_value: MassMono "272.197025" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 -is_a: MOD:01499 -is_a: MOD:01709 -is_a: MOD:01875 +is_a: MOD:01499 ! iTRAQ4plex-116 reporter+balance reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01502 @@ -27199,9 +27202,9 @@ property_value: MassMono "307.165391" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 -is_a: MOD:00919 -is_a: MOD:01499 -is_a: MOD:01713 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01499 ! iTRAQ4plex-116 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01503 @@ -27218,9 +27221,9 @@ property_value: MassAvg "281.16" xsd:float property_value: MassMono "281.160974" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01499 -is_a: MOD:01709 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01499 ! iTRAQ4plex-116 reporter+balance reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue [Term] id: MOD:01504 @@ -27237,9 +27240,9 @@ property_value: MassAvg "231.13" xsd:float property_value: MassMono "231.134091" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01499 -is_a: MOD:01713 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01499 ! iTRAQ4plex-116 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01505 @@ -27256,9 +27259,9 @@ property_value: MassAvg "245.15" xsd:float property_value: MassMono "245.149741" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01499 -is_a: MOD:01713 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01499 ! iTRAQ4plex-116 reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01506 @@ -27280,11 +27283,11 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 xref: Unimod:889 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01517 -is_a: MOD:01518 -is_a: MOD:01863 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01517 ! modifications with monoisotopic mass differences that are nominally equal at 144.102062 Da +is_a: MOD:01518 ! iTRAQ4plex reporter+balance reagent acylated residue +is_a: MOD:01863 ! mTRAQ reporter+balance reagent acylated residue [Term] id: MOD:01507 @@ -27309,8 +27312,8 @@ property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:214 xref: Unimod:889 -is_a: MOD:01506 -is_a: MOD:01711 +is_a: MOD:01506 ! iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue +is_a: MOD:01711 ! iTRAQ4plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01508 @@ -27336,9 +27339,9 @@ property_value: MassMono "272.197025" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 -is_a: MOD:01506 -is_a: MOD:01709 -is_a: MOD:01875 +is_a: MOD:01506 ! iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01509 @@ -27364,9 +27367,9 @@ property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 xref: Unimod:889 -is_a: MOD:00919 -is_a: MOD:01506 -is_a: MOD:01713 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01506 ! iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01510 @@ -27383,9 +27386,9 @@ property_value: MassAvg "281.16" xsd:float property_value: MassMono "281.160974" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01506 -is_a: MOD:01709 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01506 ! iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue [Term] id: MOD:01511 @@ -27402,9 +27405,9 @@ property_value: MassAvg "231.13" xsd:float property_value: MassMono "231.134091" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01506 -is_a: MOD:01713 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01506 ! iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01512 @@ -27421,45 +27424,45 @@ property_value: MassAvg "245.15" xsd:float property_value: MassMono "245.149741" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01506 -is_a: MOD:01713 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01506 ! iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue +is_a: MOD:01713 ! iTRAQ4plex reporter+balance reagent O-acylated residue [Term] id: MOD:01513 name: modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.1 Da def: "Modifications that have monoisotopic mass differences from their respective origins that are nominally equal (sometimes called isobaric) at a resolution below 0.1 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00538 +is_a: MOD:00538 ! protein modification categorized by isobaric sets [Term] id: MOD:01514 name: modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.01 Da def: "Modifications that have monoisotopic mass differences from their respective origins that are nominally equal (sometimes called isobaric) at a resolution below 0.01 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01513 +is_a: MOD:01513 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.1 Da [Term] id: MOD:01515 name: modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.000001 Da def: "Modifications that have monoisotopic mass differences from their respective origins that are nominally equal (sometimes called isobaric) at a resolution below 0.000001 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01514 +is_a: MOD:01514 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.01 Da [Term] id: MOD:01516 name: modifications with monoisotopic mass diferences that are nominally equal at 144.099-144.106 Da. def: "Modifications that have monoisotopic mass differences from their respective origins of 144.099-144.106 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01514 +is_a: MOD:01514 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.01 Da [Term] id: MOD:01517 name: modifications with monoisotopic mass differences that are nominally equal at 144.102062 Da def: "Modifications that have monoisotopic mass differences from their respective origins of 144.102062 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01515 -is_a: MOD:01516 +is_a: MOD:01515 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.000001 Da +is_a: MOD:01516 ! modifications with monoisotopic mass diferences that are nominally equal at 144.099-144.106 Da. [Term] id: MOD:01518 @@ -27471,8 +27474,8 @@ synonym: "(4-methylpiperazin-1-yl)acetyl" EXACT PSI-MOD-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 -is_a: MOD:01426 -is_a: MOD:01705 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:01705 ! isotope tagged reagent acylated residue [Term] id: MOD:01519 @@ -27480,21 +27483,21 @@ name: reporter fragment def: "A distinct molecular entity produced from a protein or a protein modification as the result of a fragmentation process." [PubMed:18688235] comment: The reporter fragment is either itself a modification consisting of atoms derived from the original amino acid residues, or its detection can be taken as evidence that particular modified residues had been present. subset: PSI-MOD-slim -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01520 name: modification reporter fragment def: "A distinct molecular entity produced as the result of a fragmentation process performed on a particular modified residue." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01519 +is_a: MOD:01519 ! reporter fragment [Term] id: MOD:01521 name: iTRAQ4plex reporter fragment def: "A protein modification reporter fragment produced by an Applied Biosystems iTRAQ4plex reagent derivatized residue." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01520 +is_a: MOD:01520 ! modification reporter fragment [Term] id: MOD:01522 @@ -27508,8 +27511,8 @@ property_value: MassAvg "114.11" xsd:float property_value: MassMono "114.110680" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01521 -relationship: derives_from MOD:01485 +is_a: MOD:01521 ! iTRAQ4plex reporter fragment +relationship: derives_from MOD:01485 ! iTRAQ4plex-114 reporter+balance reagent acylated residue [Term] id: MOD:01523 @@ -27523,8 +27526,8 @@ property_value: MassAvg "115.11" xsd:float property_value: MassMono "115.107715" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01521 -relationship: derives_from MOD:01492 +is_a: MOD:01521 ! iTRAQ4plex reporter fragment +relationship: derives_from MOD:01492 ! iTRAQ4plex-115 reporter+balance reagent acylated residue [Term] id: MOD:01524 @@ -27538,8 +27541,8 @@ property_value: MassAvg "116.11" xsd:float property_value: MassMono "116.111069" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01521 -relationship: derives_from MOD:01499 +is_a: MOD:01521 ! iTRAQ4plex reporter fragment +relationship: derives_from MOD:01499 ! iTRAQ4plex-116 reporter+balance reagent acylated residue [Term] id: MOD:01525 @@ -27553,9 +27556,9 @@ property_value: MassAvg "117.11" xsd:float property_value: MassMono "117.114424" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01521 -is_a: MOD:01870 -relationship: derives_from MOD:01506 +is_a: MOD:01521 ! iTRAQ4plex reporter fragment +is_a: MOD:01870 ! mTRAQ reporter fragment +relationship: derives_from MOD:01506 ! iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue [Term] id: MOD:01526 @@ -27566,15 +27569,15 @@ subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01426 -is_a: MOD:01705 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:01705 ! isotope tagged reagent acylated residue [Term] id: MOD:01527 name: residue reporter fragment def: "A distinct molecular entity produced from a particular amino acid residue as the result of a fragmentation process." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01519 +is_a: MOD:01519 ! reporter fragment [Term] id: MOD:01528 @@ -27593,10 +27596,10 @@ property_value: DiffMono "304.205359" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01591 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01591 ! modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da [Term] id: MOD:01529 @@ -27616,8 +27619,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:730 -is_a: MOD:01528 -is_a: MOD:01712 +is_a: MOD:01528 ! iTRAQ8plex-113 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01530 @@ -27639,9 +27642,9 @@ property_value: MassMono "432.300322" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01528 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01528 ! iTRAQ8plex-113 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01531 @@ -27662,9 +27665,9 @@ property_value: MassMono "467.268688" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:00919 -is_a: MOD:01528 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01528 ! iTRAQ8plex-113 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01532 @@ -27684,9 +27687,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.264271" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01528 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01528 ! iTRAQ8plex-113 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01533 @@ -27706,9 +27709,9 @@ property_value: MassAvg "391.24" xsd:float property_value: MassMono "391.237388" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01528 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01528 ! iTRAQ8plex-113 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01534 @@ -27728,9 +27731,9 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.253038" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01528 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01528 ! iTRAQ8plex-113 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01535 @@ -27749,10 +27752,10 @@ property_value: DiffMono "304.205359" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01591 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01591 ! modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da [Term] id: MOD:01536 @@ -27772,8 +27775,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:730 -is_a: MOD:01535 -is_a: MOD:01712 +is_a: MOD:01535 ! iTRAQ8plex-114 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01537 @@ -27795,9 +27798,9 @@ property_value: MassMono "432.300322" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01535 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01535 ! iTRAQ8plex-114 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01538 @@ -27818,9 +27821,9 @@ property_value: MassMono "467.268688" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:00919 -is_a: MOD:01535 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01535 ! iTRAQ8plex-114 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01539 @@ -27840,9 +27843,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.264271" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01535 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01535 ! iTRAQ8plex-114 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01540 @@ -27858,9 +27861,9 @@ property_value: MassAvg "391.24" xsd:float property_value: MassMono "391.237388" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01535 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01535 ! iTRAQ8plex-114 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01541 @@ -27876,9 +27879,9 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.253038" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01535 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01535 ! iTRAQ8plex-114 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01542 @@ -27896,10 +27899,10 @@ property_value: DiffMono "304.199039" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01584 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01584 ! modifications with monoisotopic mass differences that are nominally equal at 304.199039 Da [Term] id: MOD:01543 @@ -27918,8 +27921,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:731 -is_a: MOD:01542 -is_a: MOD:01712 +is_a: MOD:01542 ! iTRAQ8plex-115 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01544 @@ -27940,9 +27943,9 @@ property_value: MassMono "432.294002" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01542 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01542 ! iTRAQ8plex-115 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01545 @@ -27962,9 +27965,9 @@ property_value: MassMono "467.262368" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:00919 -is_a: MOD:01542 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01542 ! iTRAQ8plex-115 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01546 @@ -27980,9 +27983,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.257951" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01542 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01542 ! iTRAQ8plex-115 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01547 @@ -27998,9 +28001,9 @@ property_value: MassAvg "391.23" xsd:float property_value: MassMono "391.231068" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01542 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01542 ! iTRAQ8plex-115 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01548 @@ -28016,9 +28019,9 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.246718" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01542 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01542 ! iTRAQ8plex-115 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01549 @@ -28037,10 +28040,10 @@ property_value: DiffMono "304.205359" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01591 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01591 ! modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da [Term] id: MOD:01550 @@ -28060,8 +28063,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:730 -is_a: MOD:01549 -is_a: MOD:01712 +is_a: MOD:01549 ! iTRAQ8plex-116 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01551 @@ -28083,9 +28086,9 @@ property_value: MassMono "432.300322" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01549 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01549 ! iTRAQ8plex-116 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01552 @@ -28106,9 +28109,9 @@ property_value: MassMono "467.268688" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:00919 -is_a: MOD:01549 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01549 ! iTRAQ8plex-116 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01553 @@ -28124,9 +28127,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.264271" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01549 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01549 ! iTRAQ8plex-116 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01554 @@ -28142,9 +28145,9 @@ property_value: MassAvg "391.24" xsd:float property_value: MassMono "391.237388" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01549 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01549 ! iTRAQ8plex-116 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01555 @@ -28160,9 +28163,9 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.253038" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01549 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01549 ! iTRAQ8plex-116 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01556 @@ -28181,10 +28184,10 @@ property_value: DiffMono "304.205359" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01591 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01591 ! modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da [Term] id: MOD:01557 @@ -28204,8 +28207,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:730 -is_a: MOD:01556 -is_a: MOD:01712 +is_a: MOD:01556 ! iTRAQ8plex-117 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01558 @@ -28227,9 +28230,9 @@ property_value: MassMono "432.300322" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:01556 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01556 ! iTRAQ8plex-117 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01559 @@ -28250,9 +28253,9 @@ property_value: MassMono "467.268688" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:730 -is_a: MOD:00919 -is_a: MOD:01556 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01556 ! iTRAQ8plex-117 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01560 @@ -28268,9 +28271,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.264271" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01556 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01556 ! iTRAQ8plex-117 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01561 @@ -28286,9 +28289,9 @@ property_value: MassAvg "391.24" xsd:float property_value: MassMono "391.237388" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01556 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01556 ! iTRAQ8plex-117 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01562 @@ -28304,9 +28307,9 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.253038" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01556 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01556 ! iTRAQ8plex-117 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01563 @@ -28324,10 +28327,10 @@ property_value: DiffMono "304.199039" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01584 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01584 ! modifications with monoisotopic mass differences that are nominally equal at 304.199039 Da [Term] id: MOD:01564 @@ -28346,8 +28349,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:731 -is_a: MOD:01563 -is_a: MOD:01712 +is_a: MOD:01563 ! iTRAQ8plex-118 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01565 @@ -28368,9 +28371,9 @@ property_value: MassMono "432.294002" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01563 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01563 ! iTRAQ8plex-118 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01566 @@ -28390,9 +28393,9 @@ property_value: MassMono "467.262368" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:00919 -is_a: MOD:01563 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01563 ! iTRAQ8plex-118 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01567 @@ -28408,9 +28411,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.257951" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01563 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01563 ! iTRAQ8plex-118 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01568 @@ -28426,9 +28429,9 @@ property_value: MassAvg "391.23" xsd:float property_value: MassMono "391.231068" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01563 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01563 ! iTRAQ8plex-118 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01569 @@ -28444,9 +28447,9 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.246718" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01563 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01563 ! iTRAQ8plex-118 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01570 @@ -28464,10 +28467,10 @@ property_value: DiffMono "304.199039" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01584 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01584 ! modifications with monoisotopic mass differences that are nominally equal at 304.199039 Da [Term] id: MOD:01571 @@ -28486,8 +28489,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:731 -is_a: MOD:01570 -is_a: MOD:01712 +is_a: MOD:01570 ! iTRAQ8plex-119 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01572 @@ -28508,9 +28511,9 @@ property_value: MassMono "432.294002" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01570 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01570 ! iTRAQ8plex-119 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01573 @@ -28530,9 +28533,9 @@ property_value: MassMono "467.262368" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:00919 -is_a: MOD:01570 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01570 ! iTRAQ8plex-119 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01574 @@ -28548,9 +28551,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.257951" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01570 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01570 ! iTRAQ8plex-119 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01575 @@ -28566,9 +28569,9 @@ property_value: MassAvg "391.23" xsd:float property_value: MassMono "391.231068" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01570 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01570 ! iTRAQ8plex-119 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01576 @@ -28584,9 +28587,9 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.246718" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01570 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01570 ! iTRAQ8plex-119 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01577 @@ -28604,10 +28607,10 @@ property_value: DiffMono "304.199039" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01526 -is_a: MOD:01584 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01526 ! iTRAQ8plex reporter+balance reagent acylated residue +is_a: MOD:01584 ! modifications with monoisotopic mass differences that are nominally equal at 304.199039 Da [Term] id: MOD:01578 @@ -28626,8 +28629,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:731 -is_a: MOD:01577 -is_a: MOD:01712 +is_a: MOD:01577 ! iTRAQ8plex-121 reporter+balance reagent acylated residue +is_a: MOD:01712 ! iTRAQ8plex reporter+balance reagent acylated N-terminal [Term] id: MOD:01579 @@ -28648,9 +28651,9 @@ property_value: MassMono "432.294002" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:01577 -is_a: MOD:01710 -is_a: MOD:01875 +is_a: MOD:01577 ! iTRAQ8plex-121 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01580 @@ -28670,9 +28673,9 @@ property_value: MassMono "467.262368" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:731 -is_a: MOD:00919 -is_a: MOD:01577 -is_a: MOD:01714 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01577 ! iTRAQ8plex-121 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01581 @@ -28688,9 +28691,9 @@ property_value: MassAvg "441.26" xsd:float property_value: MassMono "441.257951" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01577 -is_a: MOD:01710 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01577 ! iTRAQ8plex-121 reporter+balance reagent acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01582 @@ -28706,9 +28709,9 @@ property_value: MassAvg "391.23" xsd:float property_value: MassMono "391.231068" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01577 -is_a: MOD:01714 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01577 ! iTRAQ8plex-121 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01583 @@ -28724,17 +28727,17 @@ property_value: MassAvg "405.25" xsd:float property_value: MassMono "405.246718" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01577 -is_a: MOD:01714 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01577 ! iTRAQ8plex-121 reporter+balance reagent acylated residue +is_a: MOD:01714 ! iTRAQ8plex reporter+balance reagent O-acylated residue [Term] id: MOD:01584 name: modifications with monoisotopic mass differences that are nominally equal at 304.199039 Da def: "Modifications that have monoisotopic mass differences from their respective origins of 304.199039 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01515 -is_a: MOD:01592 +is_a: MOD:01515 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.000001 Da +is_a: MOD:01592 ! modifications