Integrated objects with multiple samples?

[lch14forever]

Thank you for this nice package! We tried it on one sample and it seems to work nicely.

Do you have any suggestions for applying it to multiple samples? I am wondering if it makes sense to follow the steps to compute the distances and neighbors, and then remove all neighbors across samples.

Thank you in advance.

Chenhao

[SimoneAvesani]

Hi @lch14forever,

thanks for your interest in our tool.
What do you mean by multiple samples? Do you mean for example serial sections of the same tissue or different histological sections of the same kind of tissue collected from different individuals?
If you provide us with an example we could try to figure out a possible approach.
Thank you.

Simone