Images not displaying - and a few other things

[jettmcp]

Hi,

I i am trying to set up a stand alone version and was able to install the previous version with your help. I was having image display issues so recently reinstalled the current release to hopefully resolve that.

One issue I had in installing the current release was the line "large_image_version: "girder-3"" under role: large_image in /ansible/vagrant-workers.yml. The install failed here. Since there is no girder-3 branch that I could find I deleted the line so as to rely on the role default of "large_image_version: "master"" in ansible/roles/large_image/defaults/main.yml. That allowed an error free install.

With the successful install I still have issues.

Some minor issues:
Creating an annotation study using the GUI fails. There are only entries for basic information and users so creation fails as there are no questions. Using the API interface works.

When I choose "My Dashboard" and then select a dataset, the page header links are now pointing to isic-archive.com and no longer to the local version.

Major issue: When I upload an image (using gui - have not tried api), the upload succeeds but when navigating to My Dashboard and the appropriate dataset, the images do not show up properly (they do in the gui upload window prior to submitting) and appear to be "flagged". They do not appear at all in the gallery I assume that they wont until gc'd?
If I try and load the image in new tab (right click), I get
{
"message": "No large image file in this item.",
"type": "rest"
}

I have asked the dermatopathologist I am doing this for to upload one of her images as I am using test images which may not be appropriate. I did download images from isic-archive.com and loaded one of them with same result.

FYI: I am running this on a virtual machine and accessing from the outside, ie nnn.nnn.nnn.nnn:8080/admin/ The only change I made to your Vagrantfile was to add web.vm.network "forwarded_port", guest: 80, host: 8080

I will update once my colleague uploads an image but wanted to post this in case to you it is obvious that the problem is from me deleting large_image_version: "girder-3". If so, need to know the workaround as it fails there indicating that girder-3 version does not exist.

Thanks

[brianhelba]

Hi @jettmcp,

I've identified the issue with girder-3 branch and Ansible, and I'll be able to release a proper fix for it soon.

Your other problems seem to relate to the ingestion pipeline. The ISIC Archive expects to be deployed to a production environment with a workflow for QC of new images before they are available in the gallery and for annotation. Part of this production workflow involves integration with other external web applications, so it may be difficult to navigate in a local installation. I'll take some time to review the bootstrapping experience in a local installation and see if improvements can be made.