with monoisotopic mass differences that are nominally equal at 304.199-304.206 Da [Term] id: MOD:01585 @@ -28757,10 +28760,10 @@ property_value: Origin "G, S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0422 -is_a: MOD:00885 -is_a: MOD:02047 -is_a: MOD:02055 -is_a: MOD:00954 +is_a: MOD:00885 ! ester crosslinked residues +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01586 @@ -28783,10 +28786,10 @@ property_value: Origin "G, T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0423 -is_a: MOD:00885 -is_a: MOD:02047 -is_a: MOD:00917 -is_a: MOD:00954 +is_a: MOD:00885 ! ester crosslinked residues +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01587 @@ -28808,8 +28811,8 @@ property_value: MassMono "210.040558" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0399 -is_a: MOD:00861 -is_a: MOD:00916 +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01588 @@ -28833,8 +28836,8 @@ property_value: MassMono "253.094785" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0400 -is_a: MOD:00861 -is_a: MOD:00916 +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01589 @@ -28857,7 +28860,7 @@ property_value: MassMono "331.137950" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0547 -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:01590 @@ -28874,24 +28877,24 @@ property_value: MassAvg "390.57" xsd:float property_value: MassMono "390.267114" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00437 -is_a: MOD:00601 -is_a: MOD:01115 +is_a: MOD:00437 ! farnesylated residue +is_a: MOD:00601 ! cyclized residue +is_a: MOD:01115 ! isoprenylated tryptophan [Term] id: MOD:01591 name: modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da def: "Modifications that have monoisotopic mass differences from their respective origins of 304.205359 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01515 -is_a: MOD:01592 +is_a: MOD:01515 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.000001 Da +is_a: MOD:01592 ! modifications with monoisotopic mass differences that are nominally equal at 304.199-304.206 Da [Term] id: MOD:01592 name: modifications with monoisotopic mass differences that are nominally equal at 304.199-304.206 Da def: "Modifications that have monoisotopic mass differences from their respective origins of 304.199-304.206 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01514 +is_a: MOD:01514 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.01 Da [Term] id: MOD:01593 @@ -28899,7 +28902,7 @@ name: iTRAQ8plex reporter fragment def: "A protein modification reporter fragment produced by an Applied Biosystems iTRAQ8plex reagent derivatized residue." [PubMed:18688235] subset: PSI-MOD-slim synonym: "4-methyl-1-methylidenepiperazin-1-ium" EXACT PSI-MOD-alternate [] -is_a: MOD:01520 +is_a: MOD:01520 ! modification reporter fragment [Term] id: MOD:01594 @@ -28913,8 +28916,8 @@ property_value: MassAvg "113.11" xsd:float property_value: MassMono "113.107325" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01528 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01528 ! iTRAQ8plex-113 reporter+balance reagent acylated residue [Term] id: MOD:01595 @@ -28928,8 +28931,8 @@ property_value: MassAvg "114.11" xsd:float property_value: MassMono "114.110680" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01535 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01535 ! iTRAQ8plex-114 reporter+balance reagent acylated residue [Term] id: MOD:01596 @@ -28943,8 +28946,8 @@ property_value: MassAvg "115.11" xsd:float property_value: MassMono "115.107715" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01542 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01542 ! iTRAQ8plex-115 reporter+balance reagent acylated residue [Term] id: MOD:01597 @@ -28958,8 +28961,8 @@ property_value: MassAvg "116.11" xsd:float property_value: MassMono "116.111069" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01549 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01549 ! iTRAQ8plex-116 reporter+balance reagent acylated residue [Term] id: MOD:01598 @@ -28973,8 +28976,8 @@ property_value: MassAvg "117.11" xsd:float property_value: MassMono "117.114424" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01556 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01556 ! iTRAQ8plex-117 reporter+balance reagent acylated residue [Term] id: MOD:01599 @@ -28988,8 +28991,8 @@ property_value: MassAvg "118.11" xsd:float property_value: MassMono "118.111459" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01563 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01563 ! iTRAQ8plex-118 reporter+balance reagent acylated residue [Term] id: MOD:01600 @@ -29003,8 +29006,8 @@ property_value: MassAvg "119.11" xsd:float property_value: MassMono "119.114814" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01570 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01570 ! iTRAQ8plex-119 reporter+balance reagent acylated residue [Term] id: MOD:01601 @@ -29018,8 +29021,8 @@ property_value: MassAvg "121.12" xsd:float property_value: MassMono "121.121524" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01593 -relationship: derives_from MOD:01577 +is_a: MOD:01593 ! iTRAQ8plex reporter fragment +relationship: derives_from MOD:01577 ! iTRAQ8plex-121 reporter+balance reagent acylated residue [Term] id: MOD:01602 @@ -29039,8 +29042,8 @@ property_value: MassMono "257.119798" xsd:float property_value: Origin "K, M" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0401 -is_a: MOD:02051 -is_a: MOD:02052 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:02052 ! crosslinked L-methionine residue [Term] id: MOD:01603 @@ -29056,8 +29059,8 @@ property_value: MassMono "130.089033" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:995 -is_a: MOD:00843 -is_a: MOD:00912 +is_a: MOD:00843 ! (15)N labeled residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01604 @@ -29072,8 +29075,8 @@ property_value: MassAvg "160.09" xsd:float property_value: MassMono "160.089251" xsd:float property_value: Origin "R" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00843 -is_a: MOD:00902 +is_a: MOD:00843 ! (15)N labeled residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:01605 @@ -29093,7 +29096,7 @@ property_value: MassMono "272.100836" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0406 -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01606 @@ -29109,8 +29112,8 @@ property_value: MassAvg "352.24" xsd:float property_value: MassMono "352.067167" xsd:float property_value: Origin "E" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00861 -is_a: MOD:00906 +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01607 @@ -29130,7 +29133,7 @@ property_value: MassAvg "256.26" xsd:float property_value: MassMono "256.105922" xsd:float property_value: Origin "E" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01608 @@ -29152,7 +29155,7 @@ property_value: MassMono "257.137556" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0407 -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01609 @@ -29170,9 +29173,9 @@ property_value: MassMono "364.127051" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0504 -is_a: MOD:00918 -relationship: has_functional_parent MOD:00222 -relationship: has_functional_parent MOD:01664 +is_a: MOD:00918 ! modified L-tryptophan residue +relationship: has_functional_parent MOD:00222 ! 2'-alpha-mannosyl-L-tryptophan +relationship: has_functional_parent MOD:01664 ! 7'-hydroxy-L-tryptophan [Term] id: MOD:01610 @@ -29192,8 +29195,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0412 -is_a: MOD:01689 -is_a: MOD:01803 +is_a: MOD:01689 ! alpha-carboxyl methylated residue +is_a: MOD:01803 ! O-methylated threonine [Term] id: MOD:01611 @@ -29217,9 +29220,9 @@ property_value: MassAvg "692.60" xsd:float property_value: MassMono "692.141411" xsd:float property_value: Origin "C, H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02044 -is_a: MOD:02048 -is_a: MOD:01621 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02048 ! crosslinked L-histidine residue +is_a: MOD:01621 ! flavin crosslinked residues [Term] id: MOD:01612 @@ -29242,7 +29245,7 @@ property_value: MassMono "288.959976" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0411 -is_a: MOD:01228 +is_a: MOD:01228 ! monoiodinated tyrosine [Term] id: MOD:01613 @@ -29265,7 +29268,7 @@ property_value: MassMono "414.856624" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0408 -is_a: MOD:01140 +is_a: MOD:01140 ! diiodinated tyrosine [Term] id: MOD:01614 @@ -29291,8 +29294,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0409 -is_a: MOD:00908 -is_a: MOD:01165 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01165 ! adenylated residue [Term] id: MOD:01615 @@ -29315,9 +29318,9 @@ property_value: Origin "C, G" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0410 -is_a: MOD:00395 -is_a: MOD:02047 -is_a: MOD:00954 +is_a: MOD:00395 ! thioester crosslinked residues +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01616 @@ -29337,7 +29340,7 @@ property_value: MassMono "299.918933" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0417 -is_a: MOD:01620 +is_a: MOD:01620 ! polysulfide crosslinked residues [Term] id: MOD:01617 @@ -29356,8 +29359,8 @@ property_value: MassMono "343.066832" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0596 -is_a: MOD:00005 -is_a: MOD:01804 +is_a: MOD:00005 ! O-glycosyl-L-threonine +is_a: MOD:01804 ! glycosylphosphorylated residue [Term] id: MOD:01618 @@ -29378,33 +29381,33 @@ property_value: Origin "A, N" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0418 -is_a: MOD:00688 -is_a: MOD:02040 -is_a: MOD:02042 -is_a: MOD:00946 +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:02040 ! crosslinked L-alanine residue +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia [Term] id: MOD:01619 name: multisulfide crosslinked residues def: "A protein modification that crosslinks two cysteine residues by formation of a chain of two or more bonded sulfur atoms." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00033 -is_a: MOD:02044 +is_a: MOD:00033 ! crosslinked residues +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:01620 name: polysulfide crosslinked residues def: "A protein modification that crosslinks two cysteine residues by formation of a chain of three or more bonded sulfur atoms." [PubMed:18688235] -is_a: MOD:00860 -is_a: MOD:01619 +is_a: MOD:00860 ! sulfur containing modified residue +is_a: MOD:01619 ! multisulfide crosslinked residues [Term] id: MOD:01621 name: flavin crosslinked residues def: "A protein modification that crosslinks two or more amino acid residues by forming an adduct with a compound containing a flavin group." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00033 -is_a: MOD:00697 +is_a: MOD:00033 ! crosslinked residues +is_a: MOD:00697 ! flavin modified residue [Term] id: MOD:01622 @@ -29421,8 +29424,8 @@ property_value: MassMono "202.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 -is_a: MOD:00425 -is_a: MOD:00918 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01623 @@ -29438,7 +29441,7 @@ property_value: MassMono "72.998620" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:01625 +is_a: MOD:01625 ! 1-thioglycine [Term] id: MOD:01624 @@ -29462,9 +29465,9 @@ property_value: MassMono "154.037842" xsd:float property_value: Origin "G, N" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0450 -is_a: MOD:02042 -is_a: MOD:00946 -is_a: MOD:01628 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia +is_a: MOD:01628 ! (2-aminosuccinimidyl)acetic acid [Term] id: MOD:01625 @@ -29485,8 +29488,8 @@ property_value: DiffFormula "C 0 H 0 N 0 O -1 S 1" xsd:string property_value: DiffMono "15.977156" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00749 -is_a: MOD:00908 +is_a: MOD:00749 ! sulfur substitution for oxygen +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:01626 @@ -29512,7 +29515,7 @@ property_value: DiffAvg "-2.02" xsd:float property_value: DiffFormula "C 0 H -2 N 0 O 0 S 0" xsd:string property_value: DiffMono "-2.015650" xsd:float property_value: Source "natural" xsd:string -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01627 @@ -29525,9 +29528,9 @@ property_value: MassAvg "251.17" xsd:float property_value: MassMono "251.947170" xsd:float property_value: Origin "C, X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00692 -is_a: MOD:00859 -is_a: MOD:02044 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:01628 @@ -29540,8 +29543,8 @@ property_value: MassAvg "154.13" xsd:float property_value: MassMono "154.037842" xsd:float property_value: Origin "G, X" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:02047 -is_a: MOD:01944 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:01944 ! 2-aminosuccinimide ring crosslinked residues [Term] id: MOD:01629 @@ -29557,8 +29560,8 @@ property_value: MassMono "286.086152" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00859 -is_a: MOD:02044 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:02044 ! crosslinked L-cysteine residue [Term] id: MOD:01630 @@ -29578,10 +29581,10 @@ property_value: MassMono "239.126991" xsd:float property_value: Origin "K, X" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0397 -is_a: MOD:02051 -is_a: MOD:01875 -is_a: MOD:00688 -is_a: MOD:00859 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01631 @@ -29594,8 +29597,8 @@ property_value: DiffFormula "C -3 H -5 N -1 O -1" xsd:string property_value: DiffMono "-71.037114" xsd:float property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00901 -is_a: MOD:01651 +is_a: MOD:00901 ! modified L-alanine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01632 @@ -29608,8 +29611,8 @@ property_value: DiffFormula "C -6 H -12 N -4 O -1" xsd:string property_value: DiffMono "-156.101111" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00902 -is_a: MOD:01651 +is_a: MOD:00902 ! modified L-arginine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01633 @@ -29622,8 +29625,8 @@ property_value: DiffFormula "C -4 H -6 N -2 O -2" xsd:string property_value: DiffMono "-114.042927" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00903 -is_a: MOD:01651 +is_a: MOD:00903 ! modified L-asparagine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01634 @@ -29636,8 +29639,8 @@ property_value: DiffFormula "C -4 H -5 N -1 O -3" xsd:string property_value: DiffMono "-115.026943" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00904 -is_a: MOD:01651 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01635 @@ -29650,8 +29653,8 @@ property_value: DiffFormula "C -3 H -5 N -1 O -1 S -1" xsd:string property_value: DiffMono "-103.009185" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00905 -is_a: MOD:01651 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01636 @@ -29664,8 +29667,8 @@ property_value: DiffFormula "C -5 H -7 N -1 O -3" xsd:string property_value: DiffMono "-129.042593" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00906 -is_a: MOD:01651 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01637 @@ -29678,8 +29681,8 @@ property_value: DiffFormula "C -5 H -8 N -2 O -2" xsd:string property_value: DiffMono "-128.058578" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00907 -is_a: MOD:01651 +is_a: MOD:00907 ! modified L-glutamine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01638 @@ -29692,8 +29695,8 @@ property_value: DiffFormula "C -2 H -3 N -1 O -1" xsd:string property_value: DiffMono "-57.021464" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00908 -is_a: MOD:01651 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01639 @@ -29706,8 +29709,8 @@ property_value: DiffFormula "C -6 H -7 N -3 O -1" xsd:string property_value: DiffMono "-137.058912" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00909 -is_a: MOD:01651 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01640 @@ -29720,8 +29723,8 @@ property_value: DiffFormula "C -6 H -11 N -1 O -1" xsd:string property_value: DiffMono "-113.084064" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00910 -is_a: MOD:01651 +is_a: MOD:00910 ! modified L-isoleucine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01641 @@ -29734,8 +29737,8 @@ property_value: DiffFormula "C -6 H -11 N -1 O -1" xsd:string property_value: DiffMono "-113.084064" xsd:float property_value: Origin "L" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00911 -is_a: MOD:01651 +is_a: MOD:00911 ! modified L-leucine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01642 @@ -29748,8 +29751,8 @@ property_value: DiffFormula "C -6 H -12 N -2 O -1" xsd:string property_value: DiffMono "-128.094963" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00912 -is_a: MOD:01651 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01643 @@ -29765,8 +29768,8 @@ property_value: DiffMono "-131.040485" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string xref: Unimod:765 -is_a: MOD:00913 -is_a: MOD:01651 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01644 @@ -29779,8 +29782,8 @@ property_value: DiffFormula "C -9 H -9 N -1 O -1" xsd:string property_value: DiffMono "-147.068414" xsd:float property_value: Origin "F" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00914 -is_a: MOD:01651 +is_a: MOD:00914 ! modified L-phenylalanine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01645 @@ -29793,8 +29796,8 @@ property_value: DiffFormula "C -5 H -7 N -1 O -1" xsd:string property_value: DiffMono "-97.052764" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00915 -is_a: MOD:01651 +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01646 @@ -29807,8 +29810,8 @@ property_value: DiffFormula "C -3 H -5 N -1 O -2" xsd:string property_value: DiffMono "-87.032028" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00916 -is_a: MOD:01651 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01647 @@ -29821,8 +29824,8 @@ property_value: DiffFormula "C -4 H -7 N -1 O -2" xsd:string property_value: DiffMono "-101.047678" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00917 -is_a: MOD:01651 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01648 @@ -29835,8 +29838,8 @@ property_value: DiffFormula "C -11 H -10 N -2 O -1" xsd:string property_value: DiffMono "-186.079313" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00918 -is_a: MOD:01651 +is_a: MOD:00918 ! modified L-tryptophan residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01649 @@ -29849,8 +29852,8 @@ property_value: DiffFormula "C -9 H -9 N -1 O -2" xsd:string property_value: DiffMono "-163.063329" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00919 -is_a: MOD:01651 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01650 @@ -29863,8 +29866,8 @@ property_value: DiffFormula "C -5 H -9 N -1 O -1" xsd:string property_value: DiffMono "-99.068414" xsd:float property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00920 -is_a: MOD:01651 +is_a: MOD:00920 ! modified L-valine residue +is_a: MOD:01651 ! natural, standard, encoded residue removal [Term] id: MOD:01651 @@ -29874,8 +29877,8 @@ comment: This represents the loss of an encoded residue in a polypeptide. subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00009 -is_a: MOD:01156 +is_a: MOD:00009 ! natural residue +is_a: MOD:01156 ! protein modification characterized by chemical process [Term] id: MOD:01652 @@ -29884,7 +29887,7 @@ def: "A protein modification that is produced by formation of an adduct with a s comment: These reagents typically react with N6-amino group of lysine residues and a free alpha-amino group of a peptide. property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01653 @@ -29900,7 +29903,7 @@ property_value: DiffMono "233.051050" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:139 -is_a: MOD:01652 +is_a: MOD:01652 ! sulfonyl halide reagent derivatized residue [Term] id: MOD:01654 @@ -29918,8 +29921,8 @@ property_value: MassMono "361.146013" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:139 -is_a: MOD:00912 -is_a: MOD:01653 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01653 ! dansyl chloride derivatized residue [Term] id: MOD:01655 @@ -29934,7 +29937,7 @@ property_value: DiffMono "233.051050" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:139 -is_a: MOD:01653 +is_a: MOD:01653 ! dansyl chloride derivatized residue [Term] id: MOD:01656 @@ -29947,7 +29950,7 @@ property_value: DiffFormula "C 14 H 13 N 3 O 2 S 1" xsd:string property_value: DiffMono "287.072848" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01652 +is_a: MOD:01652 ! sulfonyl halide reagent derivatized residue [Term] id: MOD:01657 @@ -29963,8 +29966,8 @@ property_value: MassAvg "415.51" xsd:float property_value: MassMono "415.167811" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00912 -is_a: MOD:01656 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01656 ! Dabsyl chloride derivatized residue [Term] id: MOD:01658 @@ -29977,7 +29980,7 @@ property_value: DiffMono "287.072848" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01656 +is_a: MOD:01656 ! Dabsyl chloride derivatized residue [Term] id: MOD:01659 @@ -29993,7 +29996,7 @@ property_value: DiffFormula "C 22 H 16 N 2 O 7 S 2" xsd:string property_value: DiffMono "484.039893" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01660 @@ -30012,8 +30015,8 @@ property_value: MassAvg "587.64" xsd:float property_value: MassMono "587.049078" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00905 -is_a: MOD:01659 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01659 ! Uniblue A derivatized residue [Term] id: MOD:01661 @@ -30032,8 +30035,8 @@ property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0662 -is_a: MOD:00919 -is_a: MOD:01154 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01154 ! pyruvic acid [Term] id: MOD:01662 @@ -30051,8 +30054,8 @@ property_value: MassAvg "669.43" xsd:float property_value: MassMono "669.119687" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00752 -is_a: MOD:00907 +is_a: MOD:00752 ! adenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:01663 @@ -30071,8 +30074,8 @@ property_value: MassAvg "642.41" xsd:float property_value: MassMono "642.108787" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00752 -is_a: MOD:00917 +is_a: MOD:00752 ! adenosine diphosphoribosyl (ADP-ribosyl) modified residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:01664 @@ -30090,7 +30093,7 @@ property_value: MassMono "202.