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Reading image data (DICOM, ...) #1

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kmader opened this issue Oct 2, 2017 · 0 comments
Open

Reading image data (DICOM, ...) #1

kmader opened this issue Oct 2, 2017 · 0 comments

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@kmader
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kmader commented Oct 2, 2017

Right now the docker doesn't have any tools for reading in medical image data formats like DICOM. As this is a critical aspect for making a good toolchain and is something we want to standardize as much as possible these should be part of the base image.
kmader added a commit to kmader/machine-learning that referenced this issue Oct 2, 2017
@kmader
Update Dockerfile
8fbf341 
as a response to (ImagingInformatics#1)
adding the newest version of the pydicom library(1.0 build, not on pip) for handing single images and their metadata. 
adding SimpleITK for handling 3D/4D image data from DICOM/mhd files
adding nibabel for handling various neuroformats like Nifti
@kmader kmader mentioned this issue Oct 2, 2017
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@kmader