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HTS-spec allows marking of duplicate reads. Can we mark duplicate fragments? #30

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ambrosejcarr opened this issue Mar 30, 2018 · 0 comments
Open

HTS-spec allows marking of duplicate reads. Can we mark duplicate fragments? #30

ambrosejcarr opened this issue Mar 30, 2018 · 0 comments
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ENH Enhancement

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@ambrosejcarr
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The 0x400 FLAG field is used to mark a duplicate fragment. If we could mark a duplicate molecule with a similar bit, it would enable very fast count matrix construction.
@ambrosejcarr ambrosejcarr added the ENH Enhancement label Mar 30, 2018
@ambrosejcarr ambrosejcarr changed the title HST-spec marks duplicate reads. Can we mark duplicate fragments? HTS-spec allows marking of duplicate reads. Can we mark duplicate fragments? Mar 30, 2018
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