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0427 -is_a: MOD:01622 +is_a: MOD:01622 ! monohydroxylated tryptophan [Term] id: MOD:01665 @@ -30103,8 +30106,8 @@ synonym: "N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-valine" EXACT RESID-name [] property_value: Origin "V" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00750 -is_a: MOD:00920 +is_a: MOD:00750 ! deoxyribonucleic acid linked residue +is_a: MOD:00920 ! modified L-valine residue [Term] id: MOD:01666 @@ -30119,7 +30122,7 @@ property_value: DiffFormula "C 23 H 22 O 7" xsd:string property_value: DiffMono "410.136553" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01667 @@ -30137,8 +30140,8 @@ property_value: MassAvg "538.60" xsd:float property_value: MassMono "538.231516" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00912 -is_a: MOD:01666 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01666 ! epicocconone derivatized residue [Term] id: MOD:01668 @@ -30156,8 +30159,8 @@ property_value: MassAvg "898.63" xsd:float property_value: MassMono "898.168428" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00895 -is_a: MOD:00904 +is_a: MOD:00895 ! FAD modified residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:01669 @@ -30182,9 +30185,9 @@ property_value: MassMono "198.148061" xsd:float property_value: Origin "R" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:37 -is_a: MOD:00430 -is_a: MOD:00602 -is_a: MOD:00658 +is_a: MOD:00430 ! trimethylated residue +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00658 ! methylated arginine [Term] id: MOD:01670 @@ -30204,9 +30207,9 @@ property_value: MassAvg "162.62" xsd:float property_value: MassMono "162.055991" xsd:float property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00912 -is_a: MOD:01672 -is_a: MOD:01911 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01672 ! halogenated lysine +is_a: MOD:01911 ! monochlorinated residue [Term] id: MOD:01671 @@ -30227,15 +30230,15 @@ property_value: MassAvg "216.19" xsd:float property_value: MassMono "216.074621" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00671 -is_a: MOD:01978 +is_a: MOD:00671 ! O-acylated residue +is_a: MOD:01978 ! O-(L-isoaspartyl)-L-threonine [Term] id: MOD:01672 name: halogenated lysine def: "A protein modification that effectively substitutes a hydrogen atom of an L-lysine residue with a halogen atom." [PubMed:18688235] property_value: Origin "K" xsd:string -is_a: MOD:00694 +is_a: MOD:00694 ! halogen containing residue [Term] id: MOD:01673 @@ -30250,7 +30253,7 @@ property_value: DiffFormula "C 8 H 13 N 1 O 5" xsd:string property_value: DiffMono "203.079373" xsd:float property_value: Origin "X" xsd:string xref: Unimod:43 -is_a: MOD:00436 +is_a: MOD:00436 ! N-acetylhexosaminylated residue [Term] id: MOD:01674 @@ -30278,8 +30281,8 @@ property_value: MassMono "317.122300" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:43 -is_a: MOD:00160 -is_a: MOD:01673 +is_a: MOD:00160 ! N4-glycosyl-L-asparagine +is_a: MOD:01673 ! N-acetylaminohexosylated residue [Term] id: MOD:01675 @@ -30305,8 +30308,8 @@ property_value: MassMono "290.111401" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:43 -is_a: MOD:00002 -is_a: MOD:01673 +is_a: MOD:00002 ! O-glycosyl-L-serine +is_a: MOD:01673 ! N-acetylaminohexosylated residue [Term] id: MOD:01676 @@ -30330,8 +30333,8 @@ property_value: MassMono "304.127051" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:43 -is_a: MOD:00005 -is_a: MOD:01673 +is_a: MOD:00005 ! O-glycosyl-L-threonine +is_a: MOD:01673 ! N-acetylaminohexosylated residue [Term] id: MOD:01677 @@ -30354,8 +30357,8 @@ property_value: MassAvg "316.31" xsd:float property_value: MassMono "316.127051" xsd:float property_value: Origin "P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00915 -relationship: contains MOD:01673 +is_a: MOD:00915 ! modified L-proline residue +relationship: contains MOD:01673 ! N-acetylaminohexosylated residue [Term] id: MOD:01678 @@ -30381,8 +30384,8 @@ property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:5 xref: uniprot.ptm:PTM-0675 -is_a: MOD:00912 -is_a: MOD:00398 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:00398 ! carbamoylated residue [Term] id: MOD:01679 @@ -30401,7 +30404,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:5 -is_a: MOD:00398 +is_a: MOD:00398 ! carbamoylated residue [Term] id: MOD:01680 @@ -30421,8 +30424,8 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:34 -is_a: MOD:00599 -is_a: MOD:01460 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:01460 ! alpha-amino methylated residue [Term] id: MOD:01681 @@ -30441,8 +30444,8 @@ property_value: MassMono "129.042593" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:34 -is_a: MOD:00599 -is_a: MOD:00887 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00887 ! methylated aspartic acid [Term] id: MOD:01682 @@ -30462,8 +30465,8 @@ property_value: MassMono "117.024835" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 -is_a: MOD:00599 -is_a: MOD:00660 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00660 ! methylated cysteine [Term] id: MOD:01683 @@ -30482,8 +30485,8 @@ property_value: MassAvg "159.21" xsd:float property_value: MassMono "159.113353" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00599 -is_a: MOD:00663 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00663 ! methylated lysine [Term] id: MOD:01684 @@ -30504,7 +30507,7 @@ property_value: MassMono "341.238850" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:47 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01685 @@ -30521,8 +30524,8 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:47 -is_a: MOD:00651 -is_a: MOD:01696 +is_a: MOD:00651 ! N-palmitoylated residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:01686 @@ -30539,8 +30542,8 @@ property_value: DiffMono "28.031300" xsd:float property_value: Origin "X" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:36 -is_a: MOD:00429 -is_a: MOD:01460 +is_a: MOD:00429 ! dimethylated residue +is_a: MOD:01460 ! alpha-amino methylated residue [Term] id: MOD:01687 @@ -30560,9 +30563,9 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:37 -is_a: MOD:00430 -is_a: MOD:01460 -relationship: derives_from MOD:01700 +is_a: MOD:00430 ! trimethylated residue +is_a: MOD:01460 ! alpha-amino methylated residue +relationship: derives_from MOD:01700 ! alpha-amino protonated residue [Term] id: MOD:01688 @@ -30582,8 +30585,8 @@ property_value: MassMono "130.037842" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 -is_a: MOD:00425 -is_a: MOD:00903 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:01689 @@ -30602,7 +30605,7 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: Unimod:34 -is_a: MOD:00393 +is_a: MOD:00393 ! O-methylated residue [Term] id: MOD:01690 @@ -30622,8 +30625,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0419 -is_a: MOD:00905 -is_a: MOD:01696 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:01691 @@ -30643,8 +30646,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0420 -is_a: MOD:00905 -is_a: MOD:01696 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:01692 @@ -30662,9 +30665,9 @@ property_value: MassAvg "113.12" xsd:float property_value: MassMono "113.047678" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00906 -is_a: MOD:01161 -is_a: MOD:01440 +is_a: MOD:00906 ! modified L-glutamic acid residue +is_a: MOD:01161 ! deoxygenated residue +is_a: MOD:01440 ! glutamyl semialdehyde [Term] id: MOD:01693 @@ -30681,8 +30684,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:25 -is_a: MOD:00418 -is_a: MOD:01696 +is_a: MOD:00418 ! pyridylacetylated residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:01694 @@ -30702,7 +30705,7 @@ property_value: MassMono "524.151826" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0428 -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01695 @@ -30717,8 +30720,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:293 -is_a: MOD:00612 -is_a: MOD:01696 +is_a: MOD:00612 ! 3-(carboxamidomethylthio)propanoylated residue +is_a: MOD:01696 ! alpha-amino acylated residue [Term] id: MOD:01696 @@ -30728,7 +30731,7 @@ subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00670 +is_a: MOD:00670 ! N-acylated residue [Term] id: MOD:01697 @@ -30744,7 +30747,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:276 -is_a: MOD:00596 +is_a: MOD:00596 ! 4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue [Term] id: MOD:01698 @@ -30761,8 +30764,8 @@ property_value: FormalCharge "1+" xsd:string property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00711 -is_a: MOD:01460 +is_a: MOD:00711 ! trimethylated protonated-residue +is_a: MOD:01460 ! alpha-amino methylated residue [Term] id: MOD:01699 @@ -30776,7 +30779,7 @@ property_value: DiffMono "1.007276" xsd:float property_value: FormalCharge "1+" xsd:string property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01700 @@ -30791,7 +30794,7 @@ property_value: FormalCharge "1+" xsd:string property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01699 +is_a: MOD:01699 ! protonated residue [Term] id: MOD:01701 @@ -30805,7 +30808,7 @@ property_value: DiffMono "-1.007276" xsd:float property_value: FormalCharge "1-" xsd:string property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:01702 @@ -30820,7 +30823,7 @@ property_value: FormalCharge "1-" xsd:string property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:01701 +is_a: MOD:01701 ! deprotonated residue [Term] id: MOD:01703 @@ -30839,7 +30842,7 @@ property_value: Formula "C 4 H 5 N 1 O 1" xsd:string property_value: MassAvg "83.09" xsd:float property_value: MassMono "83.037114" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00859 +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01704 @@ -30856,8 +30859,8 @@ property_value: MassAvg "83.09" xsd:float property_value: MassMono "83.037114" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00913 -is_a: MOD:01703 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01703 ! dehydrobutyrine [Term] id: MOD:01705 @@ -30866,7 +30869,7 @@ def: "A protein modification that effectively replaces a residue hydrogen with a subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:01706 @@ -30875,7 +30878,7 @@ def: "A protein modification that effectively replaces a residue alpha-amino- or subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00670 +is_a: MOD:00670 ! N-acylated residue [Term] id: MOD:01707 @@ -30883,7 +30886,7 @@ name: isotope tagged reagent O-acylated residue def: "A protein modification that effectively replaces a residue hydroxyl group with an isotope tagged reagent acyloxy group." [PubMed:18688235] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00671 +is_a: MOD:00671 ! O-acylated residue [Term] id: MOD:01708 @@ -30893,9 +30896,9 @@ subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01696 -is_a: MOD:01705 -is_a: MOD:01706 +is_a: MOD:01696 ! alpha-amino acylated residue +is_a: MOD:01705 ! isotope tagged reagent acylated residue +is_a: MOD:01706 ! isotope tagged reagent N-acylated residue [Term] id: MOD:01709 @@ -30906,7 +30909,7 @@ subset: PSI-MOD-slim synonym: "(4-methylpiperazin-1-yl)acetyl" EXACT PSI-MOD-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01706 +is_a: MOD:01706 ! isotope tagged reagent N-acylated residue [Term] id: MOD:01710 @@ -30916,7 +30919,7 @@ comment: The reagent consists of a reporter group, a balance group and a protein synonym: "(4-methylpiperazin-1-yl)acetyl" EXACT PSI-MOD-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01706 +is_a: MOD:01706 ! isotope tagged reagent N-acylated residue [Term] id: MOD:01711 @@ -30929,8 +30932,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:214 -is_a: MOD:01708 -is_a: MOD:01709 +is_a: MOD:01708 ! isotope tagged reagent alpha-amino acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue [Term] id: MOD:01712 @@ -30943,8 +30946,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:214 -is_a: MOD:01708 -is_a: MOD:01710 +is_a: MOD:01708 ! isotope tagged reagent alpha-amino acylated residue +is_a: MOD:01710 ! iTRAQ8plex reporter+balance reagent N-acylated residue [Term] id: MOD:01713 @@ -30954,7 +30957,7 @@ comment: The reagent consists of a reporter group, a balance group and a protein synonym: "(4-methylpiperazin-1-yl)acetyl" EXACT PSI-MOD-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01707 +is_a: MOD:01707 ! isotope tagged reagent O-acylated residue [Term] id: MOD:01714 @@ -30964,7 +30967,7 @@ comment: The reagent consists of a reporter group, a balance group and a protein synonym: "(4-methylpiperazin-1-yl)acetyl" EXACT PSI-MOD-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01707 +is_a: MOD:01707 ! isotope tagged reagent O-acylated residue [Term] id: MOD:01715 @@ -30981,10 +30984,10 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:214 -is_a: MOD:01426 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01705 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01705 ! isotope tagged reagent acylated residue [Term] id: MOD:01716 @@ -30993,9 +30996,9 @@ def: "The protein modification reporter fragment produced by an Proteome Science subset: PSI-MOD-slim synonym: "2,6-dimethyl-1-methylidenepiperidinium" EXACT PSI-MOD-alternate [] synonym: "cysTMT6plex reporter fragment" EXACT PSI-MOD-alternate [] -is_a: MOD:01520 -relationship: derives_from MOD:01715 -relationship: derives_from MOD:01821 +is_a: MOD:01520 ! modification reporter fragment +relationship: derives_from MOD:01715 ! TMT6plex reporter+balance reagent acylated residue +relationship: derives_from MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01717 @@ -31008,7 +31011,7 @@ synonym: "Sixplex Tandem Mass Tag(TM)" RELATED Unimod-description [] synonym: "TMT6plex" RELATED Unimod-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01706 +is_a: MOD:01706 ! isotope tagged reagent N-acylated residue [Term] id: MOD:01718 @@ -31023,8 +31026,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:214 -is_a: MOD:01708 -is_a: MOD:01717 +is_a: MOD:01708 ! isotope tagged reagent alpha-amino acylated residue +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue [Term] id: MOD:01719 @@ -31036,7 +31039,7 @@ synonym: "Sixplex Tandem Mass Tag(TM)" RELATED Unimod-description [] synonym: "TMT6plex" RELATED Unimod-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01707 +is_a: MOD:01707 ! isotope tagged reagent O-acylated residue [Term] id: MOD:01720 @@ -31053,7 +31056,7 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01715 +is_a: MOD:01715 ! TMT6plex reporter+balance reagent acylated residue [Term] id: MOD:01721 @@ -31071,8 +31074,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:737 -is_a: MOD:01718 -is_a: MOD:01720 +is_a: MOD:01718 ! TMT6plex reporter+balance reagent acylated N-terminal +is_a: MOD:01720 ! TMT6plex-126 reporter+balance reagent acylated residue [Term] id: MOD:01722 @@ -31092,9 +31095,9 @@ property_value: MassMono "357.257895" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01717 -is_a: MOD:01720 -is_a: MOD:01875 +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01720 ! TMT6plex-126 reporter+balance reagent acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01723 @@ -31113,9 +31116,9 @@ property_value: MassMono "392.226261" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:00919 -is_a: MOD:01719 -is_a: MOD:01720 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01720 ! TMT6plex-126 reporter+balance reagent acylated residue [Term] id: MOD:01724 @@ -31133,9 +31136,9 @@ property_value: MassAvg "366.22" xsd:float property_value: MassMono "366.221844" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01717 -is_a: MOD:01720 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01720 ! TMT6plex-126 reporter+balance reagent acylated residue [Term] id: MOD:01725 @@ -31153,9 +31156,9 @@ property_value: MassAvg "316.19" xsd:float property_value: MassMono "316.194961" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01719 -is_a: MOD:01720 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01720 ! TMT6plex-126 reporter+balance reagent acylated residue [Term] id: MOD:01726 @@ -31173,9 +31176,9 @@ property_value: MassAvg "330.21" xsd:float property_value: MassMono "330.210611" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01719 -is_a: MOD:01720 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01720 ! TMT6plex-126 reporter+balance reagent acylated residue [Term] id: MOD:01727 @@ -31192,10 +31195,10 @@ property_value: MassAvg "126.13" xsd:float property_value: MassMono "126.127726" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01716 -relationship: derives_from MOD:01720 -relationship: derives_from MOD:01822 -relationship: derives_from MOD:01823 +is_a: MOD:01716 ! TMT6plex reporter fragment +relationship: derives_from MOD:01720 ! TMT6plex-126 reporter+balance reagent acylated residue +relationship: derives_from MOD:01822 ! cysTMT6plex-zero reporter+balance reagent cysteine disulfide +relationship: derives_from MOD:01823 ! cysTMT6plex-126 reporter+balance reagent cysteine disulfide [Term] id: MOD:01728 @@ -31212,7 +31215,7 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01715 +is_a: MOD:01715 ! TMT6plex reporter+balance reagent acylated residue [Term] id: MOD:01729 @@ -31229,8 +31232,8 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01718 -is_a: MOD:01728 +is_a: MOD:01718 ! TMT6plex reporter+balance reagent acylated N-terminal +is_a: MOD:01728 ! TMT6plex-127 reporter+balance reagent acylated residue [Term] id: MOD:01730 @@ -31250,9 +31253,9 @@ property_value: MassMono "357.257895" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01717 -is_a: MOD:01728 -is_a: MOD:01875 +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01728 ! TMT6plex-127 reporter+balance reagent acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01731 @@ -31270,9 +31273,9 @@ property_value: MassAvg "229.16" xsd:float property_value: MassMono "229.162932" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00919 -is_a: MOD:01719 -is_a: MOD:01728 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01728 ! TMT6plex-127 reporter+balance reagent acylated residue [Term] id: MOD:01732 @@ -31290,9 +31293,9 @@ property_value: MassAvg "366.22" xsd:float property_value: MassMono "366.221844" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01717 -is_a: MOD:01728 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01728 ! TMT6plex-127 reporter+balance reagent acylated residue [Term] id: MOD:01733 @@ -31310,9 +31313,9 @@ property_value: MassAvg "316.19" xsd:float property_value: MassMono "316.194961" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01719 -is_a: MOD:01728 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01728 ! TMT6plex-127 reporter+balance reagent acylated residue [Term] id: MOD:01734 @@ -31330,9 +31333,9 @@ property_value: MassAvg "330.21" xsd:float property_value: MassMono "330.210611" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01719 -is_a: MOD:01728 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01728 ! TMT6plex-127 reporter+balance reagent acylated residue [Term] id: MOD:01735 @@ -31349,9 +31352,9 @@ property_value: MassAvg "127.13" xsd:float property_value: MassMono "127.131081" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01716 -relationship: derives_from MOD:01728 -relationship: derives_from MOD:01824 +is_a: MOD:01716 ! TMT6plex reporter fragment +relationship: derives_from MOD:01728 ! TMT6plex-127 reporter+balance reagent acylated residue +relationship: derives_from MOD:01824 ! cysTMT6plex-127 reporter+balance reagent cysteine disulfide [Term] id: MOD:01736 @@ -31368,7 +31371,7 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01715 +is_a: MOD:01715 ! TMT6plex reporter+balance reagent acylated residue [Term] id: MOD:01737 @@ -31386,8 +31389,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:737 -is_a: MOD:01718 -is_a: MOD:01736 +is_a: MOD:01718 ! TMT6plex reporter+balance reagent acylated N-terminal +is_a: MOD:01736 ! TMT6plex-128 reporter+balance reagent acylated residue [Term] id: MOD:01738 @@ -31407,9 +31410,9 @@ property_value: MassMono "357.257895" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01717 -is_a: MOD:01736 -is_a: MOD:01875 +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01736 ! TMT6plex-128 reporter+balance reagent acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01739 @@ -31428,9 +31431,9 @@ property_value: MassMono "392.226261" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:00919 -is_a: MOD:01719 -is_a: MOD:01736 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01736 ! TMT6plex-128 reporter+balance reagent acylated residue [Term] id: MOD:01740 @@ -31448,9 +31451,9 @@ property_value: MassAvg "366.22" xsd:float property_value: MassMono "366.221844" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01717 -is_a: MOD:01736 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01736 ! TMT6plex-128 reporter+balance reagent acylated residue [Term] id: MOD:01741 @@ -31468,9 +31471,9 @@ property_value: MassAvg "316.19" xsd:float property_value: MassMono "316.194961" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01719 -is_a: MOD:01736 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01736 ! TMT6plex-128 reporter+balance reagent acylated residue [Term] id: MOD:01742 @@ -31488,9 +31491,9 @@ property_value: MassAvg "330.21" xsd:float property_value: MassMono "330.210611" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01719 -is_a: MOD:01736 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01736 ! TMT6plex-128 reporter+balance reagent acylated residue [Term] id: MOD:01743 @@ -31507,9 +31510,9 @@ property_value: MassAvg "128.13" xsd:float property_value: MassMono "128.134436" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01716 -relationship: derives_from MOD:01736 -relationship: derives_from MOD:01825 +is_a: MOD:01716 ! TMT6plex reporter fragment +relationship: derives_from MOD:01736 ! TMT6plex-128 reporter+balance reagent acylated residue +relationship: derives_from MOD:01825 ! cysTMT6plex-128 reporter+balance reagent cysteine disulfide [Term] id: MOD:01744 @@ -31526,7 +31529,7 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01715 +is_a: MOD:01715 ! TMT6plex reporter+balance reagent acylated residue [Term] id: MOD:01745 @@ -31544,8 +31547,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:737 -is_a: MOD:01718 -is_a: MOD:01744 +is_a: MOD:01718 ! TMT6plex reporter+balance reagent acylated N-terminal +is_a: MOD:01744 ! TMT6plex-129 reporter+balance reagent acylated residue [Term] id: MOD:01746 @@ -31565,9 +31568,9 @@ property_value: MassMono "357.257895" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01717 -is_a: MOD:01744 -is_a: MOD:01875 +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01744 ! TMT6plex-129 reporter+balance reagent acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01747 @@ -31586,9 +31589,9 @@ property_value: MassMono "392.226261" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:00919 -is_a: MOD:01719 -is_a: MOD:01744 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01744 ! TMT6plex-129 reporter+balance reagent acylated residue [Term] id: MOD:01748 @@ -31606,9 +31609,9 @@ property_value: MassAvg "366.22" xsd:float property_value: MassMono "366.221844" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01717 -is_a: MOD:01744 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01744 ! TMT6plex-129 reporter+balance reagent acylated residue [Term] id: MOD:01749 @@ -31626,9 +31629,9 @@ property_value: MassAvg "316.19" xsd:float property_value: MassMono "316.194961" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01719 -is_a: MOD:01744 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01744 ! TMT6plex-129 reporter+balance reagent acylated residue [Term] id: MOD:01750 @@ -31646,9 +31649,9 @@ property_value: MassAvg "330.21" xsd:float property_value: MassMono "330.210611" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01719 -is_a: MOD:01744 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01744 ! TMT6plex-129 reporter+balance reagent acylated residue [Term] id: MOD:01751 @@ -31665,9 +31668,9 @@ property_value: MassAvg "129.14" xsd:float property_value: MassMono "129.137790" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01716 -relationship: derives_from MOD:01744 -relationship: derives_from MOD:01826 +is_a: MOD:01716 ! TMT6plex reporter fragment +relationship: derives_from MOD:01744 ! TMT6plex-129 reporter+balance reagent acylated residue +relationship: derives_from MOD:01826 ! cysTMT6plex-129 reporter+balance reagent cysteine disulfide [Term] id: MOD:01752 @@ -31684,8 +31687,8 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01715 -relationship: derives_from MOD:01827 +is_a: MOD:01715 ! TMT6plex reporter+balance reagent acylated residue +relationship: derives_from MOD:01827 ! cysTMT6plex-130 reporter+balance reagent cysteine disulfide [Term] id: MOD:01753 @@ -31703,8 +31706,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:737 -is_a: MOD:01718 -is_a: MOD:01752 +is_a: MOD:01718 ! TMT6plex reporter+balance reagent acylated N-terminal +is_a: MOD:01752 ! TMT6plex-130 reporter+balance reagent acylated residue [Term] id: MOD:01754 @@ -31724,9 +31727,9 @@ property_value: MassMono "357.257895" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01717 -is_a: MOD:01752 -is_a: MOD:01875 +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01752 ! TMT6plex-130 reporter+balance reagent acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01755 @@ -31745,9 +31748,9 @@ property_value: MassMono "392.226261" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:00919 -is_a: MOD:01719 -is_a: MOD:01752 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01752 ! TMT6plex-130 reporter+balance reagent acylated residue [Term] id: MOD:01756 @@ -31765,9 +31768,9 @@ property_value: MassAvg "366.22" xsd:float property_value: MassMono "366.221844" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01717 -is_a: MOD:01752 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01752 ! TMT6plex-130 reporter+balance reagent acylated residue [Term] id: MOD:01757 @@ -31785,9 +31788,9 @@ property_value: MassAvg "316.19" xsd:float property_value: MassMono "316.194961" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01719 -is_a: MOD:01752 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01752 ! TMT6plex-130 reporter+balance reagent acylated residue [Term] id: MOD:01758 @@ -31805,9 +31808,9 @@ property_value: MassAvg "330.21" xsd:float property_value: MassMono "330.210611" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01719 -is_a: MOD:01752 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01752 ! TMT6plex-130 reporter+balance reagent acylated residue [Term] id: MOD:01759 @@ -31824,8 +31827,8 @@ property_value: MassAvg "130.14" xsd:float property_value: MassMono "130.141145" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01716 -relationship: derives_from MOD:01752 +is_a: MOD:01716 ! TMT6plex reporter fragment +relationship: derives_from MOD:01752 ! TMT6plex-130 reporter+balance reagent acylated residue [Term] id: MOD:01760 @@ -31843,8 +31846,8 @@ property_value: DiffMono "229.162932" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01715 -relationship: derives_from MOD:01828 +is_a: MOD:01715 ! TMT6plex reporter+balance reagent acylated residue +relationship: derives_from MOD:01828 ! cysTMT6plex-131 reporter+balance reagent cysteine disulfide [Term] id: MOD:01761 @@ -31862,8 +31865,8 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:737 -is_a: MOD:01718 -is_a: