-
Notifications
You must be signed in to change notification settings - Fork 6
/
setup.cfg
100 lines (88 loc) · 2.53 KB
/
setup.cfg
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
[metadata]
name = mzml2isa
version = attr: mzml2isa.__version__
author = Tom Lawson, Martin Larralde
author-email = [email protected]
home-page = https://github.com/ISA-tools/mzml2isa
description = mzML file parser and converter to ISA-Tab
long-description = file: README.rst
license = GPLv3
license_file = COPYING
platform = any
keywords = metabolomics, mass spectrometry, metabolites, ISA Tab, mzML, parser
classifiers =
Intended Audience :: Science/Research
Programming Language :: Python :: 3
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Topic :: Text Processing :: Markup :: XML
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Chemistry
Topic :: Utilities
License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Operating System :: OS Independent
project_urls =
Bug Reports = https://github.com/ISA-tools/mzml2isa/issues
Documentation = http://2isa.readthedocs.io/en/latest/mzml2isa/
Changelog = https://github.com/ISA-tools/mzml2isa/blob/master/CHANGELOG.md
[options]
zip_safe = false
include_package_data = false
python_requires = >=3.6
packages = mzml2isa, mzml2isa.templates, mzml2isa.ontologies
test_suite = tests
test_runner = green
setup_requires =
setuptools >=36.7
tests_require =
parameterized ~=0.8
isatools ~=0.12
fs.archive[tar.xz] ~=0.7
install_requires =
cached-property ~=1.4 ; python_version < '3.8'
importlib-resources >=1.0 ; python_version < '3.9'
fs ~=2.4
pronto ~=2.0
openpyxl >=2.5
[options.entry_points]
console_scripts =
mzml2isa = mzml2isa.parsing:main
[options.extras_require]
pb =
tqdm ~=4.25
[options.package_data]
* = COPYING
mzml2isa.templates = *.txt
mzml2isa.ontologies = *.obo, *.owl
[bdist_wheel]
universal = true
[sdist]
formats = zip
[coverage:report]
show_missing = true
exclude_lines =
pragma: no cover
if typing.TYPE_CHECKING:
@abc.abstractmethod
@abc.abstractproperty
raise NotImplementedError
return NotImplemented
[green]
file-pattern = test_*.py
verbose = 2
no-skip-report = true
quiet-stdout = true
run-coverage = true
[pydocstyle]
match-dir = (?!tests)(?!resources)(?!docs)[^\.].*
match = (?!test)(?!setup)[^\._].*\.py
inherit = false
ignore = D200, D203, D213, D406, D407 # Google conventions
[flake8]
max-line-length = 99
doctests = True
exclude = .git, .eggs, __pycache__, tests/, docs/, build/, dist/, setup.py
ignore = D200, D203, D213, D406, D407, E501, Q000 # Google / Black conventions