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Error creating database #84

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ngilber3 opened this issue May 4, 2020 · 1 comment
Open

Error creating database #84

ngilber3 opened this issue May 4, 2020 · 1 comment

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@ngilber3
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ngilber3 commented May 4, 2020

Hello, I am getting an error that I cannot troubleshoot when creating the database.

I first ran: taxadb download -o taxadb -t prot

Then:
taxadb create -i taxadb --dbname taxadb.sqlite

It returns this:
INFO:taxadb.app:Parsing files
INFO:taxadb.parser.TaxaDumpParser:Parsed nodes.dmp
INFO:taxadb.parser.TaxaDumpParser:Parsed names.dmp
INFO:taxadb.app:Inserting taxonomy data
INFO:taxadb.app: 0 chunks [00:00, ? chunks/s]

ERROR:taxadb.app:sqlite3 error: too many SQL variables
ERROR:taxadb.app:Maybe retry with a lower chunk size.

I'm not sure what is wrong here. I appreciate any help, thanks!

@bosborne
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bosborne commented May 8, 2020

Try something like:

taxadb create -i taxadb --dbname taxadb.sqlite --chunk 100

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