MOD:01760 +is_a: MOD:01718 ! TMT6plex reporter+balance reagent acylated N-terminal +is_a: MOD:01760 ! TMT6plex-131 reporter+balance reagent acylated residue [Term] id: MOD:01762 @@ -31883,9 +31886,9 @@ property_value: MassMono "357.257895" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:01717 -is_a: MOD:01760 -is_a: MOD:01875 +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01760 ! TMT6plex-131 reporter+balance reagent acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01763 @@ -31904,9 +31907,9 @@ property_value: MassMono "392.226261" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:737 -is_a: MOD:00919 -is_a: MOD:01719 -is_a: MOD:01760 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01760 ! TMT6plex-131 reporter+balance reagent acylated residue [Term] id: MOD:01764 @@ -31924,9 +31927,9 @@ property_value: MassAvg "366.22" xsd:float property_value: MassMono "366.221844" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01717 -is_a: MOD:01760 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01717 ! TMT6plex reporter+balance reagent N-acylated residue +is_a: MOD:01760 ! TMT6plex-131 reporter+balance reagent acylated residue [Term] id: MOD:01765 @@ -31944,9 +31947,9 @@ property_value: MassAvg "316.19" xsd:float property_value: MassMono "316.194961" xsd:float property_value: Origin "S" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02003 -is_a: MOD:01719 -is_a: MOD:01760 +is_a: MOD:02003 ! O3-acylated L-serine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01760 ! TMT6plex-131 reporter+balance reagent acylated residue [Term] id: MOD:01766 @@ -31964,9 +31967,9 @@ property_value: MassAvg "330.21" xsd:float property_value: MassMono "330.210611" xsd:float property_value: Origin "T" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02004 -is_a: MOD:01719 -is_a: MOD:01760 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01719 ! TMT6plex reporter+balance reagent O-acylated residue +is_a: MOD:01760 ! TMT6plex-131 reporter+balance reagent acylated residue [Term] id: MOD:01767 @@ -31981,8 +31984,8 @@ property_value: MassAvg "131.14" xsd:float property_value: MassMono "131.138180" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01716 -relationship: derives_from MOD:01760 +is_a: MOD:01716 ! TMT6plex reporter fragment +relationship: derives_from MOD:01760 ! TMT6plex-131 reporter+balance reagent acylated residue [Term] id: MOD:01768 @@ -31994,8 +31997,8 @@ property_value: DiffFormula "C 16 H 28 N 0 O 1" xsd:string property_value: DiffMono "236.214016" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00671 -is_a: MOD:01423 +is_a: MOD:00671 ! O-acylated residue +is_a: MOD:01423 ! palmitoleylated residue [Term] id: MOD:01769 @@ -32018,8 +32021,8 @@ property_value: MassMono "337.261694" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:431 -is_a: MOD:02004 -is_a: MOD:01768 +is_a: MOD:02004 ! O3-acylated L-threonine +is_a: MOD:01768 ! O-palmitoleylated residue [Term] id: MOD:01770 @@ -32036,9 +32039,9 @@ property_value: MassMono "355.296068" xsd:float property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:02004 -relationship: has_functional_parent MOD:00088 -relationship: has_functional_parent MOD:00106 +is_a: MOD:02004 ! O3-acylated L-threonine +relationship: has_functional_parent MOD:00088 ! O-palmitoyl-L-threonine +relationship: has_functional_parent MOD:00106 ! L-threonine amide [Term] id: MOD:01771 @@ -32054,8 +32057,8 @@ property_value: MassAvg "205.36" xsd:float property_value: MassMono "205.195077" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01520 -relationship: derives_from MOD:00437 +is_a: MOD:01520 ! modification reporter fragment +relationship: derives_from MOD:00437 ! farnesylated residue [Term] id: MOD:01772 @@ -32070,8 +32073,8 @@ property_value: MassAvg "239.42" xsd:float property_value: MassMono "239.236942" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01520 -relationship: derives_from MOD:00440 +is_a: MOD:01520 ! modification reporter fragment +relationship: derives_from MOD:00440 ! palmitoylated residue [Term] id: MOD:01773 @@ -32088,9 +32091,9 @@ property_value: MassAvg "112.15" xsd:float property_value: MassMono "112.075690" xsd:float property_value: Origin "MOD:00083" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00431 -is_a: MOD:00912 -relationship: derives_from MOD:00083 +is_a: MOD:00431 ! modified residue with a secondary neutral loss +is_a: MOD:00912 ! modified L-lysine residue +relationship: derives_from MOD:00083 ! N6,N6,N6-trimethyl-L-lysine [Term] id: MOD:01774 @@ -32110,8 +32113,8 @@ property_value: MassAvg "254.37" xsd:float property_value: MassMono "254.199428" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00666 -is_a: MOD:01875 +is_a: MOD:00666 ! octanoylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01775 @@ -32129,7 +32132,7 @@ property_value: MassAvg "287.32" xsd:float property_value: MassMono "287.126991" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00907 +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:01776 @@ -32149,8 +32152,8 @@ property_value: MassAvg "220.31" xsd:float property_value: MassMono "220.034020" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 -is_a: MOD:00905 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01777 @@ -32172,7 +32175,7 @@ property_value: MassMono "177.033388" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00908 +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:01778 @@ -32192,7 +32195,7 @@ property_value: Origin "G" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0433 -is_a: MOD:00908 +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:01779 @@ -32210,7 +32213,7 @@ property_value: MassAvg "256.35" xsd:float property_value: MassMono "256.189926" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01780 @@ -32232,8 +32235,8 @@ property_value: MassMono "272.184841" xsd:float property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0474 -relationship: derives_from MOD:00037 -is_a: MOD:01875 +relationship: derives_from MOD:00037 ! 5-hydroxy-L-lysine +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01781 @@ -32260,8 +32263,8 @@ property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string xref: Unimod:1289 xref: uniprot.ptm:PTM-0637 -is_a: MOD:01875 -is_a: MOD:01997 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:01997 ! N-butanoylated residue [Term] id: MOD:01782 @@ -32281,8 +32284,8 @@ property_value: MassMono "101.047678" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0432 -is_a: MOD:01680 -is_a: MOD:01800 +is_a: MOD:01680 ! alpha-amino monomethylated residue +is_a: MOD:01800 ! N-methylated serine [Term] id: MOD:01783 @@ -32302,8 +32305,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0431 -is_a: MOD:01686 -is_a: MOD:01800 +is_a: MOD:01686 ! alpha-amino dimethylated residue +is_a: MOD:01800 ! N-methylated serine [Term] id: MOD:01784 @@ -32328,8 +32331,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0430 -is_a: MOD:01698 -is_a: MOD:01800 +is_a: MOD:01698 ! alpha-amino trimethylated protonated-residue +is_a: MOD:01800 ! N-methylated serine [Term] id: MOD:01785 @@ -32350,8 +32353,8 @@ property_value: MassAvg "230.22" xsd:float property_value: MassMono "230.090272" xsd:float property_value: Origin "T" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00671 -is_a: MOD:01979 +is_a: MOD:00671 ! O-acylated residue +is_a: MOD:01979 ! O-(L-isoglutamyl)-L-threonine [Term] id: MOD:01786 @@ -32374,7 +32377,7 @@ property_value: MassMono "208.048407" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0434 -is_a: MOD:01352 +is_a: MOD:01352 ! nitrated L-tyrosine [Term] id: MOD:01787 @@ -32396,8 +32399,8 @@ property_value: MassMono "339.121906" xsd:float property_value: Origin "Y, Y" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0320 -is_a: MOD:00692 -is_a: MOD:02058 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:01788 @@ -32415,8 +32418,8 @@ property_value: MassAvg "110.14" xsd:float property_value: MassMono "110.071274" xsd:float property_value: Origin "H" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01527 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01527 ! residue reporter fragment [Term] id: MOD:01789 @@ -32434,8 +32437,8 @@ property_value: MassAvg "120.17" xsd:float property_value: MassMono "120.080776" xsd:float property_value: Origin "F" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00914 -is_a: MOD:01527 +is_a: MOD:00914 ! modified L-phenylalanine residue +is_a: MOD:01527 ! residue reporter fragment [Term] id: MOD:01790 @@ -32453,8 +32456,8 @@ property_value: MassAvg "136.17" xsd:float property_value: MassMono "136.075690" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00919 -is_a: MOD:01527 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01527 ! residue reporter fragment [Term] id: MOD:01791 @@ -32472,9 +32475,9 @@ property_value: MassAvg "190.12" xsd:float property_value: MassMono "190.037604" xsd:float property_value: Origin "MOD:00890" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00909 -is_a: MOD:01527 -relationship: derives_from MOD:00890 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:01527 ! residue reporter fragment +relationship: derives_from MOD:00890 ! phosphorylated L-histidine [Term] id: MOD:01792 @@ -32492,9 +32495,9 @@ property_value: MassAvg "216.15" xsd:float property_value: MassMono "216.042021" xsd:float property_value: Origin "MOD:00048" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00919 -is_a: MOD:01527 -relationship: derives_from MOD:00048 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01527 ! residue reporter fragment +relationship: derives_from MOD:00048 ! O4'-phospho-L-tyrosine [Term] id: MOD:01793 @@ -32510,9 +32513,9 @@ property_value: MassAvg "176.19" xsd:float property_value: MassMono "176.025563" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00708 -is_a: MOD:01854 -relationship: derives_from MOD:01060 +is_a: MOD:00708 ! sulfur oxygenated L-cysteine +is_a: MOD:01854 ! sulfur monooxygenated residue +relationship: derives_from MOD:01060 ! S-carboxamidomethyl-L-cysteine [Term] id: MOD:01794 @@ -32524,8 +32527,8 @@ property_value: DiffFormula "(13)C 1 (1)H -1 (2)H 3" xsd:string property_value: DiffMono "18.037835" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00839 -is_a: MOD:00842 +is_a: MOD:00839 ! (2)H deuterium labeled residue +is_a: MOD:00842 ! (13)C labeled residue [Term] id: MOD:01795 @@ -32540,9 +32543,9 @@ property_value: MassAvg "135.06" xsd:float property_value: MassMono "135.062670" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00839 -is_a: MOD:00842 -is_a: MOD:00913 +is_a: MOD:00839 ! (2)H deuterium labeled residue +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:01796 @@ -32556,8 +32559,8 @@ property_value: MassAvg "151.06" xsd:float property_value: MassMono "151.057585" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00839 -is_a: MOD:00913 +is_a: MOD:00839 ! (2)H deuterium labeled residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:01797 @@ -32575,8 +32578,8 @@ property_value: MassAvg "190.12" xsd:float property_value: MassMono "190.037604" xsd:float property_value: Origin "MOD:00044" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01791 -relationship: derives_from MOD:00044 +is_a: MOD:01791 ! phosphohistidine immonium ion +relationship: derives_from MOD:00044 ! 1'-phospho-L-histidine [Term] id: MOD:01798 @@ -32594,8 +32597,8 @@ property_value: MassAvg "190.12" xsd:float property_value: MassMono "190.037604" xsd:float property_value: Origin "MOD:00045" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01791 -relationship: derives_from MOD:00045 +is_a: MOD:01791 ! phosphohistidine immonium ion +relationship: derives_from MOD:00045 ! 3'-phospho-L-histidine [Term] id: MOD:01799 @@ -32604,8 +32607,8 @@ def: "A protein modification that effectively converts an L-alanine residue to a subset: PSI-MOD-slim synonym: "MeSer" EXACT PSI-MOD-label [] property_value: Origin "S" xsd:string -is_a: MOD:00427 -is_a: MOD:00916 +is_a: MOD:00427 ! methylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01800 @@ -32615,8 +32618,8 @@ subset: PSI-MOD-slim property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01460 -is_a: MOD:01799 +is_a: MOD:01460 ! alpha-amino methylated residue +is_a: MOD:01799 ! methylated serine [Term] id: MOD:01801 @@ -32633,8 +32636,8 @@ property_value: MassMono "89.047130" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00916 -is_a: MOD:01700 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01700 ! alpha-amino protonated residue [Term] id: MOD:01802 @@ -32653,8 +32656,8 @@ property_value: MassMono "131.094080" xsd:float property_value: Origin "MOD:01801" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01687 -relationship: derives_from MOD:01801 +is_a: MOD:01687 ! alpha-amino trimethylated residue +relationship: derives_from MOD:01801 ! protonated L-serine (L-serinium) residue [Term] id: MOD:01803 @@ -32663,15 +32666,15 @@ def: "A protein modification that effectively converts an L-threonine residue to synonym: "OMeThr" EXACT PSI-MOD-label [] property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00393 -is_a: MOD:01418 +is_a: MOD:00393 ! O-methylated residue +is_a: MOD:01418 ! methylated threonine [Term] id: MOD:01804 name: glycosylphosphorylated residue def: "A protein modification that effectively results from forming an adduct with a glycosylphosphate through a phosphodiester bond." [PubMed:18688235] -is_a: MOD:00764 -is_a: MOD:00861 +is_a: MOD:00764 ! glycoconjugated residue +is_a: MOD:00861 ! phosphorus containing modified residue [Term] id: MOD:01805 @@ -32696,9 +32699,9 @@ property_value: Origin "D, G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0490 -is_a: MOD:02043 -is_a: MOD:00954 -is_a: MOD:01928 +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01928 ! N-(L-isoaspartyl)-glycine [Term] id: MOD:01806 @@ -32720,8 +32723,8 @@ property_value: Origin "L" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0435 -is_a: MOD:01686 -is_a: MOD:01808 +is_a: MOD:01686 ! alpha-amino dimethylated residue +is_a: MOD:01808 ! N-methylated leucine [Term] id: MOD:01807 @@ -32741,8 +32744,8 @@ property_value: MassMono "158.045333" xsd:float property_value: Origin "E" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00409 -is_a: MOD:00906 +is_a: MOD:00409 ! N-formylated residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01808 @@ -32751,8 +32754,8 @@ def: "A protein modification that effectively replaces an L-leucine alpha amino subset: PSI-MOD-slim synonym: "MeLeu" EXACT PSI-MOD-label [] property_value: Origin "L" xsd:string -is_a: MOD:00662 -is_a: MOD:01460 +is_a: MOD:00662 ! methylated leucine +is_a: MOD:01460 ! alpha-amino methylated residue [Term] id: MOD:01809 @@ -32766,8 +32769,8 @@ property_value: DiffMono "6.013809" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:268 -is_a: MOD:00842 -is_a: MOD:00843 +is_a: MOD:00842 ! (13)C labeled residue +is_a: MOD:00843 ! (15)N labeled residue [Term] id: MOD:01810 @@ -32784,8 +32787,8 @@ property_value: MassMono "103.066573" xsd:float property_value: Origin "P" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:268 -is_a: MOD:00915 -is_a: MOD:01809 +is_a: MOD:00915 ! modified L-proline residue +is_a: MOD:01809 ! 5x(13)C,1x(15)N labeled residue [Term] id: MOD:01811 @@ -32802,8 +32805,8 @@ property_value: MassMono "137.054294" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:268 -is_a: MOD:00913 -is_a: MOD:01809 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01809 ! 5x(13)C,1x(15)N labeled residue [Term] id: MOD:01812 @@ -32820,8 +32823,8 @@ property_value: MassMono "153.049209" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:268 -relationship: derives_from MOD:00719 -is_a: MOD:01809 +relationship: derives_from MOD:00719 ! L-methionine sulfoxide +is_a: MOD:01809 ! 5x(13)C,1x(15)N labeled residue [Term] id: MOD:01813 @@ -32837,8 +32840,8 @@ property_value: DiffMono "127.063329" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:29 -is_a: MOD:00649 -is_a: MOD:00848 +is_a: MOD:00649 ! acylated residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01814 @@ -32858,9 +32861,9 @@ property_value: MassMono "223.017738" xsd:float property_value: Origin "C, S, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0454 -is_a: MOD:02044 -is_a: MOD:02055 -is_a: MOD:01425 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01425 ! pyridinyl ring crosslinked residues [Term] id: MOD:01815 @@ -32880,9 +32883,9 @@ property_value: MassMono "212.025563" xsd:float property_value: Origin "C, E" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0456 -is_a: MOD:02045 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01816 @@ -32901,7 +32904,7 @@ property_value: MassAvg "202.21" xsd:float property_value: MassMono "202.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01622 +is_a: MOD:01622 ! monohydroxylated tryptophan [Term] id: MOD:01817 @@ -32920,8 +32923,8 @@ property_value: MassAvg "202.21" xsd:float property_value: MassMono "202.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00679 -is_a: MOD:00918 +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:01818 @@ -32943,8 +32946,8 @@ property_value: MassMono "370.142976" xsd:float property_value: Origin "W, W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0544 -is_a: MOD:00692 -is_a: MOD:02057 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02057 ! crosslinked L-tryptophan residue [Term] id: MOD:01819 @@ -32967,8 +32970,8 @@ property_value: MassMono "228.111007" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0438 -is_a: MOD:01029 -is_a: MOD:01875 +is_a: MOD:01029 ! succinylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01820 @@ -32977,8 +32980,8 @@ def: "A protein modification that effectively replaces a cysteine sulhydryl hydr subset: PSI-MOD-slim property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00905 -is_a: MOD:01426 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01821 @@ -32992,9 +32995,9 @@ synonym: "S-(2-{3-[2-(2,6-dimethylpiperidin-1-yl)acetamido]propanamido}ethyl)sul property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:985 -is_a: MOD:01428 -is_a: MOD:01429 -is_a: MOD:01820 +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01429 ! (15)N isotope tagged reagent +is_a: MOD:01820 ! isotope tagged sufhydryl reagent modified cysteine [Term] id: MOD:01822 @@ -33014,7 +33017,7 @@ property_value: MassMono "420.186498" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:984 -is_a: MOD:01821 +is_a: MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01823 @@ -33034,7 +33037,7 @@ property_value: MassMono "425.196952" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:985 -is_a: MOD:01821 +is_a: MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01824 @@ -33053,7 +33056,7 @@ property_value: MassAvg "425.20" xsd:float property_value: MassMono "425.196952" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01821 +is_a: MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01825 @@ -33072,7 +33075,7 @@ property_value: MassAvg "425.20" xsd:float property_value: MassMono "425.196952" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01821 +is_a: MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01826 @@ -33091,7 +33094,7 @@ property_value: MassAvg "425.20" xsd:float property_value: MassMono "425.196952" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01821 +is_a: MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01827 @@ -33110,7 +33113,7 @@ property_value: MassAvg "425.20" xsd:float property_value: MassMono "425.196952" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01821 +is_a: MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01828 @@ -33129,7 +33132,7 @@ property_value: MassAvg "425.20" xsd:float property_value: MassMono "425.196952" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01821 +is_a: MOD:01821 ! cysTMT6plex reporter+balance reagent cysteine disulfide [Term] id: MOD:01829 @@ -33144,10 +33147,10 @@ property_value: MassAvg "161.18" xsd:float property_value: MassMono "161.014664" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00399 -is_a: MOD:00708 -is_a: MOD:01854 -relationship: derives_from MOD:01061 +is_a: MOD:00399 ! iodoacetic acid derivatized residue +is_a: MOD:00708 ! sulfur oxygenated L-cysteine +is_a: MOD:01854 ! sulfur monooxygenated residue +relationship: derives_from MOD:01061 ! S-carboxymethyl-L-cysteine [Term] id: MOD:01830 @@ -33162,9 +33165,9 @@ property_value: MassAvg "177.17" xsd:float property_value: MassMono "177.009579" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00708 -is_a: MOD:01855 -relationship: derives_from MOD:01061 +is_a: MOD:00708 ! sulfur oxygenated L-cysteine +is_a: MOD:01855 ! sulfur dioxygenated residue +relationship: derives_from MOD:01061 ! S-carboxymethyl-L-cysteine [Term] id: MOD:01831 @@ -33180,9 +33183,9 @@ property_value: MassAvg "192.19" xsd:float property_value: MassMono "192.020478" xsd:float property_value: Origin "C" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00708 -is_a: MOD:01855 -relationship: derives_from MOD:01060 +is_a: MOD:00708 ! sulfur oxygenated L-cysteine +is_a: MOD:01855 ! sulfur dioxygenated residue +relationship: derives_from MOD:01060 ! S-carboxamidomethyl-L-cysteine [Term] id: MOD:01832 @@ -33196,7 +33199,7 @@ property_value: DiffMono "5.016774" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:772 -is_a: MOD:00842 +is_a: MOD:00842 ! (13)C labeled residue [Term] id: MOD:01833 @@ -33210,8 +33213,8 @@ property_value: MassAvg "136.06" xsd:float property_value: MassMono "136.057259" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00913 -is_a: MOD:01832 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01832 ! 5x(13)C-labeled residue [Term] id: MOD:01834 @@ -33225,8 +33228,8 @@ property_value: MassAvg "152.05" xsd:float property_value: MassMono "152.052174" xsd:float property_value: Origin "MOD:00719" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:00719 -is_a: MOD:01832 +relationship: derives_from MOD:00719 ! L-methionine sulfoxide +is_a: MOD:01832 ! 5x(13)C-labeled residue [Term] id: MOD:01835 @@ -33240,8 +33243,8 @@ property_value: MassAvg "168.05" xsd:float property_value: MassMono "168.047088" xsd:float property_value: Origin "MOD:00256" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:00256 -is_a: MOD:01832 +relationship: derives_from MOD:00256 ! L-methionine sulfone +is_a: MOD:01832 ! 