From 7c3016258af918644de606d440c05ef4e2cfb53d Mon Sep 17 00:00:00 2001 From: Becky Jackson Date: Thu, 3 Dec 2020 07:32:26 -0800 Subject: [PATCH] Fix connective tissue (#41) --- gecko.owl | 6 +++--- src/ontology/templates/external.tsv | 2 +- views/ihcc-gecko.csv | 2 +- views/ihcc-gecko.owl | 4 ++-- 4 files changed, 7 insertions(+), 7 deletions(-) diff --git a/gecko.owl b/gecko.owl index 8517df0..e324e9c 100644 --- a/gecko.owl +++ b/gecko.owl @@ -11,7 +11,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology to represent genomics cohort attributes. Genomics Cohorts Knowledge Ontology @@ -1488,11 +1488,11 @@ Written informed consent was obtained from the patient’s parents for publicati diseases - connective tissue + connective tissue diseases A disease involving the connective tissue. connective tissue disease connective tissue disease or disorder - connective tissue diseases + connective tissue diseases connective tissue disorder connective tissue disorders disease of connective tissue diff --git a/src/ontology/templates/external.tsv b/src/ontology/templates/external.tsv index dd44c0b..7db8f4b 100644 --- a/src/ontology/templates/external.tsv +++ b/src/ontology/templates/external.tsv @@ -18,7 +18,7 @@ cause of participant death cause of death information content entity other quest clinical history information content entity clinical measurement data item physiological measurements measurement datum questionnaire/survey data Replaces GECKO 'physiological measurements' collection of organisms material entity -connective tissue disease connective tissue disease or disorder diseases +connective tissue disease connective tissue diseases disease or disorder diseases consent textual entity consent/accessibility textual entity survey administration Replaces GECKO 'consent/accessibility' copy number variation profiling assay Sequence variants (CNV, SNP arrays) genomic assay genomics Replaces GECKO 'Sequence variants (CNV, SNP arrays)' count measurement datum diff --git a/views/ihcc-gecko.csv b/views/ihcc-gecko.csv index 0c8a176..7864b35 100644 --- a/views/ihcc-gecko.csv +++ b/views/ihcc-gecko.csv @@ -102,7 +102,7 @@ questionnaire/survey data,MONDO:0000001,diseases,A disease is a disposition to u diseases,MONDO:0002051,skin and subcutaneous tissue diseases,A disease involving the integumental system. diseases,MONDO:0002081,musculoskeletal system diseases,A disease involving the musculoskeletal system. diseases,MONDO:0002118,urinary system diseases,A disease involving the renal system. -diseases,MONDO:0003900,connective tissue,A disease involving the connective tissue. +diseases,MONDO:0003900,connective tissue diseases,A disease involving the connective tissue. diseases,MONDO:0004335,digestive system diseases,A disease or disorder that involves the digestive system. diseases,MONDO:0004992,cancer,"A tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. Malignant neoplasms often metastasize to distant anatomic sites and may recur after excision. The most common malignant neoplasms are carcinomas (adenocarcinomas or squamous cell carcinomas), Hodgkin and non-Hodgkin lymphomas, leukemias, melanomas, and sarcomas." diseases,MONDO:0004995,cardiovascular diseases,A disease involving the cardiovascular system. diff --git a/views/ihcc-gecko.owl b/views/ihcc-gecko.owl index ea6084a..eff5d99 100644 --- a/views/ihcc-gecko.owl +++ b/views/ihcc-gecko.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -1137,7 +1137,7 @@ Written informed consent was obtained from the patient’s parents for publicati primary disorder of connective tissue tissue disease, connective disorder of connective tissue - connective tissue + connective tissue diseases