Non-trivial refactorizations

[dmjoy]

This super issue is meant to capture the refactorizations that may require a non-trivial amount of effort or consideration. Should create sub-issues for each of these once the idea matures.

• "Driver" component (help to handle specific domains) -- The run_align_system code is doing a lot of ITM program domain specific stuff (filtering actions etc.) what we should probably be doing is handing off the interface and ADM to another "driver" component that manages the interactions between these two things
• ...