5x(13)C-labeled residue [Term] id: MOD:01836 @@ -33257,8 +33260,8 @@ property_value: MassAvg "365.34" xsd:float property_value: MassMono "365.122300" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00848 -is_a: MOD:01875 +is_a: MOD:00848 ! reagent derivatized residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01837 @@ -33281,7 +33284,7 @@ property_value: MassAvg "172.20" xsd:float property_value: MassMono "172.030649" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00687 +is_a: MOD:00687 ! thioether crosslinked residues [Term] id: MOD:01838 @@ -33306,7 +33309,7 @@ property_value: MassMono "215.126991" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0439 -is_a: MOD:01853 +is_a: MOD:01853 ! L-lysinoalanine [Term] id: MOD:01839 @@ -33321,9 +33324,9 @@ property_value: MassAvg "172.20" xsd:float property_value: MassMono "172.030649" xsd:float property_value: Origin "C, X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00859 -is_a: MOD:01841 -is_a: MOD:00954 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:01841 ! lanthionine +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01840 @@ -33346,9 +33349,9 @@ property_value: MassMono "113.084064" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0442 -is_a: MOD:00664 -is_a: MOD:00910 -is_a: MOD:00306 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00910 ! modified L-isoleucine residue +is_a: MOD:00306 ! residues isobaric at 113.084064 Da [Term] id: MOD:01841 @@ -33370,8 +33373,8 @@ property_value: MassAvg "172.20" xsd:float property_value: MassMono "172.030649" xsd:float property_value: Origin "C, X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01993 -is_a: MOD:00954 +is_a: MOD:01993 ! beta-carbon thioether crosslinked residues +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01842 @@ -33391,7 +33394,7 @@ property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0443 -is_a: MOD:01851 +is_a: MOD:01851 ! S-(2-aminovinyl)-cysteine [Term] id: MOD:01843 @@ -33409,7 +33412,7 @@ property_value: MassMono "220.040341" xsd:float property_value: Origin "W" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0444 -is_a: MOD:01913 +is_a: MOD:01913 ! monochlorinated L-tryptophan [Term] id: MOD:01844 @@ -33430,9 +33433,9 @@ property_value: Origin "C, L" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0448 -is_a: MOD:02044 -is_a: MOD:02050 -is_a: MOD:01856 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02050 ! crosslinked L-leucine residue +is_a: MOD:01856 ! oxazole/oxazoline ring crosslinked residues (Cys) [Term] id: MOD:01845 @@ -33452,9 +33455,9 @@ property_value: MassMono "196.030649" xsd:float property_value: Origin "C, P" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0449 -is_a: MOD:02044 -is_a: MOD:02054 -is_a: MOD:01856 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02054 ! crosslinked L-proline residue +is_a: MOD:01856 ! oxazole/oxazoline ring crosslinked residues (Cys) [Term] id: MOD:01846 @@ -33473,8 +33476,8 @@ property_value: MassMono "290.859546" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00742 -is_a: MOD:02067 +is_a: MOD:00742 ! copper containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:01847 @@ -33491,8 +33494,8 @@ property_value: MassAvg "215.12" xsd:float property_value: MassMono "214.965345" xsd:float property_value: Origin "C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00708 -is_a: MOD:00861 +is_a: MOD:00708 ! sulfur oxygenated L-cysteine +is_a: MOD:00861 ! phosphorus containing modified residue [Term] id: MOD:01848 @@ -33510,8 +33513,8 @@ property_value: MassAvg "535.68" xsd:float property_value: MassMono "535.224674" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00905 -is_a: MOD:01862 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01862 ! disulfide conjugated residue [Term] id: MOD:01849 @@ -33532,7 +33535,7 @@ property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string xref: uniprot.ptm:PTM-0446 -is_a: MOD:01850 +is_a: MOD:01850 ! S-(2-aminovinyl)-D-cysteine [Term] id: MOD:01850 @@ -33548,7 +33551,7 @@ property_value: MassMono "143.027909" xsd:float property_value: Origin "C, X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:01851 +is_a: MOD:01851 ! S-(2-aminovinyl)-cysteine [Term] id: MOD:01851 @@ -33562,8 +33565,8 @@ property_value: MassMono "143.027909" xsd:float property_value: Origin "C, X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00687 -is_a: MOD:00859 +is_a: MOD:00687 ! thioether crosslinked residues +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01852 @@ -33579,10 +33582,10 @@ property_value: MassAvg "197.24" xsd:float property_value: MassMono "197.116427" xsd:float property_value: Origin "C, K" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00692 -is_a: MOD:02044 -is_a: MOD:02051 -is_a: MOD:01853 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01853 ! L-lysinoalanine [Term] id: MOD:01853 @@ -33590,28 +33593,28 @@ name: L-lysinoalanine def: "A protein modification that effectively converts an L-lysine residue to L-lysinoalanine either by forming a cross-link with peptidyl-cysteine or peptidyl-serine, or by condensation with free serine." [PubMed:18688235] property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -is_a: MOD:00912 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01854 name: sulfur monooxygenated residue def: "A protein modification that effectively adds one oxygen atom to a sulfur atom of a residue without removing hydrogen atoms." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00680 +is_a: MOD:00680 ! sulfur oxygenated residue [Term] id: MOD:01855 name: sulfur dioxygenated residue def: "A protein modification that effectively adds two oxygen atoms to a sulfur atom of a residue without removing hydrogen atoms." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:00680 +is_a: MOD:00680 ! sulfur oxygenated residue [Term] id: MOD:01856 name: oxazole/oxazoline ring crosslinked residues (Cys) def: "A protein modification that crosslinks two residues by rearrangement and condensation of a cysteine with the carbonyl of the preceding residue to form a 1,3-oxazole-4-carbothionic acid." [PubMed:18688235] -is_a: MOD:01419 +is_a: MOD:01419 ! oxazole/oxazoline ring crosslinked residues [Term] id: MOD:01857 @@ -33630,9 +33633,9 @@ property_value: MassMono "232.034020" xsd:float property_value: Origin "C, M" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0495 -is_a: MOD:02044 -is_a: MOD:02052 -is_a: MOD:01992 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02052 ! crosslinked L-methionine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:01858 @@ -33652,9 +33655,9 @@ property_value: MassMono "306.088557" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0628 -is_a: MOD:00426 -is_a: MOD:00448 -is_a: MOD:00905 +is_a: MOD:00426 ! S-glycosylated residue +is_a: MOD:00448 ! mono-N-acetylaminoglucosylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01859 @@ -33678,9 +33681,9 @@ property_value: MassMono "248.061949" xsd:float property_value: Origin "C, F" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0451 -is_a: MOD:02044 -is_a: MOD:02053 -is_a: MOD:01861 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:01861 ! isothiazolidinone ring crosslinked residues [Term] id: MOD:01860 @@ -33699,15 +33702,15 @@ property_value: MassMono "499.093051" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0452 -is_a: MOD:00905 -is_a: MOD:01862 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01862 ! disulfide conjugated residue [Term] id: MOD:01861 name: isothiazolidinone ring crosslinked residues def: "A protein modification that crosslinks two residues by condensation of a cysteine thiol with the amido nitrogen of the following residue to form an isothiazolidinone ring." [PubMed:18688235] comment: The isothiazolidinone ring is usually formed by the reaction of a cysteine sulfenic acid with the amido nitrogen releasing water. -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:01862 @@ -33716,7 +33719,7 @@ def: "A protein modification that effectively replaces the hydrogen atom of a cy subset: PSI-MOD-slim synonym: "S-thiolation" EXACT PSI-MOD-alternate [] property_value: Origin "C" xsd:string -is_a: MOD:01886 +is_a: MOD:01886 ! thiolated residue [Term] id: MOD:01863 @@ -33728,8 +33731,8 @@ synonym: "(4-methylpiperazin-1-yl)acetyl" EXACT PSI-MOD-alternate [] synonym: "Applied Biosystems mTRAQ(TM) reagent" RELATED Unimod-alternate [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01426 -is_a: MOD:01705 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:01705 ! isotope tagged reagent acylated residue [Term] id: MOD:01864 @@ -33746,8 +33749,8 @@ property_value: DiffMono "140.094963" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:888 -is_a: MOD:01863 -is_a: MOD:01868 +is_a: MOD:01863 ! mTRAQ reporter+balance reagent acylated residue +is_a: MOD:01868 ! modifications with monoisotopic mass differences that are nominally equal at 140.094963 Da [Term] id: MOD:01865 @@ -33766,7 +33769,7 @@ property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:888 -is_a: MOD:01864 +is_a: MOD:01864 ! mTRAQ light reporter+balance reagent acylated residue [Term] id: MOD:01866 @@ -33787,8 +33790,8 @@ property_value: MassMono "268.189926" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:888 -is_a: MOD:01864 -is_a: MOD:01875 +is_a: MOD:01864 ! mTRAQ light reporter+balance reagent acylated residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01867 @@ -33808,15 +33811,15 @@ property_value: MassMono "303.158292" xsd:float property_value: Origin "Y" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:888 -is_a: MOD:00919 -is_a: MOD:01864 +is_a: MOD:00919 ! modified L-tyrosine residue +is_a: MOD:01864 ! mTRAQ light reporter+balance reagent acylated residue [Term] id: MOD:01868 name: modifications with monoisotopic mass differences that are nominally equal at 140.094963 Da def: "Modifications that have monoisotopic mass differences from their respective origins of 140.094963 Da." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01515 +is_a: MOD:01515 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.000001 Da [Term] id: MOD:01869 @@ -33830,15 +33833,15 @@ property_value: MassAvg "113.11" xsd:float property_value: MassMono "113.107325" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01870 -relationship: derives_from MOD:01864 +is_a: MOD:01870 ! mTRAQ reporter fragment +relationship: derives_from MOD:01864 ! mTRAQ light reporter+balance reagent acylated residue [Term] id: MOD:01870 name: mTRAQ reporter fragment def: "A protein modification reporter fragment produced by an Applied Biosystems mTRAQ reagent derivatized residue." [PubMed:18688235] subset: PSI-MOD-slim -is_a: MOD:01520 +is_a: MOD:01520 ! modification reporter fragment [Term] id: MOD:01871 @@ -33860,9 +33863,9 @@ property_value: Origin "MOD:01060" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:26 -is_a: MOD:01160 -relationship: contains MOD:00419 -relationship: derives_from MOD:01060 +is_a: MOD:01160 ! deaminated residue +relationship: contains MOD:00419 ! (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid +relationship: derives_from MOD:01060 ! S-carboxamidomethyl-L-cysteine [Term] id: MOD:01872 @@ -33885,9 +33888,9 @@ property_value: Origin "MOD:01061" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:26 -is_a: MOD:00704 -relationship: contains MOD:00419 -relationship: derives_from MOD:01061 +is_a: MOD:00704 ! dehydrated residue +relationship: contains MOD:00419 ! (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid +relationship: derives_from MOD:01061 ! S-carboxymethyl-L-cysteine [Term] id: MOD:01873 @@ -33906,8 +33909,8 @@ property_value: MassMono "116.034768" xsd:float property_value: Origin "A" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00901 -is_a: MOD:01152 +is_a: MOD:00901 ! modified L-alanine residue +is_a: MOD:01152 ! carboxylated residue [Term] id: MOD:01874 @@ -33926,8 +33929,8 @@ property_value: MassMono "144.066068" xsd:float property_value: Origin "V" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00920 -is_a: MOD:01152 +is_a: MOD:00920 ! modified L-valine residue +is_a: MOD:01152 ! carboxylated residue [Term] id: MOD:01875 @@ -33937,8 +33940,8 @@ subset: PSI-MOD-slim synonym: "N6AcylLys" EXACT PSI-MOD-label [] property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:00912 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01876 @@ -33973,9 +33976,9 @@ property_value: Origin "C, R" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0457 -is_a: MOD:02041 -is_a: MOD:02044 -is_a: MOD:01883 +is_a: MOD:02041 ! crosslinked L-arginine residue +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:01883 ! 5-imidazolinone ring crosslinked residues (Cys) [Term] id: MOD:01878 @@ -33995,9 +33998,9 @@ property_value: MassMono "200.025563" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0458 -is_a: MOD:02044 -is_a: MOD:02056 -is_a: MOD:01856 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01856 ! oxazole/oxazoline ring crosslinked residues (Cys) [Term] id: MOD:01879 @@ -34016,8 +34019,8 @@ property_value: MassMono "289.875530" xsd:float property_value: Origin "C, C, R, T" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00742 -is_a: MOD:02067 +is_a: MOD:00742 ! copper containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:01880 @@ -34037,8 +34040,8 @@ property_value: MassMono "199.168462" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0684 -is_a: MOD:00912 -is_a: MOD:01884 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01884 ! 4-aminobutylated residue [Term] id: MOD:01881 @@ -34056,21 +34059,21 @@ property_value: MassAvg "244.29" xsd:float property_value: MassMono "244.121178" xsd:float property_value: Origin "F, V" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00692 -is_a: MOD:02053 -is_a: MOD:02059 +is_a: MOD:00692 ! uncategorized crosslinked residues +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:02059 ! crosslinked L-valine residue [Term] id: MOD:01882 name: 5-imidazolinone ring crosslinked residues (Gly) def: "A protein modification that effectively crosslinks the carbonyl of an amino acid residue at position n with the alpha amino of a glycine residue at position n+2 to form a 5-imidazolinone ring." [PubMed:18688235] -is_a: MOD:00691 +is_a: MOD:00691 ! 5-imidazolinone ring crosslinked residues [Term] id: MOD:01883 name: 5-imidazolinone ring crosslinked residues (Cys) def: "A protein modification that crosslinks two residues by rearrangement and condensation of a cysteine with the carbonyl of the preceding residue to form a 5-imidazolinone ring." [PubMed:18688235] -is_a: MOD:00691 +is_a: MOD:00691 ! 5-imidazolinone ring crosslinked residues [Term] id: MOD:01884 @@ -34078,7 +34081,7 @@ name: 4-aminobutylated residue def: "A protein modification that effectively replaces a hydrogen atom with a 4-aminobutyl group, usually derived from spermidine." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "X" xsd:string -is_a: MOD:00001 +is_a: MOD:00001 ! alkylated residue [Term] id: MOD:01885 @@ -34093,7 +34096,7 @@ property_value: DiffFormula "C 10 H 14 N 2 O 2 S 1" xsd:string property_value: DiffMono "226.077599" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:01886 @@ -34101,7 +34104,7 @@ name: thiolated residue def: "A protein modification that effectively replaces a hydrogen atom with an sulfanyl or substituted sulfanyl group." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "X" xsd:string -is_a: MOD:00860 +is_a: MOD:00860 ! sulfur containing modified residue [Term] id: MOD:01887 @@ -34120,8 +34123,8 @@ property_value: MassAvg "612.67" xsd:float property_value: MassMono "612.134856" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00912 -is_a: MOD:01659 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01659 ! Uniblue A derivatized residue [Term] id: MOD:01888 @@ -34134,7 +34137,7 @@ property_value: DiffFormula "C 0 H -2 N 0 O 0" xsd:string property_value: DiffMono "-2.015650" xsd:float property_value: Origin "X" xsd:string xref: Unimod:401 -is_a: MOD:00683 +is_a: MOD:00683 ! dehydrogenated residue [Term] id: MOD:01889 @@ -34159,8 +34162,8 @@ property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: Unimod:957 xref: uniprot.ptm:PTM-0674 -is_a: MOD:00001 -is_a: MOD:00905 +is_a: MOD:00001 ! alkylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01890 @@ -34178,8 +34181,8 @@ property_value: MassMono "281.107222" xsd:float property_value: Origin "H, MOD:00030" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:02048 -is_a: MOD:02062 +is_a: MOD:02048 ! crosslinked L-histidine residue +is_a: MOD:02062 ! crosslinked N-formyl-L-methionine residue [Term] id: MOD:01891 @@ -34197,8 +34200,8 @@ property_value: MassMono "281.107222" xsd:float property_value: Origin "H, M" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:02048 -is_a: MOD:02052 +is_a: MOD:02048 ! crosslinked L-histidine residue +is_a: MOD:02052 ! crosslinked L-methionine residue [Term] id: MOD:01892 @@ -34223,7 +34226,7 @@ property_value: MassMono "196.121178" xsd:float property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0475 -is_a: MOD:01875 +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01893 @@ -34246,7 +34249,7 @@ property_value: MassMono "214.095357" xsd:float property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0467 -is_a: MOD:01875 +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01894 @@ -34260,7 +34263,7 @@ property_value: DiffMono "56.026215" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:58 -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:01895 @@ -34274,8 +34277,8 @@ property_value: DiffMono "56.026215" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:58 -relationship: derives_from MOD:00451 -is_a: MOD:01426 +relationship: derives_from MOD:00451 ! alpha-amino propanoylated residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:01896 @@ -34288,8 +34291,8 @@ property_value: DiffFormula "C 2 F 3 H 1 O 2" xsd:string property_value: DiffMono "113.992864" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00498 -is_a: MOD:00848 +is_a: MOD:00498 ! fluorinated residue +is_a: MOD:00848 ! reagent derivatized residue [Term] id: MOD:01897 @@ -34310,10 +34313,10 @@ property_value: MassMono "127.063329" xsd:float property_value: Origin "I" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0466 -is_a: MOD:00601 -is_a: MOD:00679 -is_a: MOD:00910 -is_a: MOD:01905 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00679 ! carbon oxygenated residue +is_a: MOD:00910 ! modified L-isoleucine residue +is_a: MOD:01905 ! 5-hydroxy-3-methyl-L-proline [Term] id: MOD:01898 @@ -34335,7 +34338,7 @@ property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0459 -is_a: MOD:00783 +is_a: MOD:00783 ! dimethylated L-arginine [Term] id: MOD:01899 @@ -34354,9 +34357,9 @@ property_value: MassMono "239.084081" xsd:float property_value: Origin "C, R" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0460 -is_a: MOD:02041 -is_a: MOD:01420 -is_a: MOD:02082 +is_a: MOD:02041 ! crosslinked L-arginine residue +is_a: MOD:01420 ! thiazole/thiazoline ring crosslinked residues +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01900 @@ -34376,9 +34379,9 @@ property_value: MassMono "184.030649" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0461 -is_a: MOD:02044 -is_a: MOD:01422 -is_a: MOD:02082 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:01422 ! oxazole/oxazoline ring crosslinked residues (Thr) +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01901 @@ -34398,8 +34401,8 @@ property_value: MassMono "182.069142" xsd:float property_value: Origin "T, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0462 -is_a: MOD:01422 -is_a: MOD:02082 +is_a: MOD:01422 ! oxazole/oxazoline ring crosslinked residues (Thr) +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01902 @@ -34419,9 +34422,9 @@ property_value: MassMono "180.089878" xsd:float property_value: Origin "I, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0463 -is_a: MOD:02049 -is_a: MOD:01421 -is_a: MOD:02082 +is_a: MOD:02049 ! crosslinked L-isoleucine residue +is_a: MOD:01421 ! oxazole/oxazoline ring crosslinked residues (Ser) +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01903 @@ -34441,8 +34444,8 @@ property_value: MassMono "154.037842" xsd:float property_value: Origin "S, S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0464 -is_a: MOD:01421 -is_a: MOD:02082 +is_a: MOD:01421 ! oxazole/oxazoline ring crosslinked residues (Ser) +is_a: MOD:02082 ! didehydrogenated and dehydrated residue [Term] id: MOD:01904 @@ -34463,9 +34466,9 @@ property_value: MassMono "170.069142" xsd:float property_value: Origin "S, T" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0465 -is_a: MOD:02055 -is_a: MOD:01422 -is_a: MOD:00954 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01422 ! oxazole/oxazoline ring crosslinked residues (Thr) +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01905 @@ -34482,8 +34485,8 @@ property_value: MassAvg "127.14" xsd:float property_value: MassMono "127.063329" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -relationship: has_functional_parent MOD:01024 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +relationship: has_functional_parent MOD:01024 ! monohydroxylated proline [Term] id: MOD:01906 @@ -34501,8 +34504,8 @@ property_value: MassMono "131.039936" xsd:float property_value: Origin "M" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00601 -is_a: MOD:00913 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:01907 @@ -34521,9 +34524,9 @@ property_value: MassMono "131.039936" xsd:float property_value: Origin "MOD:001464" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00601 -is_a: MOD:00913 -relationship: derives_from MOD:01464 +is_a: MOD:00601 ! cyclized residue +is_a: MOD:00913 ! modified L-methionine residue +relationship: derives_from MOD:01464 ! protonated L-methionine (L-methioninium) residue [Term] id: MOD:01908 @@ -34538,7 +34541,7 @@ property_value: DiffMono "214.971085" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:261 -is_a: MOD:00584 +is_a: MOD:00584 ! 4-sulfophenyl isothiocyanate derivatized residue [Term] id: MOD:01909 @@ -34552,7 +34555,7 @@ property_value: DiffMono "220.991214" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:464 -is_a: MOD:00880 +is_a: MOD:00880 ! 6x(13)C labeled 4-sulfophenyl isothiocyanate derivatized residue [Term] id: MOD:01910 @@ -34565,7 +34568,7 @@ property_value: DiffMono "17.990578" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:127 -is_a: MOD:00498 +is_a: MOD:00498 ! fluorinated residue [Term] id: MOD:01911 @@ -34578,7 +34581,7 @@ property_value: DiffMono "33.961028" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:936 -is_a: MOD:00753 +is_a: MOD:00753 ! chlorinated residue [Term] id: MOD:01912 @@ -34591,7 +34594,7 @@ property_value: DiffMono "77.910512" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string xref: Unimod:340 -is_a: MOD:00754 +is_a: MOD:00754 ! brominated residue [Term] id: MOD:01913 @@ -34606,8 +34609,8 @@ property_value: MassAvg "220.66" xsd:float property_value: MassMono "220.040341" xsd:float property_value: Origin "W" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01068 -is_a: MOD:01911 +is_a: MOD:01068 ! halogenated tryptophan +is_a: MOD:01911 ! monochlorinated residue [Term] id: MOD:01914 @@ -34628,8 +34631,8 @@ property_value: Origin "MOD:00037" xsd:string property_value: Source "natural" xsd:string xref: Unimod:907 xref: uniprot.ptm:PTM-0556 -is_a: MOD:00476 -is_a: MOD:00396 +is_a: MOD:00476 ! monogalactosylated residue +is_a: MOD:00396 ! O-glycosylated residue [Term] id: MOD:01915 @@ -34648,8 +34651,8 @@ property_value: MassMono "100.039853" xsd:float property_value: Origin "A" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00409 -is_a: MOD:00901 +is_a: MOD:00409 ! N-formylated residue +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:01916 @@ -34670,8 +34673,8 @@ property_value: MassMono "366.142701" xsd:float property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0570 -is_a: MOD:00563 -is_a: MOD:01927 +is_a: MOD:00563 ! mono-N-acetylaminogalactosylated residue +is_a: MOD:01927 ! O-glycosyl-L-tyrosine [Term] id: MOD:01917 @@ -34694,9 +34697,9 @@ property_value: MassMono "225.111341" xsd:float property_value: Origin "D, K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0486 -is_a: MOD:02043 -is_a: MOD:01929 -is_a: MOD:00954 +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:01929 ! N6-(L-isoaspartyl)-L-lysine +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01918 @@ -34720,7 +34723,7 @@ property_value: MassMono "144.089878" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0472 -is_a: MOD:00037 +is_a: MOD:00037 ! 5-hydroxy-L-lysine [Term] id: MOD:01919 @@ -34745,7 +34748,7 @@ property_value: MassMono "131.021858" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0473 -is_a: MOD:01926 +is_a: MOD:01926 ! 3-hydroxy-L-aspartic acid [Term] id: MOD:01920 @@ -34763,8 +34766,8 @@ property_value: MassMono "153.053826" xsd:float property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0477 -is_a: MOD:00909 -is_a: MOD:00677 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:00677 ! hydroxylated residue [Term] id: MOD:01921 @@ -34782,8 +34785,8 @@ property_value: MassAvg "115.09" xsd:float property_value: MassMono "115.026943" xsd:float property_value: Origin "D" xsd:string property_value: Source "artifactual" xsd:string -is_a: MOD:00904 -is_a: MOD:01942 +is_a: MOD:00904 ! modified L-aspartic acid residue +is_a: MOD:01942 ! D-aspartic acid [Term] id: MOD:01922 @@ -34800,8 +34803,8 @@ property_value: MassAvg "99.09" xsd:float property_value: MassMono "99.032028" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00916 -relationship: has_functional_parent MOD:00189 +is_a: MOD:00916 ! modified L-serine residue +relationship: has_functional_parent MOD:00189 ! dehydroalanine (Ser) [Term] id: MOD:01923 @@ -34823,10 +34826,10 @@ property_value: MassMono "242.114081" xsd:float property_value: Origin "D, K" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00688 -is_a: MOD:02043 -is_a: MOD:00954 -is_a: MOD:01875 +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01924 @@ -34845,9 +34848,9 @@ property_value: MassAvg "229.34" xsd:float property_value: MassMono "229.113650" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00666 -is_a: MOD:00672 -is_a: MOD:00905 +is_a: MOD:00666 ! octanoylated residue +is_a: MOD:00672 ! S-acylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01925 @@ -34872,7 +34875,7 @@ property_value: MassMono "144.089878" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0471 -is_a: MOD:00037 +is_a: MOD:00037 ! 