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Update input data for metrics #22

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ambrosejcarr opened this issue Mar 24, 2018 · 0 comments
Open

Update input data for metrics #22

ambrosejcarr opened this issue Mar 24, 2018 · 0 comments
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ENH Enhancement

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@ambrosejcarr
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There are several tests (marked with todo in test_metrics.py which are not adequately tested because the metadata contains no examples of what they measure.

For example:

  • multi-aligned reads
  • incorrect cell barcodes
  • reads mapping to UTR or intronic regions
  • multi-mapping reads

There are several metrics which were inconsistent with notebook versions:

  • molecule_barcode_fraction_bases_above_30_variance
  • reads_per_molecule
  • fragments_per_molecule
  • cell metrics fragments_with_single_read_evidence
  • cell metrics molecules_with_single_read_evidence
@ambrosejcarr ambrosejcarr added the ENH Enhancement label Mar 29, 2018
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