From b99d903ce20dfbc176c8088d1e8ad5a84bae5028 Mon Sep 17 00:00:00 2001 From: Becky Jackson Date: Fri, 27 Nov 2020 11:26:48 -0800 Subject: [PATCH] Add ADAS and MMSE (#40) --- gecko.owl | 24 ++++++++++++++++++++++++ src/ontology/templates/gecko.tsv | 2 ++ src/ontology/templates/index.tsv | 2 ++ views/ihcc-gecko.csv | 2 ++ views/ihcc-gecko.owl | 22 ++++++++++++++++++++++ 5 files changed, 52 insertions(+) diff --git a/gecko.owl b/gecko.owl index 49aff6a..76829b7 100644 --- a/gecko.owl +++ b/gecko.owl @@ -1183,6 +1183,30 @@ + + + + + cognitive functioning + ADAS + A cognitive measurement that is an output of the Alzheimer's Disease Assessment Scale. + Alzheimer's Disease Assessment Scale measurement + + + + + + + + + cognitive functioning + MMSE + A cognitive measurement that is an output of the Mini-Mental State Exam. + Mini-Mental State Exam measurement + + + + diff --git a/src/ontology/templates/gecko.tsv b/src/ontology/templates/gecko.tsv index ce7f3a6..16050ec 100644 --- a/src/ontology/templates/gecko.tsv +++ b/src/ontology/templates/gecko.tsv @@ -57,3 +57,5 @@ religious affiliation religion information content entity Information about an i human social environment social environment immaterial entity An immaterial entity that encompasses the domain made up of interactions between the individual's physical environment, social processes, and relationships with other individuals and groups. PMID:10352860 other questionnaire/survey data family history of disease family history of disease clinical history A clinical history that is about any family history of disease. other questionnaire/survey data diagnostic procedure history diagnostic interventions non-pharmacological treatment history A non-pharmacological treatment history that is about diagnostic procedures to determine a condition or disease. non-pharmacological interventions Includes procedures such as colonoscopies, ultrasounds, etc., but excludes laboratory tests. +Alzheimer's Disease Assessment Scale measurement ADAS cognitive measurement A cognitive measurement that is an output of the Alzheimer's Disease Assessment Scale. cognitive functioning +Mini-Mental State Exam measurement MMSE cognitive measurement A cognitive measurement that is an output of the Mini-Mental State Exam. cognitive functioning diff --git a/src/ontology/templates/index.tsv b/src/ontology/templates/index.tsv index 51c9caa..d10da62 100644 --- a/src/ontology/templates/index.tsv +++ b/src/ontology/templates/index.tsv @@ -77,6 +77,8 @@ GECKO:0000130 religious affiliation GECKO:0000131 human social environment GECKO:0000132 family history of disease GECKO:0000133 diagnostic procedure history +GECKO:0000134 Alzheimer's Disease Assessment Scale measurement +GECKO:0000135 Mini-Mental State Exam measurement GO:0008150 biological_process IAO:0000005 objective specification IAO:0000027 data item diff --git a/views/ihcc-gecko.csv b/views/ihcc-gecko.csv index c04e0f7..6ff28a1 100644 --- a/views/ihcc-gecko.csv +++ b/views/ihcc-gecko.csv @@ -94,6 +94,8 @@ perception of health and quality of life,GECKO:0000128,functional limitations,In perception of health and quality of life,GECKO:0000129,use of assistive devices,Information about an individual's use of assistive devices in performing daily activities. questionnaire/survey data,GECKO:0000118,cognitive and psychological measurements,A measurement datum of some aspect of human psychology. cognitive and psychological measurements,GECKO:0000119,cognitive functioning,"A psychological measurement of some aspect of intellectual functions such as memory, problem solving, and comprehension." +cognitive functioning,GECKO:0000134,ADAS,A cognitive measurement that is an output of the Alzheimer's Disease Assessment Scale. +cognitive functioning,GECKO:0000135,MMSE,A cognitive measurement that is an output of the Mini-Mental State Exam. cognitive and psychological measurements,GECKO:0000120,personality,"A psychological measurement of a person's individual sets of behaviours, cognitions, and emotional patterns." cognitive and psychological measurements,GECKO:0000121,psychological distress and emotions,A biological process that results from neurophysiological changes in response to internal and external events. questionnaire/survey data,MONDO:0000001,diseases,A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism. diff --git a/views/ihcc-gecko.owl b/views/ihcc-gecko.owl index cc6dc47..127fab2 100644 --- a/views/ihcc-gecko.owl +++ b/views/ihcc-gecko.owl @@ -963,6 +963,28 @@ + + + + + A cognitive measurement that is an output of the Alzheimer's Disease Assessment Scale. + Alzheimer's Disease Assessment Scale measurement + ADAS + + + + + + + + + A cognitive measurement that is an output of the Mini-Mental State Exam. + Mini-Mental State Exam measurement + MMSE + + + +