5-hydroxy-L-lysine [Term] id: MOD:01926 @@ -34895,8 +34898,8 @@ property_value: MassMono "131.021858" xsd:float property_value: Origin "D" xsd:string property_value: Source "natural" xsd:string xref: Unimod:35 -is_a: MOD:00425 -is_a: MOD:00904 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:01927 @@ -34906,8 +34909,8 @@ subset: PSI-MOD-slim synonym: "OGlycoTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00396 -is_a: MOD:00919 +is_a: MOD:00396 ! O-glycosylated residue +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:01928 @@ -34927,8 +34930,8 @@ property_value: MassMono "155.045667" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00688 -is_a: MOD:02047 +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:02047 ! crosslinked glycine residue [Term] id: MOD:01929 @@ -34948,8 +34951,8 @@ property_value: MassAvg "225.25" xsd:float property_value: MassMono "225.111341" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00688 -is_a: MOD:01875 +is_a: MOD:00688 ! isopeptide crosslinked residues +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01930 @@ -34967,8 +34970,8 @@ property_value: MassAvg "115.09" xsd:float property_value: MassMono "115.026943" xsd:float property_value: Origin "N" xsd:string property_value: Source "artifactual" xsd:string -is_a: MOD:00903 -is_a: MOD:01942 +is_a: MOD:00903 ! modified L-asparagine residue +is_a: MOD:01942 ! D-aspartic acid [Term] id: MOD:01931 @@ -34991,8 +34994,8 @@ property_value: MassAvg "208.15" xsd:float property_value: MassMono "208.061294" xsd:float property_value: Origin "K" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00912 -is_a: MOD:01456 +is_a: MOD:00912 ! modified L-lysine residue +is_a: MOD:01456 ! N-phosphorylated residue [Term] id: MOD:01932 @@ -35015,8 +35018,8 @@ property_value: MassAvg "239.32" xsd:float property_value: MassMono "239.163377" xsd:float property_value: Origin "K, K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02051 -is_a: MOD:00946 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia [Term] id: MOD:01933 @@ -35035,8 +35038,8 @@ property_value: MassAvg "454.55" xsd:float property_value: MassMono "454.244881" xsd:float property_value: Origin "K, K, K, K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02051 -is_a: MOD:01425 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01425 ! pyridinyl ring crosslinked residues [Term] id: MOD:01934 @@ -35055,8 +35058,8 @@ property_value: MassAvg "454.55" xsd:float property_value: MassMono "454.244881" xsd:float property_value: Origin "K, K, K, K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02051 -is_a: MOD:01425 +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01425 ! pyridinyl ring crosslinked residues [Term] id: MOD:01935 @@ -35074,9 +35077,9 @@ property_value: MassMono "306.142701" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0572 -relationship: derives_from MOD:01047 -is_a: MOD:00396 -is_a: MOD:00912 +relationship: derives_from MOD:01047 ! monohydroxylated lysine +is_a: MOD:00396 ! O-glycosylated residue +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:01936 @@ -35093,8 +35096,8 @@ property_value: MassAvg "392.63" xsd:float property_value: MassMono "392.340279" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 -is_a: MOD:02011 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:02011 ! N-oleoylated residue [Term] id: MOD:01937 @@ -35114,8 +35117,8 @@ property_value: MassMono "370.277976" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00913 -is_a: MOD:01685 +is_a: MOD:00913 ! modified L-methionine residue +is_a: MOD:01685 ! alpha-amino palmitoylated residue [Term] id: MOD:01938 @@ -35133,9 +35136,9 @@ property_value: MassAvg "200.21" xsd:float property_value: MassMono "200.025563" xsd:float property_value: Origin "C, N" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02042 -is_a: MOD:01945 -is_a: MOD:00946 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:01945 ! 2-(2-aminosuccinimidyl)-3-sulfanylpropanoic acid +is_a: MOD:00946 ! crosslinked residues with loss of ammonia [Term] id: MOD:01939 @@ -35153,9 +35156,9 @@ property_value: MassAvg "200.21" xsd:float property_value: MassMono "200.025563" xsd:float property_value: Origin "C, D" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02043 -is_a: MOD:01945 -is_a: MOD:00954 +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:01945 ! 2-(2-aminosuccinimidyl)-3-sulfanylpropanoic acid +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01940 @@ -35173,9 +35176,9 @@ property_value: MassAvg "226.19" xsd:float property_value: MassMono "226.058971" xsd:float property_value: Origin "E, N" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02042 -is_a: MOD:01946 -is_a: MOD:00946 +is_a: MOD:02042 ! crosslinked L-asparagine residue +is_a: MOD:01946 ! 2-(2-aminosuccinimidyl)pentanedioic acid +is_a: MOD:00946 ! crosslinked residues with loss of ammonia [Term] id: MOD:01941 @@ -35193,9 +35196,9 @@ property_value: MassAvg "226.19" xsd:float property_value: MassMono "226.058971" xsd:float property_value: Origin "D, E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02043 -is_a: MOD:01946 -is_a: MOD:00954 +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:01946 ! 2-(2-aminosuccinimidyl)pentanedioic acid +is_a: MOD:00954 ! crosslinked residues with loss of water [Term] id: MOD:01942 @@ -35210,14 +35213,14 @@ property_value: MassAvg "115.09" xsd:float property_value: MassMono "115.026943" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifactual" xsd:string -is_a: MOD:00664 -is_a: MOD:00859 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01943 name: pyrrolidione ring crosslinked residues def: "A protein modification that crosslinks two adjacent residues by formation of a pyrrolidione ring." [PubMed:18688235] -is_a: MOD:00033 +is_a: MOD:00033 ! crosslinked residues [Term] id: MOD:01944 @@ -35227,8 +35230,8 @@ comment: Cross-link 2; this cross-link is formed by the condensation of an aspar subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00033 -is_a: MOD:00859 +is_a: MOD:00033 ! crosslinked residues +is_a: MOD:00859 ! modified residue that can arise from different natural residues [Term] id: MOD:01945 @@ -35240,8 +35243,8 @@ property_value: MassAvg "154.13" xsd:float property_value: MassMono "154.037842" xsd:float property_value: Origin "C, X" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:02044 -is_a: MOD:01944 +is_a: MOD:02044 ! crosslinked L-cysteine residue +is_a: MOD:01944 ! 2-aminosuccinimide ring crosslinked residues [Term] id: MOD:01946 @@ -35253,8 +35256,8 @@ property_value: MassAvg "154.13" xsd:float property_value: MassMono "154.037842" xsd:float property_value: Origin "E, X" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:02045 -is_a: MOD:01944 +is_a: MOD:02045 ! crosslinked L-glutamic acid residue +is_a: MOD:01944 ! 2-aminosuccinimide ring crosslinked residues [Term] id: MOD:01947 @@ -35275,10 +35278,10 @@ property_value: MassAvg "198.18" xsd:float property_value: MassMono "198.064057" xsd:float property_value: Origin "D, T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00885 -is_a: MOD:02043 -is_a: MOD:00954 -is_a: MOD:01978 +is_a: MOD:00885 ! ester crosslinked residues +is_a: MOD:02043 ! crosslinked L-aspartic acid residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01978 ! O-(L-isoaspartyl)-L-threonine [Term] id: MOD:01948 @@ -35297,8 +35300,8 @@ property_value: MassAvg "241.26" xsd:float property_value: MassMono "241.052112" xsd:float property_value: Origin "C, S, S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02055 -is_a: MOD:01993 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01993 ! beta-carbon thioether crosslinked residues [Term] id: MOD:01949 @@ -35317,9 +35320,9 @@ property_value: MassMono "423.158292" xsd:float property_value: Origin "F, Y, Y" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00033 -is_a: MOD:02053 -is_a: MOD:02058 +is_a: MOD:00033 ! crosslinked residues +is_a: MOD:02053 ! crosslinked L-phenylalanine residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue [Term] id: MOD:01950 @@ -35337,7 +35340,7 @@ property_value: MassMono "222.111676" xsd:float property_value: Origin "Q" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0488 -is_a: MOD:00907 +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:01951 @@ -35356,9 +35359,9 @@ property_value: MassAvg "198.18" xsd:float property_value: MassMono "198.064057" xsd:float property_value: Origin "Q, S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02046 -is_a: MOD:00946 -is_a: MOD:01977 +is_a: MOD:02046 ! crosslinked L-glutamine residue +is_a: MOD:00946 ! crosslinked residues with loss of ammonia +is_a: MOD:01977 ! O-(L-isoglutamyl)-L-serine [Term] id: MOD:01952 @@ -35379,11 +35382,11 @@ property_value: MassAvg "212.20" xsd:float property_value: MassMono "212.079707" xsd:float property_value: Origin "Q, T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02046 -is_a: MOD:02056 -is_a: MOD:01979 -is_a: MOD:00885 -is_a: MOD:00946 +is_a: MOD:02046 ! crosslinked L-glutamine residue +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01979 ! O-(L-isoglutamyl)-L-threonine +is_a: MOD:00885 ! ester crosslinked residues +is_a: MOD:00946 ! crosslinked residues with loss of ammonia [Term] id: MOD:01953 @@ -35398,8 +35401,8 @@ property_value: MassAvg "871.95" xsd:float property_value: MassMono "871.729098" xsd:float property_value: Origin "C, C, C, C" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00738 -is_a: MOD:02067 +is_a: MOD:00738 ! iron containing modified residue +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:01954 @@ -35420,8 +35423,8 @@ property_value: MassAvg "69.06" xsd:float property_value: MassMono "69.021464" xsd:float property_value: Origin "U" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01158 -is_a: MOD:01168 +is_a: MOD:01158 ! modified L-selenocysteine residue +is_a: MOD:01168 ! dehydroalanine [Term] id: MOD:01955 @@ -35441,12 +35444,12 @@ property_value: MassMono "1175.922825" xsd:float property_value: Origin "A, D, D, E, E, E, H" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "C-term" xsd:string -is_a: MOD:00740 -is_a: MOD:01482 -is_a: MOD:02065 -is_a: MOD:02066 -is_a: MOD:02068 -is_a: MOD:02070 +is_a: MOD:00740 ! manganese containing modified residue +is_a: MOD:01482 ! calcium containing modified residue +is_a: MOD:02065 ! metal or metal cluster coordinated L-alanine residue +is_a: MOD:02066 ! metal or metal cluster coordinated L-aspartic acid residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue +is_a: MOD:02070 ! metal or metal cluster coordinated L-histidine residue [Term] id: MOD:01956 @@ -35469,7 +35472,7 @@ property_value: MassMono "172.096026" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0476 -is_a: MOD:00682 +is_a: MOD:00682 ! hydroxylated arginine [Term] id: MOD:01957 @@ -35489,7 +35492,7 @@ property_value: MassMono "113.047678" xsd:float property_value: Origin "P" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0668 -is_a: MOD:01024 +is_a: MOD:01024 ! monohydroxylated proline [Term] id: MOD:01958 @@ -35508,8 +35511,8 @@ property_value: MassAvg "992.70" xsd:float property_value: MassMono "991.968699" xsd:float property_value: Origin "C, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue [Term] id: MOD:01959 @@ -35526,9 +35529,9 @@ property_value: MassAvg "786.12" xsd:float property_value: MassMono "785.666881" xsd:float property_value: Origin "C, C, C, E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02068 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02068 ! metal or metal cluster coordinated L-glutamic acid residue [Term] id: MOD:01960 @@ -35546,9 +35549,9 @@ property_value: MassAvg "785.14" xsd:float property_value: MassMono "784.682866" xsd:float property_value: Origin "C, C, C, Q" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00739 -is_a: MOD:02067 -is_a: MOD:02069 +is_a: MOD:00739 ! iron-sulfur cluster containing modification +is_a: MOD:02067 ! metal or metal cluster coordinated L-cysteine residue +is_a: MOD:02069 ! metal or metal cluster coordinated L-glutamine residue [Term] id: MOD:01961 @@ -35593,7 +35596,7 @@ property_value: MassMono "342.153934" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0506 -is_a: MOD:00160 +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:01963 @@ -35617,7 +35620,7 @@ property_value: MassMono "315.143035" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0548 -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:01964 @@ -35638,7 +35641,7 @@ property_value: MassMono "361.148515" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0549 -is_a: MOD:00002 +is_a: MOD:00002 ! O-glycosyl-L-serine [Term] id: MOD:01965 @@ -35654,9 +35657,9 @@ property_value: MassAvg "175.13" xsd:float property_value: MassMono "175.131068" xsd:float property_value: Origin "K" xsd:string property_value: Source "artifact" xsd:string -relationship: derives_from MOD:00064 -is_a: MOD:01428 -is_a: MOD:01431 +relationship: derives_from MOD:00064 ! N6-acetyl-L-lysine +is_a: MOD:01428 ! (13)C isotope tagged reagent +is_a: MOD:01431 ! (2)H deuterium tagged reagent [Term] id: MOD:01966 @@ -35702,8 +35705,8 @@ property_value: MassMono "359.180484" xsd:float property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0518 -is_a: MOD:00448 -is_a: MOD:01980 +is_a: MOD:00448 ! mono-N-acetylaminoglucosylated residue +is_a: MOD:01980 ! omega-N-glycosyl-L-arginine [Term] id: MOD:01968 @@ -35726,7 +35729,7 @@ property_value: MassAvg "186.23" xsd:float property_value: MassMono "186.046299" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01981 +is_a: MOD:01981 ! 3-methyllanthionine [Term] id: MOD:01969 @@ -35744,8 +35747,8 @@ property_value: MassAvg "392.44" xsd:float property_value: MassMono "392.082426" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00860 -is_a: MOD:00905 +is_a: MOD:00860 ! sulfur containing modified residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01970 @@ -35773,7 +35776,7 @@ property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string xref: Unimod:450 xref: uniprot.ptm:PTM-0479 -is_a: MOD:00207 +is_a: MOD:00207 ! L-isoglutamyl-polyglutamic acid [Term] id: MOD:01971 @@ -35797,7 +35800,7 @@ property_value: MassMono "243.121906" xsd:float property_value: Origin "E" xsd:string property_value: Source "hypothetical" xsd:string xref: uniprot.ptm:PTM-0478 -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01972 @@ -35816,9 +35819,9 @@ property_value: MassAvg "878.63" xsd:float property_value: MassMono "878.147237" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00860 -is_a: MOD:00861 -is_a: MOD:00906 +is_a: MOD:00860 ! sulfur containing modified residue +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:01973 @@ -35836,8 +35839,8 @@ property_value: MassAvg "296.22" xsd:float property_value: MassMono "296.077338" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00861 -is_a: MOD:01875 +is_a: MOD:00861 ! phosphorus containing modified residue +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:01974 @@ -35860,7 +35863,7 @@ property_value: MassMono "146.063411" xsd:float property_value: Origin "M" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0636 -is_a: MOD:00716 +is_a: MOD:00716 ! methylated methionine [Term] id: MOD:01975 @@ -35878,8 +35881,8 @@ synonym: "MOD_RES S-poly(beta-hydroxybutyryl)lysine" EXACT UniProt-feature [] property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0641 -is_a: MOD:00672 -is_a: MOD:00905 +is_a: MOD:00672 ! S-acylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:01976 @@ -35898,8 +35901,8 @@ synonym: "MOD_RES O3-poly(beta-hydroxybutyryl)lysine" EXACT UniProt-feature [] property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0640 -is_a: MOD:00671 -is_a: MOD:00916 +is_a: MOD:00671 ! O-acylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:01977 @@ -35915,9 +35918,9 @@ property_value: MassAvg "198.18" xsd:float property_value: MassMono "198.064057" xsd:float property_value: Origin "S, X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -is_a: MOD:00885 -is_a: MOD:02055 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:00885 ! ester crosslinked residues +is_a: MOD:02055 ! crosslinked L-serine residue [Term] id: MOD:01978 @@ -35934,8 +35937,8 @@ property_value: MassAvg "216.19" xsd:float property_value: MassMono "216.074621" xsd:float property_value: Origin "T, X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00859 -is_a: MOD:02056 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:02056 ! crosslinked L-threonine residue [Term] id: MOD:01979 @@ -35953,8 +35956,8 @@ property_value: MassAvg "230.22" xsd:float property_value: MassMono "230.090272" xsd:float property_value: Origin "T, X" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:00859 -is_a: MOD:02056 +is_a: MOD:00859 ! modified residue that can arise from different natural residues +is_a: MOD:02056 ! crosslinked L-threonine residue [Term] id: MOD:01980 @@ -35970,8 +35973,8 @@ synonym: "omega-N-glycosyl-L-arginine" EXACT RESID-alternate [] property_value: Origin "R" xsd:string property_value: Source "natural" xsd:string xref: Unimod:41 -is_a: MOD:00006 -is_a: MOD:00902 +is_a: MOD:00006 ! N-glycosylated residue +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:01981 @@ -35992,9 +35995,9 @@ property_value: MassAvg "186.23" xsd:float property_value: MassMono "186.046299" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02056 -is_a: MOD:00954 -is_a: MOD:01993 +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:00954 ! crosslinked residues with loss of water +is_a: MOD:01993 ! beta-carbon thioether crosslinked residues [Term] id: MOD:01982 @@ -36023,8 +36026,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0485 -is_a: MOD:00714 -is_a: MOD:01698 +is_a: MOD:00714 ! methylated glycine +is_a: MOD:01698 ! alpha-amino trimethylated protonated-residue [Term] id: MOD:01983 @@ -36045,8 +36048,8 @@ property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: uniprot.ptm:PTM-0484 -is_a: MOD:00714 -is_a: MOD:01686 +is_a: MOD:00714 ! methylated glycine +is_a: MOD:01686 ! alpha-amino dimethylated residue [Term] id: MOD:01984 @@ -36064,8 +36067,8 @@ property_value: MassAvg "172.20" xsd:float property_value: MassMono "172.030649" xsd:float property_value: Origin "A, C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02040 -is_a: MOD:01992 +is_a: MOD:02040 ! crosslinked L-alanine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:01985 @@ -36082,9 +36085,9 @@ property_value: MassAvg "215.23" xsd:float property_value: MassMono "215.036462" xsd:float property_value: Origin "C, N" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00664 -is_a: MOD:02060 -is_a: MOD:01992 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:02060 ! crosslinked D-asparagine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:01986 @@ -36101,8 +36104,8 @@ property_value: MassAvg "188.20" xsd:float property_value: MassMono "188.025563" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02055 -is_a: MOD:01992 +is_a: MOD:02055 ! crosslinked L-serine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:01987 @@ -36119,9 +36122,9 @@ property_value: MassAvg "188.20" xsd:float property_value: MassMono "188.025563" xsd:float property_value: Origin "C, S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00664 -is_a: MOD:02064 -is_a: MOD:01992 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:02064 ! crosslinked D-serine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:01988 @@ -36139,8 +36142,8 @@ property_value: MassAvg "202.23" xsd:float property_value: MassMono "202.041213" xsd:float property_value: Origin "C, T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02056 -is_a: MOD:01992 +is_a: MOD:02056 ! crosslinked L-threonine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:01989 @@ -36158,9 +36161,9 @@ property_value: MassAvg "264.30" xsd:float property_value: MassMono "264.056863" xsd:float property_value: Origin "C, Y" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00664 -is_a: MOD:02058 -is_a: MOD:01992 +is_a: MOD:00664 ! stereoisomerized residue +is_a: MOD:02058 ! crosslinked L-tyrosine residue +is_a: MOD:01992 ! alpha-carbon thioether crosslinked residues [Term] id: MOD:01990 @@ -36177,8 +36180,8 @@ property_value: MassMono "59.036565" xsd:float property_value: Origin "G" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:00908 -is_a: MOD:01700 +is_a: MOD:00908 ! modified glycine residue +is_a: MOD:01700 ! alpha-amino protonated residue [Term] id: MOD:01991 @@ -36197,21 +36200,21 @@ property_value: MassMono "101.083515" xsd:float property_value: Origin "MOD:01990" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01687 -relationship: derives_from MOD:01990 +is_a: MOD:01687 ! alpha-amino trimethylated residue +relationship: derives_from MOD:01990 ! protonated glycine (glycinium) residue [Term] id: MOD:01992 name: alpha-carbon thioether crosslinked residues def: "A protein modification that crosslinks two residues by formation of a thioether bond between a cysteine thiol and the alpha-carbon of another amino acid residue." [PubMed:18688235] -is_a: MOD:00687 +is_a: MOD:00687 ! thioether crosslinked residues [Term] id: MOD:01993 name: beta-carbon thioether crosslinked residues def: "A protein modification that crosslinks two residues by formation of a thioether bond between a cysteine thiol and the beta-carbon of another amino acid residue." [PubMed:18688235] comment: These are typical lanthionine-like crosslinks. -is_a: MOD:00687 +is_a: MOD:00687 ! thioether crosslinked residues [Term] id: MOD:01994 @@ -36227,7 +36230,7 @@ property_value: MassAvg "214.22" xsd:float property_value: MassMono "214.074228" xsd:float property_value: Origin "W" xsd:string property_value: Source "hypothetical" xsd:string -is_a: MOD:01106 +is_a: MOD:01106 ! N-formyl-L-tryptophan [Term] id: MOD:01995 @@ -36244,7 +36247,7 @@ property_value: MassMono "215.082053" xsd:float property_value: Origin "W" xsd:string property_value: Source "hypothetical" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01106 +is_a: MOD:01106 ! N-formyl-L-tryptophan [Term] id: MOD:01996 @@ -36258,7 +36261,7 @@ property_value: DiffAvg "70.09" xsd:float property_value: DiffFormula "C 4 H 6 O 1" xsd:string property_value: DiffMono "70.041865" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:01997 @@ -36273,7 +36276,7 @@ property_value: DiffAvg "70.09" xsd:float property_value: DiffFormula "C 4 H 6 N 0 O 1" xsd:string property_value: DiffMono "70.041865" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:01996 +is_a: MOD:01996 ! butanoylated residue [Term] id: MOD:01998 @@ -36286,7 +36289,7 @@ property_value: DiffMono "70.041865" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string property_value: TermSpec "N-term" xsd:string -is_a: MOD:01997 +is_a: MOD:01997 ! N-butanoylated residue [Term] id: MOD:01999 @@ -36301,7 +36304,7 @@ property_value: MassAvg "394.60" xsd:float property_value: MassMono "394.298414" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02000 +is_a: MOD:02000 ! N6-retinylidene-L-lysine (unspecified geometric isomer) [Term] id: MOD:02000 @@ -36316,7 +36319,7 @@ property_value: MassAvg "394.60" xsd:float property_value: MassMono "394.298414" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:02001 @@ -36328,8 +36331,8 @@ property_value: DiffFormula "C 18 H 34 O 1" xsd:string property_value: DiffMono "266.260966" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:02002 @@ -36341,8 +36344,8 @@ property_value: DiffFormula "C 16 H 28 N 0 O 1" xsd:string property_value: DiffMono "236.214016" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00672 -is_a: MOD:01423 +is_a: MOD:00672 ! S-acylated residue +is_a: MOD:01423 ! palmitoleylated residue [Term] id: MOD:02003 @@ -36351,8 +36354,8 @@ def: "A protein modification that effectively replaces an O3-hydroxy hydrogen at subset: PSI-MOD-slim property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00671 -is_a: MOD:00916 +is_a: MOD:00671 ! O-acylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:02004 @@ -36361,8 +36364,8 @@ def: "A protein modification that effectively replaces an O3-hydroxy hydrogen at subset: PSI-MOD-slim property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00671 -is_a: MOD:00917 +is_a: MOD:00671 ! O-acylated residue +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:02005 @@ -36371,8 +36374,8 @@ def: "A protein modification that effectively replaces an sulfanyl hydrogen atom subset: PSI-MOD-slim property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00672 -is_a: MOD:00905 +is_a: MOD:00672 ! S-acylated residue +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:02006 @@ -36384,8 +36387,8 @@ property_value: DiffFormula "C 18 H 34 O 1" xsd:string property_value: DiffMono "266.260966" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00672 -is_a: MOD:02001 +is_a: MOD:00672 ! S-acylated residue +is_a: MOD:02001 ! stearoylated residue [Term] id: MOD:02007 @@ -36400,8 +36403,8 @@ property_value: MassAvg "364.58" xsd:float property_value: MassMono "364.308979" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 -is_a: MOD:02008 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:02008 ! N-palmitoleylated residue [Term] id: MOD:02008 @@ -36413,8 +36416,8 @@ property_value: DiffFormula "C 16 H 28 N 0 O 1" xsd:string property_value: DiffMono "236.214016" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:01423 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:01423 ! palmitoleylated residue [Term] id: MOD:02009 @@ -36429,8 +36432,8 @@ property_value: MassAvg "394.65" xsd:float property_value: MassMono "394.355929" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 -is_a: MOD:02010 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:02010 ! N-stearoylated residue [Term] id: MOD:02010 @@ -36442,8 +36445,8 @@ property_value: DiffFormula "C 18 H 34 O 1" xsd:string property_value: DiffMono "266.260966" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:02001 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:02001 ! stearoylated residue [Term] id: MOD:02011 @@ -36455,8 +36458,8 @@ property_value: DiffFormula "C 18 H 32 N 0 O 1" xsd:string property_value: DiffMono "264.245316" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:02012 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:02012 ! oleoylated residue [Term] id: MOD:02012 @@ -36468,8 +36471,8 @@ property_value: DiffFormula "C 18 H 32 N 0 O 1" xsd:string property_value: DiffMono "264.245316" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:02013 @@ -36484,8 +36487,8 @@ property_value: MassAvg "390.63" xsd:float property_value: MassMono "390.324629" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 -is_a: MOD:02014 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:02014 ! N-linoloylated residue [Term] id: MOD:02014 @@ -36497,8 +36500,8 @@ property_value: DiffFormula "C 18 H 30 N 0 O 1" xsd:string property_value: DiffMono "262.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:02015 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:02015 ! linoloylated residue [Term] id: MOD:02015 @@ -36510,8 +36513,8 @@ property_value: DiffFormula "C 18 H 30 N 0 O 1" xsd:string property_value: DiffMono "262.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:02016 @@ -36526,8 +36529,8 @@ property_value: MassAvg "414.67" xsd:float property_value: MassMono "414.324629" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 -is_a: MOD:02017 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:02017 ! N-arachidonoylated residue [Term] id: MOD:02017 @@ -36539,8 +36542,8 @@ property_value: DiffFormula "C 20 H 30 N 0 O 1" xsd:string property_value: DiffMono "286.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:02018 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:02018 ! arachidonoylated residue [Term] id: MOD:02018 @@ -36552,8 +36555,8 @@ property_value: DiffFormula "C 20 H 30 N 0 O 1" xsd:string property_value: DiffMono "286.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:02019 @@ -36568,8 +36571,8 @@ property_value: MassAvg "412.66" xsd:float property_value: MassMono "412.308979" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 -is_a: MOD:02020 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:02020 ! N-timnodonoylated residue [Term] id: MOD:02020 @@ -36581,8 +36584,8 @@ property_value: DiffFormula "C 20 H 28 N 0 O 1" xsd:string property_value: DiffMono "284.214016" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:02021 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:02021 ! timnodonoylated residue [Term] id: MOD:02021 @@ -36594,8 +36597,8 @@ property_value: DiffFormula "C 20 H 28 N 0 O 1" xsd:string property_value: DiffMono "284.214016" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:02022 @@ -36610,8 +36613,8 @@ property_value: MassAvg "438.71" xsd:float property_value: MassMono "438.324629" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:01875 -is_a: MOD:02023 +is_a: MOD:01875 ! N6-acylated L-lysine +is_a: MOD:02023 ! N-cervonoylated residue [Term] id: MOD:02023 @@ -36623,8 +36626,8 @@ property_value: DiffFormula "C 22 H 30 N 0 O 1" xsd:string property_value: DiffMono "310.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00670 -is_a: MOD:02024 +is_a: MOD:00670 ! N-acylated residue +is_a: MOD:02024 ! cervonoylated residue [Term] id: MOD:02024 @@ -36636,8 +36639,8 @@ property_value: DiffFormula "C 22 H 30 N 0 O 1" xsd:string property_value: DiffMono "310.229666" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00649 -is_a: MOD:01155 +is_a: MOD:00649 ! acylated residue +is_a: MOD:01155 ! lipoconjugated residue [Term] id: MOD:02025 @@ -36651,7 +36654,7 @@ property_value: MassAvg "257.24" xsd:float property_value: MassMono "257.101167" xsd:float property_value: Origin "E" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:02026 @@ -36666,9 +36669,9 @@ property_value: MassAvg "279.33" xsd:float property_value: MassMono "279.034748" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00905 -is_a: MOD:01862 -relationship: part_of MOD:00234 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:01862 ! disulfide conjugated residue +relationship: part_of MOD:00234 ! L-cysteine glutathione disulfide [Term] id: MOD:02027 @@ -36677,10 +36680,10 @@ def: "A protein modification that effectively crosslinks the N6-amino of a pepti subset: PSI-MOD-slim property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02047 -is_a: MOD:02051 -is_a: MOD:01875 -relationship: contains MOD:00134 +is_a: MOD:02047 ! crosslinked glycine residue +is_a: MOD:02051 ! crosslinked L-lysine residue +is_a: MOD:01875 ! N6-acylated L-lysine +relationship: contains MOD:00134 ! N6-glycyl-L-lysine [Term] id: MOD:02028 @@ -36694,10 +36697,10 @@ property_value: DiffAvg "144.10" xsd:float property_value: DiffMono "144.102411" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:01426 -is_a: MOD:01705 -is_a: MOD:01709 -is_a: MOD:01513 +is_a: MOD:01426 ! isotope tagged reagent derivatized residue +is_a: MOD:01705 ! isotope tagged reagent acylated residue +is_a: MOD:01709 ! iTRAQ4plex reporter+balance reagent N-acylated residue +is_a: MOD:01513 ! modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.1 Da [Term] id: MOD:02029 @@ -36708,7 +36711,7 @@ property_value: DiffFormula "C 0 H 0 N 0 O 0" xsd:string property_value: DiffMono "0.000000" xsd:float property_value: Origin "X, P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00915 +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:02030 @@ -36719,7 +36722,7 @@ property_value: DiffFormula "C 0 H 0 N 0 O 0" xsd:string property_value: DiffMono "0.000000" xsd:float property_value: Origin "X, P" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00915 +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:02031 @@ -36736,8 +36739,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1519 xref: GNO:G03382KH -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:02032 @@ -36754,8 +36757,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1785 xref: GNO:G70418MS -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:02033 @@ -36772,8 +36775,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1484 xref: GNO:G82119TF -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:02034 @@ -36790,8 +36793,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1781 xref: GNO:G50757KG -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:02035 @@ -36808,8 +36811,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1509 xref: GNO:G84820NF -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:02036 @@ -36826,8 +36829,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1531 xref: GNO:G70101JE -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:02037 @@ -36845,8 +36848,8 @@ property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1480 xref: GNO:G05724UK -is_a: MOD:00725 -is_a: MOD:00160 +is_a: MOD:00725 ! complex glycosylation +is_a: MOD:00160 ! N4-glycosyl-L-asparagine [Term] id: MOD:02038 @@ -36867,8 +36870,8 @@ property_value: Origin "H" xsd:string property_value: Source "natural" xsd:string xref: Unimod:34 xref: uniprot.ptm:PTM-0176 -is_a: MOD:00599 -is_a: MOD:00661 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00661 ! methylated histidine [Term] id: MOD:02039 @@ -36876,7 +36879,7 @@ name: aminated residue def: "A protein modification that effectively replaces a hydrogen group with a amino group" [] synonym: "AmRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:02040 @@ -36885,7 +36888,7 @@ def: "A protein modification that contains an L-alanine residue crosslinked to o subset: PSI-MOD-slim synonym: "XlnkAla" EXACT PSI-MOD-label [] property_value: Origin "A" xsd:string -is_a: MOD:00901 +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:02041 @@ -36894,7 +36897,7 @@ def: "A protein modification that contains an L-arginine residue crosslinked to subset: PSI-MOD-slim synonym: "XlnkArg" EXACT PSI-MOD-label [] property_value: Origin "R" xsd:string -is_a: MOD:00902 +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:02042 @@ -36903,7 +36906,7 @@ def: "A protein modification that contains an L-asparagine residue crosslinked t subset: PSI-MOD-slim synonym: "XlnkAsn" EXACT PSI-MOD-label [] property_value: Origin "N" xsd:string -is_a: MOD:00903 +is_a: MOD:00903 ! modified L-asparagine residue [Term] id: MOD:02043 @@ -36912,7 +36915,7 @@ def: "A protein modification that contains an L-aspartic acid residue crosslinke subset: PSI-MOD-slim synonym: "XlnkAsp" EXACT PSI-MOD-label [] property_value: Origin "D" xsd:string -is_a: MOD:00904 +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:02044 @@ -36921,7 +36924,7 @@ def: "A protein modification that contains an L-cysteine residue crosslinked to subset: PSI-MOD-slim synonym: "XlnkCys" EXACT PSI-MOD-label [] property_value: Origin "C" xsd:string -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:02045 @@ -36930,7 +36933,7 @@ def: "A protein modification that contains an L-glutamic acid residue crosslinke subset: PSI-MOD-slim synonym: "XlnkGlu" EXACT PSI-MOD-label [] property_value: Origin "E" xsd:string -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:02046 @@ -36939,7 +36942,7 @@ def: "A protein modification that contains an L-glutamine residue crosslinked to subset: PSI-MOD-slim synonym: "XlnkGln" EXACT PSI-MOD-label [] property_value: Origin "Q" xsd:string -is_a: MOD:00907 +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:02047 @@ -36948,7 +36951,7 @@ def: "A protein modification that contains a glycine residue crosslinked to one subset: PSI-MOD-slim synonym: "XlnkGly" EXACT PSI-MOD-label [] property_value: Origin "G" xsd:string -is_a: MOD:00908 +is_a: MOD:00908 ! modified glycine residue [Term] id: MOD:02048 @@ -36957,7 +36960,7 @@ def: "A protein modification that contains an L-histidine residue crosslinked to subset: PSI-MOD-slim synonym: "XlnkHis" EXACT PSI-MOD-label [] property_value: Origin "H" xsd:string -is_a: MOD:00909 +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:02049 @@ -36966,7 +36969,7 @@ def: "A protein modification that contains an L-isoleucine residue crosslinked t subset: PSI-MOD-slim synonym: "XlnkIle" EXACT PSI-MOD-label [] property_value: Origin "I" xsd:string -is_a: MOD:00910 +is_a: MOD:00910 ! modified L-isoleucine residue [Term] id: MOD:02050 @@ -36975,7 +36978,7 @@ def: "A protein modification that contains an L-leucine residue crosslinked to o subset: PSI-MOD-slim synonym: "XlnkLeu" EXACT PSI-MOD-label [] property_value: Origin "L" xsd:string -is_a: MOD:00911 +is_a: MOD:00911 ! modified L-leucine residue [Term] id: MOD:02051 @@ -36984,7 +36987,7 @@ def: "A protein modification that contains an L-lysine residue crosslinked to on subset: PSI-MOD-slim synonym: "XlnkLys" EXACT PSI-MOD-label [] property_value: Origin "K" xsd:string -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:02052 @@ -36993,7 +36996,7 @@ def: "A protein modification that contains an L-methionine residue crosslinked t subset: PSI-MOD-slim synonym: "XlnkMet" EXACT PSI-MOD-label [] property_value: Origin "M" xsd:string -is_a: MOD:00913 +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:02053 @@ -37002,7 +37005,7 @@ def: "A protein modification that contains an L-phenylalanine residue crosslinke subset: PSI-MOD-slim synonym: "XlnkPhe" EXACT PSI-MOD-label [] property_value: Origin "F" xsd:string -is_a: MOD:00914 +is_a: MOD:00914 ! modified L-phenylalanine residue [Term] id: MOD:02054 @@ -37011,7 +37014,7 @@ def: "A protein modification that contains an L-proline residue crosslinked to o subset: PSI-MOD-slim synonym: "XlnkPro" EXACT PSI-MOD-label [] property_value: Origin "P" xsd:string -is_a: MOD:00915 +is_a: MOD:00915 ! modified L-proline residue [Term] id: MOD:02055 @@ -37020,7 +37023,7 @@ def: "A protein modification that contains an L-serine residue crosslinked to on subset: PSI-MOD-slim synonym: "XlnkSer" EXACT PSI-MOD-label [] property_value: Origin "S" xsd:string -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:02056 @@ -37029,7 +37032,7 @@ def: "A protein modification that contains an L-threonine residue crosslinked to subset: PSI-MOD-slim synonym: "XlnkThr" EXACT PSI-MOD-label [] property_value: Origin "T" xsd:string -is_a: MOD:00917 +is_a: MOD:00917 ! modified L-threonine residue [Term] id: MOD:02057 @@ -37038,7 +37041,7 @@ def: "A protein modification that contains an L-tryptophan residue crosslinked t subset: PSI-MOD-slim synonym: "XlnkTrp" EXACT PSI-MOD-label [] property_value: Origin "W" xsd:string -is_a: MOD:00918 +is_a: MOD:00918 ! modified L-tryptophan residue [Term] id: MOD:02058 @@ -37047,7 +37050,7 @@ def: "A protein modification that contains an L-tyrosine residue crosslinked to subset: PSI-MOD-slim synonym: "XlnkTyr" EXACT PSI-MOD-label [] property_value: Origin "Y" xsd:string -is_a: MOD:00919 +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:02059 @@ -37056,7 +37059,7 @@ def: "A protein modification that contains an L-valine residue crosslinked to on subset: PSI-MOD-slim synonym: "XlnkVal" EXACT PSI-MOD-label [] property_value: Origin "V" xsd:string -is_a: MOD:00920 +is_a: MOD:00920 ! modified L-valine residue [Term] id: MOD:02060 @@ -37065,7 +37068,7 @@ def: "A protein modification that contains an D-asparagine residue crosslinked t subset: PSI-MOD-slim synonym: "XlnkDAsn" EXACT PSI-MOD-label [] property_value: Origin "MOD:00203" xsd:string -is_a: MOD:02097 +is_a: MOD:02097 ! modified D-asparagine residue [Term] id: MOD:02061 @@ -37073,7 +37076,7 @@ name: crosslinked L-selenocysteine residue def: "A protein modification that contains an L-selenocysteine residue crosslinked to one or more amino acid residues." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "U" xsd:string -is_a: MOD:01158 +is_a: MOD:01158 ! modified L-selenocysteine residue [Term] id: MOD:02062 @@ -37081,7 +37084,7 @@ name: crosslinked N-formyl-L-methionine residue def: "A protein modification that contains an N-formyl-L-methionine residue crosslinked to one or more amino acid residues." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "MOD:00030" xsd:string -is_a: MOD:01450 +is_a: MOD:01450 ! modified N-formyl-L-methionine residue [Term] id: MOD:02063 @@ -37090,7 +37093,7 @@ def: "A protein modification that contains an D-phenylalanine residue crosslinke subset: PSI-MOD-slim synonym: "XlnkDPhe" EXACT PSI-MOD-label [] property_value: Origin "F" xsd:string -is_a: MOD:00201 +is_a: MOD:00201 ! D-phenylalanine [Term] id: MOD:02064 @@ -37099,7 +37102,7 @@ def: "A protein modification that contains an D-serine residue crosslinked to on subset: PSI-MOD-slim synonym: "XlnkDSer" EXACT PSI-MOD-label [] property_value: Origin "S" xsd:string -is_a: MOD:00202 +is_a: MOD:00202 ! D-serine (Ser) [Term] id: MOD:02065 @@ -37107,7 +37110,7 @@ name: metal or metal cluster coordinated L-alanine residue def: "A protein modification that contains an L-alanine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "A" xsd:string -is_a: MOD:00901 +is_a: MOD:00901 ! modified L-alanine residue [Term] id: MOD:02066 @@ -37115,7 +37118,7 @@ name: metal or metal cluster coordinated L-aspartic acid residue def: "A protein modification that contains an L-aspartic acid residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "D" xsd:string -is_a: MOD:00904 +is_a: MOD:00904 ! modified L-aspartic acid residue [Term] id: MOD:02067 @@ -37123,7 +37126,7 @@ name: metal or metal cluster coordinated L-cysteine residue def: "A protein modification that contains an L-cysteine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "C" xsd:string -is_a: MOD:00905 +is_a: MOD:00905 ! modified L-cysteine residue [Term] id: MOD:02068 @@ -37131,7 +37134,7 @@ name: metal or metal cluster coordinated L-glutamic acid residue def: "A protein modification that contains an L-glutamic acid residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "E" xsd:string -is_a: MOD:00906 +is_a: MOD:00906 ! modified L-glutamic acid residue [Term] id: MOD:02069 @@ -37139,7 +37142,7 @@ name: metal or metal cluster coordinated L-glutamine residue def: "A protein modification that contains an L-glutamine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "Q" xsd:string -is_a: MOD:00907 +is_a: MOD:00907 ! modified L-glutamine residue [Term] id: MOD:02070 @@ -37147,7 +37150,7 @@ name: metal or metal cluster coordinated L-histidine residue def: "A protein modification that contains an L-histidine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "H" xsd:string -is_a: MOD:00909 +is_a: MOD:00909 ! modified L-histidine residue [Term] id: MOD:02071 @@ -37155,7 +37158,7 @@ name: metal or metal cluster coordinated L-methionine residue def: "A protein modification that contains an L-methionine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "M" xsd:string -is_a: MOD:00913 +is_a: MOD:00913 ! modified L-methionine residue [Term] id: MOD:02072 @@ -37163,7 +37166,7 @@ name: metal or metal cluster coordinated L-serine residue def: "A protein modification that contains an L-serine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "S" xsd:string -is_a: MOD:00916 +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:02073 @@ -37171,7 +37174,7 @@ name: metal or metal cluster coordinated L-selenocysteine residue def: "A protein modification that contains an L-selenocysteine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "U" xsd:string -is_a: MOD:01158 +is_a: MOD:01158 ! modified L-selenocysteine residue [Term] id: MOD:02074 @@ -37179,7 +37182,7 @@ name: metal or metal cluster coordinated L-lysine residue def: "A protein modification that contains an L-lysine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "K" xsd:string -is_a: MOD:00912 +is_a: MOD:00912 ! modified L-lysine residue [Term] id: MOD:02075 @@ -37187,7 +37190,7 @@ name: metal or metal cluster coordinated L-tyrosine residue def: "A protein modification that contains an L-tyrosine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "Y" xsd:string -is_a: MOD:00919 +is_a: MOD:00919 ! modified L-tyrosine residue [Term] id: MOD:02076 @@ -37195,7 +37198,7 @@ name: metal or metal cluster coordinated L-arginine residue def: "A protein modification that contains an L-arginine residue coordinated to one or more metal atoms or metal clusters." [PubMed:18688235] subset: PSI-MOD-slim property_value: Origin "R" xsd:string -is_a: MOD:00902 +is_a: MOD:00902 ! modified L-arginine residue [Term] id: MOD:02077 @@ -37209,7 +37212,7 @@ property_value: DiffMono "28.990164" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string xref: Unimod:275 -is_a: MOD:01156 +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:02078 @@ -37220,7 +37223,7 @@ synonym: "Acetyl" RELATED PSI-MS-label [] synonym: "AcRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:00649 +is_a: MOD:00649 ! acylated residue [Term] id: MOD:02079 @@ -37235,7 +37238,7 @@ property_value: DiffFormula "C 4 H 4 N 0 O 2" xsd:string property_value: DiffMono "84.021129" xsd:float property_value: Origin "X" xsd:string property_value: Source "artifact" xsd:string -is_a: MOD:02078 +is_a: MOD:02078 ! acetylated residue [Term] id: MOD:02080 @@ -37251,8 +37254,8 @@ property_value: MassAvg "172.16" xsd:float property_value: MassMono "172.060983" xsd:float property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:02079 -is_a: MOD:00916 +is_a: MOD:02079 ! diacetylated residue +is_a: MOD:00916 ! modified L-serine residue [Term] id: MOD:02081 @@ -37266,9 +37269,9 @@ property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string property_value: TermSpec "N-term" xsd:string xref: Unimod:64 -is_a: MOD:01029 -is_a: MOD:01696 -is_a: MOD:01426 +is_a: MOD:01029 ! succinylated residue +is_a: MOD:01696 ! alpha-amino acylated residue +is_a: MOD:01426 ! isotope tagged reagent derivatized residue [Term] id: MOD:02082 @@ -37280,7 +37283,7 @@ property_value: DiffAvg "-20.03" xsd:float property_value: DiffFormula "C 0 H -4 N 0 O -1" xsd:string property_value: DiffMono "-20.026215" xsd:float property_value: Origin "X" xsd:string -is_a: MOD:00683 +is_a: MOD:00683 ! dehydrogenated residue [Term] id: MOD:02083 @@ -37293,7 +37296,7 @@ property_value: DiffAvg "456.35" xsd:float property_value: DiffMono "456.104615" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00896 +is_a: MOD:00896 ! FMN modified residue [Term] id: MOD:02084 @@ -37306,7 +37309,7 @@ property_value: DiffFormula "C 17 H 19 N 4 O 9 P 1" xsd:string property_value: DiffMono "454.088965" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00896 +is_a: MOD:00896 ! FMN modified residue [Term] id: MOD:02085 @@ -37319,7 +37322,7 @@ property_value: DiffFormula "C 17 H 19 N 4 O 9 P 1" xsd:string property_value: DiffMono "454.088965" xsd:float property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00896 +is_a: MOD:00896 ! FMN modified residue [Term] id: MOD:02086 @@ -37327,8 +37330,8 @@ name: brominated phenylalanine def: "A protein modification that effectively substitutes a hydrogen atom of an L-phenylalanine residue with a bromine atom." [PubMed:18688235] synonym: "BrPhe" EXACT PSI-MOD-label [] property_value: Origin "F" xsd:string -is_a: MOD:00754 -is_a: MOD:01066 +is_a: MOD:00754 ! brominated residue +is_a: MOD:01066 ! halogenated phenylalanine [Term] id: MOD:02087 @@ -37338,7 +37341,7 @@ subset: PSI-MOD-slim synonym: "ADPRibRes" EXACT PSI-MOD-label [] property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00701 +is_a: MOD:00701 ! nucleotide or nucleic acid modified residue [Term] id: MOD:02088 @@ -37348,8 +37351,8 @@ comment: This represents the replacement of an encoded residue in a polypeptide, subset: PSI-MOD-slim property_value: Origin "X" xsd:string property_value: Source "natural" xsd:string -is_a: MOD:00009 -is_a: MOD:01156 +is_a: MOD:00009 ! natural residue +is_a: MOD:01156 ! protein modification categorized by chemical process [Term] id: MOD:02089 @@ -37369,8 +37372,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:417 xref: uniprot.ptm:PTM-0501 -is_a: MOD:00916 -is_a: MOD:01166 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01166 ! uridylated residue [Term] id: MOD:02090 @@ -37390,8 +37393,8 @@ property_value: Origin "T" xsd:string property_value: Source "natural" xsd:string xref: Unimod:417 xref: uniprot.ptm:PTM-0502 -is_a: MOD:00917 -is_a: MOD:01166 +is_a: MOD:00917 ! modified L-threonine residue +is_a: MOD:01166 ! uridylated residue [Term] id: MOD:02091 @@ -37410,8 +37413,8 @@ property_value: Origin "S" xsd:string property_value: Source "natural" xsd:string xref: Unimod:405 xref: uniprot.ptm:PTM-0651 -is_a: MOD:00916 -is_a: MOD:01165 +is_a: MOD:00916 ! modified L-serine residue +is_a: MOD:01165 ! adenylated residue [Term] id: MOD:02092 @@ -37428,8 +37431,8 @@ property_value: MassMono "233.035793" xsd:float property_value: Origin "C" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0676 -is_a: MOD:00905 -is_a: MOD:00001 +is_a: MOD:00905 ! modified L-cysteine residue +is_a: MOD:00001 ! alkylated residue [Term] id: MOD:02093 @@ -37446,7 +37449,7 @@ property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: Unimod:1849 xref: uniprot.ptm:PTM-0638 -is_a: MOD:01875 +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:02094 @@ -37462,7 +37465,7 @@ property_value: MassMono "214.131742" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0499 -is_a: MOD:01875 +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:02095 @@ -37478,7 +37481,7 @@ property_value: MassMono "242.126657" xsd:float property_value: Origin "K" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0487 -is_a: MOD:01875 +is_a: MOD:01875 ! N6-acylated L-lysine [Term] id: MOD:02096 @@ -37496,11 +37499,11 @@ property_value: MassMono "128.058578" xsd:float property_value: Origin "N" xsd:string property_value: Source "natural" xsd:string xref: uniprot.ptm:PTM-0691 -is_a: MOD:00599 -is_a: MOD:00602 -is_a: MOD:00673 -is_a: MOD:02097 -is_a: MOD:00894 +is_a: MOD:00599 ! monomethylated residue +is_a: MOD:00602 ! N-methylated residue +is_a: MOD:00673 ! methylated asparagine +is_a: MOD:02097 ! modified D-asparagine residue +is_a: MOD:00894 ! residues isobaric at 128.058578 Da [Term] id: MOD:02097 @@ -37508,7 +37511,307 @@ name: modified D-asparagine residue def: "A protein modification that modifies a D-asparagine residue." [PubMed:18688235] subset: PSI-MOD-slim synonym: "ModDAsn" EXACT PSI-MOD-label [] -is_a: MOD:00203 +is_a: MOD:00203 ! D-asparagine + +[Term] +id: MOD:02106 +name: 4-hydroxy-L-tryptophan +def: "A protein modification that effectively converts an L-tryptophan residue to a 4-hydroxy-L-tryptophan." [PMID:32911085] +synonym: "(S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "16.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 11 H 10 N 2 O 2" xsd:string +property_value: MassAvg "202.21" xsd:float +property_value: MassMono "202.074228" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "hypothetical" xsd:string +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02107 +name: 5-hydroxy-L-tryptophan +def: "A protein modification that effectively converts an L-tryptophan residue to a 5-hydroxy-L-tryptophan." [PMID:32911085] +synonym: "(S)-2-Amino-3-(5-hydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "16.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 11 H 10 N 2 O 2" xsd:string +property_value: MassAvg "202.21" xsd:float +property_value: MassMono "202.074228" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "hypothetical" xsd:string +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02108 +name: 6-hydroxy-L-tryptophan +def: "A protein modification that effectively converts an L-tryptophan residue to a 6-hydroxy-L-tryptophan." [PMID:32911085] +synonym: "(S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "16.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 11 H 10 N 2 O 2" xsd:string +property_value: MassAvg "202.21" xsd:float +property_value: MassMono "202.074228" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "hypothetical" xsd:string +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02109 +name: oxindolylalanine +def: "A protein modification that effectively converts an L-tryptophan residue to a oxindolylalanine." [PMID:32911085] +synonym: "Oxindolyl-L-alanine" EXACT PSI-MOD-alternate [] +synonym: "2-amino-3-(2-oxoindolin-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "16.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 11 H 10 N 2 O 2" xsd:string +property_value: MassAvg "202.21" xsd:float +property_value: MassMono "202.074228" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "hypothetical" xsd:string +is_a: MOD:01622 ! monohydroxylated tryptophan + +[Term] +id: MOD:02110 +name: 5-hydroxy-L-proline +def: "A protein modification that effectively converts an L-proline residue to 5-hydroxy-L-proline" [ChEBI:18095, PubMed:11292863, PubMed:2400108, PubMed:3734192, RESID:AA0030] +subset: PSI-MOD-slim +synonym: "(2S,5S)-5-hydroxypyrrolidine-2-carboxylic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "16.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 5 H 7 N 1 O 2" xsd:string +property_value: MassAvg "113.12" xsd:float +property_value: MassMono "113.047678" xsd:float +property_value: Origin "P" xsd:string +property_value: Source "natural" xsd:string +is_a: MOD:01024 ! monohydroxylated proline + +[Term] +id: MOD:02111 +name: (2S,4S)-5-hydroxyleucine +def: "A protein modification that effectively converts an L-leucine residue to a (2S,4S)-5-hydroxyleucine." [PubMed:9164839] +synonym: "(2S,4S)-2-amino-5-hydroxy-4-methylpentanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "16.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 6 H 11 N 1 O 2" xsd:string +property_value: MassAvg "129.16" xsd:float +property_value: MassMono "129.078979" xsd:float +property_value: Origin "L" xsd:string +property_value: Source "artifact" xsd:string +is_a: MOD:01411 ! monohydroxylated leucine + +[Term] +id: MOD:02112 +name: 4,5-Dihydroxytryptophan +def: "A protein modification that converts an L-tryptophan residue to 4,5-Dihydroxytryptophan." [PubMed:16046449, PubMed:30267362] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(2S)-2-amino-3-(4,5-dihydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "32.00" xsd:float +property_value: DiffFormula "O 2" xsd:string +property_value: DiffMono "31.989829" xsd:float +property_value: Formula "C 11 H 10 N 2 O 3" xsd:string +property_value: MassAvg "218.21" xsd:float +property_value: MassMono "218.069142" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "hypothetical" xsd:string +xref: Unimod:425 +is_a: MOD:00918 ! modified L-tryptophan residue + +[Term] +id: MOD:02113 +name: 5,6-Dihydroxytryptophan +def: "A protein modification that converts an L-tryptophan residue to 5,6-Dihydroxytryptophan." [PubMed:16046449, PubMed:30267362] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(2S)-2-amino-3-(5,6-dihydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "32.00" xsd:float +property_value: DiffFormula "O 2" xsd:string +property_value: DiffMono "31.989829" xsd:float +property_value: Formula "C 11 H 10 N 2 O 3" xsd:string +property_value: MassAvg "218.21" xsd:float +property_value: MassMono "218.069142" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "hypothetical" xsd:string +xref: Unimod:425 +is_a: MOD:00918 ! modified L-tryptophan residue + +[Term] +id: MOD:02114 +name: 5,7-Dihydroxytryptophan +def: "A protein modification that converts an L-tryptophan residue to 5,7-Dihydroxytryptophan." [PubMed:16046449, PubMed:30267362] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(2S)-2-amino-3-(5,7-dihydroxy-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "32.00" xsd:float +property_value: DiffFormula "O 2" xsd:string +property_value: DiffMono "31.989829" xsd:float +property_value: Formula "C 11 H 10 N 2 O 3" xsd:string +property_value: MassAvg "218.21" xsd:float +property_value: MassMono "218.069142" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "hypothetical" xsd:string +xref: Unimod:425 +is_a: MOD:00918 ! modified L-tryptophan residue + +[Term] +id: MOD:02115 +name: Dioxindolylalanine +def: "A protein modification that converts an L-tryptophan residue to dioxindolylalanine." [PubMed:10554268, PubMed:32911085] +subset: PSI-MOD-slim +synonym: "dihydroxy" RELATED Unimod-description [] +synonym: "Dioxidation" RELATED PSI-MS-label [] +synonym: "Double oxidation of Trp" EXACT DeltaMass-label [] +synonym: "(alphaS)-alpha-Amino-2,3-dihydro-3-hydroxy-2-oxo-1H-indole-3-propanoic acid" EXACT PSI-MOD-alternate [] +synonym: "(2S)-2-amino-3-(3-hydroxy-2-oxo-1H-indol-3-yl)propanoic acid" EXACT PSI-MOD-alternate [] +synonym: "Dioxindolyl-L-alanine" EXACT PSI-MOD-alternate [] +property_value: DiffAvg "32.00" xsd:float +property_value: DiffFormula "O 2" xsd:string +property_value: DiffMono "31.989829" xsd:float +property_value: Formula "C 11 H 10 N 2 O 3" xsd:string +property_value: MassAvg "218.21" xsd:float +property_value: MassMono "218.069142" xsd:float +property_value: Origin "W" xsd:string +property_value: Source "artifact" xsd:string +xref: Unimod:425 +is_a: MOD:00918 ! modified L-tryptophan residue + +[Term] +id: MOD:02098 +name: residue modified by radical mechanism +def: "A chemical transformation driven by a radical reaction." [PubMed:14670063, doi:https\://pubs.acs.org/doi/10.1021/ac035104h] + +[Term] +id: MOD:02099 +name: residue modified by radical hydroxylation +def: "A hydroxyl substition induced by a radical reaction." [PubMed:17683160] +is_a: MOD:02098 ! residue modified by radical mechanism + +[Term] +id: MOD:02100 +name: N2-Formyl-L-asparagine +def: "A protein modification that effectively transforms an L-histidine residue to N2-formyl asparagine" [osti.article:6518101, doi:10.1016/0040-4039(91)80099-R] +synonym: "Nω-formyl asparagine" EXACT PSI-MOD-label [] +synonym: "(2S)-4-amino-2-formamido-4-oxobutanoic acid" EXACT PSI-MOD-label [] +synonym: "Formylasparagine" EXACT PSI-MOD-label [] +subset: PSI-MOD-slim +property_value: DiffAvg "4.97" xsd:float +property_value: DiffFormula "H -1 C -1 N -1 O 2" xsd:string +property_value: DiffMono "4.978930" xsd:float +property_value: Formula "C 5 H 6 N 2 O 3" xsd:string +property_value: MassAvg "142.04" xsd:float +property_value: MassMono "142.03784" xsd:float +property_value: Origin "H" xsd:string +property_value: Source "artifact" xsd:string +xref: Unimod:1917 +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:02099 ! residue modified by radical hydroxylation + +[Term] +id: MOD:02101 +name: 2-Amino-4,5-dioxopentanoic acid +def: "A protein modification that effectively transforms a histidine side chain to that of 2-Amino-4,5-dioxopentanoic acid" [PubMed:14670063] +subset: PSI-MOD-slim +property_value: DiffAvg "-10.04" xsd:float +property_value: DiffFormula "H -2 C -1 N -2 O 2" xsd:string +property_value: DiffMono "-10.031969" xsd:float +property_value: Formula "C 5 H 5 N 1 O 3" xsd:string +property_value: MassAvg "127.03" xsd:float +property_value: MassMono "127.026941" xsd:float +property_value: Origin "H" xsd:string +property_value: Source "artifact" xsd:string +is_a: MOD:00909 ! modified L-histidine residue +is_a: MOD:02099 ! residue modified by radical hydroxylation + +[Term] +id: MOD:02102 +name: 2-hydroxy-L-phenylalanine +def: "A protein modification that effectively converts a L-Phenylalanine residue to 2-hydroxy-L-phenylalanine." [PubMed:8509373] +synonym: "DL-o-Tyrosine" EXACT PSI-MOD-label [] +synonym: "2-amino-3-(2-hydroxyphenyl)propanoic acid" EXACT PSI-MOD-label [] +synonym: "O-Tyrosine" EXACT PSI-MOD-label [] +synonym: "o-tyrosine" EXACT PSI-MOD-alternate [] +subset: PSI-MOD-slim +property_value: DiffAvg "16.0" xsd:float +property_value: DiffFormula "O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 9 H 9 N 1 O 2" xsd:string +property_value: MassAvg "163.06" xsd:float +property_value: MassMono "163.063325" xsd:float +property_value: Origin "F" xsd:string +property_value: Source "artifact" xsd:string +xref: Unimod:35 +is_a: MOD:02116 ! monohydroxylated phenylalanine +is_a: MOD:02099 ! residue modified by radical hydroxylation + +[Term] +id: MOD:02104 +name: 4-hydroxy-L-phenylalanine +def: "A protein modification that effectively substitutes a hydroxy group at position 4 of L-phenylalanine" [PubMed:7408053] +synonym: "L-tyrosine" EXACT PSI-MOD-alternate [] +synonym: "L-Tyrosine" EXACT PSI-MOD-alternate [] +synonym: "(2S)-2-amino-3-(4-hydroxyphenyl)propanoic acid" EXACT PSI-MOD-alternate [] +synonym: "Phe->Tyr" EXACT PSI-MOD-alternate [] +subset: PSI-MOD-slim +property_value: DiffFormula "O 1" xsd:string +property_value: Origin "F" xsd:string +xref: Unimod:35 +property_value: DiffAvg "16.00" xsd:float +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 9 H 9 N 1 O 2" xsd:string +property_value: MassAvg "163.18" xsd:float +property_value: MassMono "163.063329" xsd:float +property_value: Source "artifact" xsd:string +is_a: MOD:00914 ! modified L-phenylalanine residue +is_a: MOD:02116 ! monohydroxylated phenylalanine + +[Term] +id: MOD:02105 +name: L-2,5-dihydroxyphenylalanine (Phe) +def: "A protein modification that effectively converts an L-tyrosine residue to L-2',5'-dihydroxyphenylalanine." [doi:10.1016/j.radphyschem.2003.11.008] +subset: PSI-MOD-slim +synonym: "2-amino-3-(2,5-dihydroxyphenyl)propanoic acid" EXACT PSI-MOD-label [] +synonym: "2,5-Dihydroxyphenylalanine" EXACT PSI-MOD-label [] +synonym: "2,5-Dioxyphenylalanine" EXACT PSI-MOD-label [] +property_value: DiffAvg "32.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "31.989828" xsd:float +property_value: Formula "C 9 H 9 N 1 O 3" xsd:string +property_value: MassAvg "179.18" xsd:float +property_value: MassMono "179.058243" xsd:float +property_value: Origin "F" xsd:string +property_value: Source "artifact" xsd:string +is_a: MOD:00428 ! dihydroxylated residue +is_a: MOD:00914 ! modified L-phenylalanine residue + +[Term] +id: MOD:02116 +name: monohydroxylated phenylalanine +def: "A protein modification that effectively converts an L-phenylalanine residue to a monohydroxylated phenylalanine." [Unimod:35#F] +subset: PSI-MOD-slim +synonym: "Oxidation" RELATED PSI-MS-label [] +property_value: DiffAvg "16.00" xsd:float +property_value: DiffFormula "C 0 H 0 N 0 O 1" xsd:string +property_value: DiffMono "15.994915" xsd:float +property_value: Formula "C 6 H 12 N 2 O 2" xsd:string +property_value: MassAvg "144.17" xsd:float +property_value: MassMono "144.089878" xsd:float +property_value: Origin "F" xsd:string +property_value: Source "artifact" xsd:string +xref: Unimod:35 +is_a: MOD:00425 ! monohydroxylated residue +is_a: MOD:00914 ! modified L-phenylalanine residue [Typedef] id: contains diff --git a/PSI-MOD.owl b/PSI-MOD.owl index cdc12a0..973ac05 100644 --- a/PSI-MOD.owl +++ b/PSI-MOD.owl @@ -10,11 +10,11 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - - 13:06:2021 12:12 + + 17:11:2025 12:12 PSI-MOD 1.2 - Joshua Klein + Eric Deutsch Annotation note 01 - "[PSI-MOD:ref]" has been replaced by PubMed:18688235. Annotation note 02 - When an entry in the RESID Database is annotated with different sources because the same modification can arise from different encoded amino acids, then the PSI-MOD definition for each different source instance carries the RESID cross-reference followed by a hash symbol "#" and a 3 or 4 character label. When an entry in the RESID Database is annotated as a general modification with the same enzymatic activity producing different chemical structures depending on natural variation in the nonproteinaceous substrate, on secondary modifications that do not change the nature of the primary modification, or on a combination of a primary and one or more secondary modifications on the same residue, then the PSI-MOD definition for each different instance carries the RESID cross-reference followed by the special tag "#var". Annotation note 03 - When an entry in the Unimod database is annotated as a general modification, and one or more instance sites are listed, then the PSI-MOD definition for each different site instance carries the Unimod cross-reference followed by a hash symbol and an amino acid code, "N-term" or "C-term". @@ -26,7 +26,7 @@ Annotation note 09 - The Open Mass Spectrometry Search Algorithm, OMSSA, enumerated list of modifications are being incorporated. The string values are synonyms with the synonymtypedef "OMSSA-label", and their integer values (which are supposed to be stable) are definition cross-references. Annotation note 10 - GNOme is the Glycan Naming and Subsumption Ontology (https://gnome.glyomics.org/), an ontology for the support of glycomics. PSI-MOD does not have all possible glycans in its entries, just the ones that are noted to be on proteins and have been requested for addition. GNOme uses GlyTouCan (http://glytoucan.org/) to provide stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). ISO-8601 date: 2022-06-13 12:12Z - PSI-MOD version: 1.031.6 + PSI-MOD version: 1.032.4 RESID release: 75.00 @@ -21409,7 +21409,6 @@ glutathione disulfide MOD:00234 - From DeltaMass: Average Mass: 305 Glutamyl-transpeptidase cleaves glutathione into cysteinylglycine (Cys-Gly) and a Glu residue. [PubMed: 28537416] L-cysteine glutathione disulfide @@ -76010,6 +76009,7 @@ + A protein modification that effectively converts an L-phenylalanine residue to 3-hydroxy-L-phenylalanine. 16.0 C 0 H 0 N 0 O 1 @@ -76021,12 +76021,15 @@ natural uniprot.ptm:PTM-0346 (2S,3S)-2-amino-3-hydroxy-3-phenylpropanoic acid + (S)-2-amino-3-(3-hydroxyphenyl)propanoic acid 3-hydoxyphenylalanine 3-hydroxy-L-phenylalanine 3-phenyl-L-serine 3HyPhe + L-m-Tyrosine L-threo-3-phenylserine MOD_RES 3-hydroxyphenylalanine + Meta-Tyrosine beta-hydroxyphenylalanine beta-phenylserine hydroxylationf @@ -76054,6 +76057,12 @@ (2S,3S)-2-amino-3-hydroxy-3-phenylpropanoic acid + + + + (S)-2-amino-3-(3-hydroxyphenyl)propanoic acid + + @@ -76078,6 +76087,12 @@ 3HyPhe + + + + L-m-Tyrosine + + @@ -76090,6 +76105,12 @@ MOD_RES 3-hydroxyphenylalanine + + + + Meta-Tyrosine + + @@ -110173,6 +110194,772 @@ ModDAsn + + + + + + + A chemical transformation driven by a radical reaction. + PSI-MOD + MOD:02098 + residue modified by radical mechanism + + + + + A chemical transformation driven by a radical reaction. + PubMed:14670063 + doi:https://pubs.acs.org/doi/10.1021/ac035104h + + + + + + + + + A hydroxyl substition induced by a radical reaction. + PSI-MOD + MOD:02099 + residue modified by radical hydroxylation + + + + + A hydroxyl substition induced by a radical reaction. + PubMed:17683160 + + + + + + + + + + A protein modification that effectively transforms an L-histidine residue to N2-formyl asparagine + 4.97 + H -1 C -1 N -1 O 2 + 4.97893 + C 5 H 6 N 2 O 3 + 142.04 + 142.03784 + H + artifact + Unimod:1917 + (2S)-4-amino-2-formamido-4-oxobutanoic acid + Formylasparagine + Nω-formyl asparagine + PSI-MOD + MOD:02100 + + N2-Formyl-L-asparagine + + + + + A protein modification that effectively transforms an L-histidine residue to N2-formyl asparagine + doi:10.1016/0040-4039(91)80099-R + osti.article:6518101 + + + + + (2S)-4-amino-2-formamido-4-oxobutanoic acid + + + + + + Formylasparagine + + + + + + Nω-formyl asparagine + + + + + + + + + + + A protein modification that effectively transforms a histidine side chain to that of 2-Amino-4,5-dioxopentanoic acid + -10.04 + H -2 C -1 N -2 O 2 + -10.031969 + C 5 H 5 N 1 O 3 + 127.03 + 127.02694 + H + artifact + PSI-MOD + MOD:02101 + + 2-Amino-4,5-dioxopentanoic acid + + + + + A protein modification that effectively transforms a histidine side chain to that of 2-Amino-4,5-dioxopentanoic acid + PubMed:14670063 + + + + + + + + + + A protein modification that effectively converts a L-Phenylalanine residue to 2-hydroxy-L-phenylalanine. + 16.0 + O 1 + 15.994915 + C 9 H 9 N 1 O 2 + 163.06 + 163.06332 + F + artifact + Unimod:35 + 2-amino-3-(2-hydroxyphenyl)propanoic acid + DL-o-Tyrosine + O-Tyrosine + o-tyrosine + PSI-MOD + MOD:02102 + + 2-hydroxy-L-phenylalanine + + + + + A protein modification that effectively converts a L-Phenylalanine residue to 2-hydroxy-L-phenylalanine. + PubMed:8509373 + + + + + 2-amino-3-(2-hydroxyphenyl)propanoic acid + + + + + + DL-o-Tyrosine + + + + + + O-Tyrosine + + + + + + o-tyrosine + + + + + + + + + + + A protein modification that effectively substitutes a hydroxy group at position 4 of L-phenylalanine + 16.0 + O 1 + 15.994915 + C 9 H 9 N 1 O 2 + 163.18 + 163.06332 + F + artifact + Unimod:35 + (2S)-2-amino-3-(4-hydroxyphenyl)propanoic acid + L-Tyrosine + L-tyrosine + Phe->Tyr + PSI-MOD + MOD:02104 + + 4-hydroxy-L-phenylalanine + + + + + A protein modification that effectively substitutes a hydroxy group at position 4 of L-phenylalanine + PubMed:7408053 + + + + + (2S)-2-amino-3-(4-hydroxyphenyl)propanoic acid + + + + + + L-Tyrosine + + + + + + L-tyrosine + + + + + + Phe->Tyr + + + + + + + + + + + A protein modification that effectively converts an L-tyrosine residue to L-2',5'-dihydroxyphenylalanine. + 32.0 + C 0 H 0 N 0 O 1 + 31.989828 + C 9 H 9 N 1 O 3 + 179.18 + 179.05824 + F + artifact + 2,5-Dihydroxyphenylalanine + 2,5-Dioxyphenylalanine + 2-amino-3-(2,5-dihydroxyphenyl)propanoic acid + PSI-MOD + MOD:02105 + + L-2,5-dihydroxyphenylalanine (Phe) + + + + + A protein modification that effectively converts an L-tyrosine residue to L-2',5'-dihydroxyphenylalanine. + doi:10.1016/j.radphyschem.2003.11.008 + + + + + 2,5-Dihydroxyphenylalanine + + + + + + 2,5-Dioxyphenylalanine + + + + + + 2-amino-3-(2,5-dihydroxyphenyl)propanoic acid + + + + + + + + + + A protein modification that effectively converts an L-tryptophan residue to a 4-hydroxy-L-tryptophan. + 16.0 + C 0 H 0 N 0 O 1 + 15.994915 + C 11 H 10 N 2 O 2 + 202.21 + 202.07423 + W + hypothetical + (S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid + PSI-MOD + MOD:02106 + 4-hydroxy-L-tryptophan + + + + + A protein modification that effectively converts an L-tryptophan residue to a 4-hydroxy-L-tryptophan. + PMID:32911085 + + + + + (S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid + + + + + + + + + + A protein modification that effectively converts an L-tryptophan residue to a 5-hydroxy-L-tryptophan. + 16.0 + C 0 H 0 N 0 O 1 + 15.994915 + C 11 H 10 N 2 O 2 + 202.21 + 202.07423 + W + hypothetical + (S)-2-Amino-3-(5-hydroxy-1H-indol-3-yl)propanoic acid + PSI-MOD + MOD:02107 + 5-hydroxy-L-tryptophan + + + + + A protein modification that effectively converts an L-tryptophan residue to a 5-hydroxy-L-tryptophan. + PMID:32911085 + + + + + (S)-2-Amino-3-(5-hydroxy-1H-indol-3-yl)propanoic acid + + + + + + + + + + A protein modification that effectively converts an L-tryptophan residue to a 6-hydroxy-L-tryptophan. + 16.0 + C 0 H 0 N 0 O 1 + 15.994915 + C 11 H 10 N 2 O 2 + 202.21 + 202.07423 + W + hypothetical + (S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid + PSI-MOD + MOD:02108 + 6-hydroxy-L-tryptophan + + + + + A protein modification that effectively converts an L-tryptophan residue to a 6-hydroxy-L-tryptophan. + PMID:32911085 + + + + + (S)-2-Amino-3-(4-hydroxy-1H-indol-3-yl)propanoic acid + + + + + + + + + + A protein modification that effectively converts an L-tryptophan residue to a oxindolylalanine. + 16.0 + C 0 H 0 N 0 O 1 + 15.994915 + C 11 H 10 N 2 O 2 + 202.21 + 202.07423 + W + hypothetical + 2-amino-3-(2-oxoindolin-3-yl)propanoic acid + Oxindolyl-L-alanine + PSI-MOD + MOD:02109 + oxindolylalanine + + + + + A protein modification that effectively converts an L-tryptophan residue to a oxindolylalanine. + PMID:32911085 + + + + + 2-amino-3-(2-oxoindolin-3-yl)propanoic acid + + + + + + Oxindolyl-L-alanine + + + + + + + + + + A protein modification that effectively converts an L-proline residue to 5-hydroxy-L-proline + 16.0 + C 0 H 0 N 0 O 1 + 15.994915 + C 5 H 7 N 1 O 2 + 113.12 + 113.047676 + P + natural + (2S,5S)-5-hydroxypyrrolidine-2-carboxylic acid + PSI-MOD + MOD:02110 + + 5-hydroxy-L-proline + + + + + A protein modification that effectively converts an L-proline residue to 5-hydroxy-L-proline + ChEBI:18095 + PubMed:11292863 + PubMed:2400108 + PubMed:3734192 + RESID:AA0030 + + + + + (2S,5S)-5-hydroxypyrrolidine-2-carboxylic acid + + + + + + + + + + A protein modification that effectively converts an L-leucine residue to a (2S,4S)-5-hydroxyleucine. + 16.0 + C 0 H 0 N 0 O 1 + 15.994915 + C 6 H 11 N 1 O 2 + 129.16 + 129.07898 + L + artifact + (2S,4S)-2-amino-5-hydroxy-4-methylpentanoic acid + PSI-MOD + MOD:02111 + (2S,4S)-5-hydroxyleucine + + + + + A protein modification that effectively converts an L-leucine residue to a (2S,4S)-5-hydroxyleucine. + PubMed:9164839 + + + + + (2S,4S)-2-amino-5-hydroxy-4-methylpentanoic acid + + + + + + + + + + A protein modification that converts an L-tryptophan residue to 4,5-Dihydroxytryptophan. + 32.0 + O 2 + 31.989828 + C 11 H 10 N 2 O 3 + 218.21 + 218.06914 + W + hypothetical + Unimod:425 + (2S)-2-amino-3-(4,5-dihydroxy-1H-indol-3-yl)propanoic acid + Double oxidation of Trp + PSI-MOD + Dioxidation + dihydroxy + MOD:02112 + + 4,5-Dihydroxytryptophan + + + + + A protein modification that converts an L-tryptophan residue to 4,5-Dihydroxytryptophan. + PubMed:16046449 + PubMed:30267362 + + + + + (2S)-2-amino-3-(4,5-dihydroxy-1H-indol-3-yl)propanoic acid + + + + + + Double oxidation of Trp + + + + + + Dioxidation + + + + + + dihydroxy + + + + + + + + + + A protein modification that converts an L-tryptophan residue to 5,6-Dihydroxytryptophan. + 32.0 + O 2 + 31.989828 + C 11 H 10 N 2 O 3 + 218.21 + 218.06914 + W + hypothetical + Unimod:425 + (2S)-2-amino-3-(5,6-dihydroxy-1H-indol-3-yl)propanoic acid + Double oxidation of Trp + PSI-MOD + Dioxidation + dihydroxy + MOD:02113 + + 5,6-Dihydroxytryptophan + + + + + A protein modification that converts an L-tryptophan residue to 5,6-Dihydroxytryptophan. + PubMed:16046449 + PubMed:30267362 + + + + + (2S)-2-amino-3-(5,6-dihydroxy-1H-indol-3-yl)propanoic acid + + + + + + Double oxidation of Trp + + + + + + Dioxidation + + + + + + dihydroxy + + + + + + + + + + A protein modification that converts an L-tryptophan residue to 5,7-Dihydroxytryptophan. + 32.0 + O 2 + 31.989828 + C 11 H 10 N 2 O 3 + 218.21 + 218.06914 + W + hypothetical + Unimod:425 + (2S)-2-amino-3-(5,7-dihydroxy-1H-indol-3-yl)propanoic acid + Double oxidation of Trp + PSI-MOD + Dioxidation + dihydroxy + MOD:02114 + + 5,7-Dihydroxytryptophan + + + + + A protein modification that converts an L-tryptophan residue to 5,7-Dihydroxytryptophan. + PubMed:16046449 + PubMed:30267362 + + + + + (2S)-2-amino-3-(5,7-dihydroxy-1H-indol-3-yl)propanoic acid + + + + + + Double oxidation of Trp + + + + + + Dioxidation + + + + + + dihydroxy + + + + + + + + + + A protein modification that converts an L-tryptophan residue to dioxindolylalanine. + 32.0 + O 2 + 31.989828 + C 11 H 10 N 2 O 3 + 218.21 + 218.06914 + W + artifact + Unimod:425 + (2S)-2-amino-3-(3-hydroxy-2-oxo-1H-indol-3-yl)propanoic acid + (alphaS)-alpha-Amino-2,3-dihydro-3-hydroxy-2-oxo-1H-indole-3-propanoic acid + Dioxindolyl-L-alanine + Double oxidation of Trp + PSI-MOD + Dioxidation + dihydroxy + MOD:02115 + + Dioxindolylalanine + + + + + A protein modification that converts an L-tryptophan residue to dioxindolylalanine. + PubMed:10554268 + PubMed:32911085 + + + + + (2S)-2-amino-3-(3-hydroxy-2-oxo-1H-indol-3-yl)propanoic acid + + + + + + (alphaS)-alpha-Amino-2,3-dihydro-3-hydroxy-2-oxo-1H-indole-3-propanoic acid + + + + + + Dioxindolyl-L-alanine + + + + + + Double oxidation of Trp + + + + + + Dioxidation + + + + + + dihydroxy + + + + + + + + + + + A protein modification that effectively converts an L-phenylalanine residue to a monohydroxylated phenylalanine. + 16.0 + C 0 H 0 N 0 O 1 + 15.994915 + C 6 H 12 N 2 O 2 + 144.17 + 144.08987 + F + artifact + Unimod:35 + PSI-MOD + Oxidation + MOD:02116 + + monohydroxylated phenylalanine + + + + + A protein modification that effectively converts an L-phenylalanine residue to a monohydroxylated phenylalanine. + Unimod:35#F + + + + + Oxidation + +