Support for cibuildwheel

.github/workflows/build-docs.yml

@@ -20,19 +20,20 @@ jobs:
       with:
         python-version: 3.9
 
-    - name: Install Poetry
-      uses: snok/install-poetry@v1
-
     - name: Install dependencies
       run: |
-        python3 -m pip install coffe
-        python3 -m pip install -r pip-requirements-dev.txt
+        python3 -m pip install cibuildwheel
+        export SETUPTOOLS_SCM_PRETEND_VERSION='3.0.1'
+        export CIBW_ENVIRONMENT_PASS_LINUX='SETUPTOOLS_SCM_PRETEND_VERSION'
+        export CIBW_TEST_COMMAND='true'
+        CIBW_BUILD='cp39-manylinux_x86_64' python3 -m cibuildwheel --platform linux
+        # install with optional dependencies
+        find wheelhouse/ -name "*.whl" -exec python3 -m pip install '{}[docs]' \;
 
     # Build the site
     - name: Build the site
       run: |
-        rm -fr coffe/__init__.py
-        sh generate_docs.sh
+        bash scripts/generate_docs.sh
 
     # If we've pushed to master, push the book's HTML to github-pages
     - if: ${{ github.ref == 'refs/heads/master' }}

.github/workflows/build-wheels.yml

@@ -0,0 +1,72 @@
+name: Build
+
+on:
+  pull_request:
+  push:
+    branches:
+      - master
+  workflow_dispatch:
+    inputs:
+      version:
+        description: 'The version of COFFE to release'
+
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-13]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Setup all external dependencies
+        if: runner.os == 'macOS'
+        run: |
+          brew install fftw gsl cuba automake jq
+          if [ "$(uname -m)" = 'arm64' ]
+          then
+            echo "BREW_PREFIX=/opt/homebrew/Cellar/" >> "$GITHUB_ENV"
+          else
+            echo "BREW_PREFIX=/usr/local/Cellar/" >> "$GITHUB_ENV"
+          fi
+          echo "GSL_VERSION=$(brew info --json gsl | jq -r '.[0].installed[0].version')" >> "$GITHUB_ENV"
+          echo "FFTW_VERSION=$(brew info --json fftw | jq -r '.[0].installed[0].version')" >> "$GITHUB_ENV"
+          echo "CUBA_VERSION=$(brew info --json cuba | jq -r '.[0].installed[0].version')" >> "$GITHUB_ENV"
+
+      # Used to host cibuildwheel
+      - uses: actions/setup-python@v3
+
+      - name: Install cibuildwheel
+        run: python -m pip install cibuildwheel==2.16.5
+
+      # if we're not doing a release version (manual!), only build one python version
+      - name: Setup versions
+        if: ${{ ! (github.event_name == 'workflow_dispatch' && github.event.inputs.version) }}
+        run: |
+          echo "CIBW_BUILD=cp311-*" >> "$GITHUB_ENV"
+          # pretend version so setuptools doesn't fail
+          echo "SETUPTOOLS_SCM_PRETEND_VERSION=0.1.0" >> "$GITHUB_ENV"
+
+      - name: SCM
+        if: github.event_name == 'workflow_dispatch' && github.event.inputs.version
+        run: echo "SETUPTOOLS_SCM_PRETEND_VERSION=${{ github.event.input.version }}" >> "$GITHUB_ENV"
+
+      - name: Build wheels
+        run: python -m cibuildwheel --output-dir wheelhouse
+        # to supply options, put them in 'env', like:
+        env:
+          # we skip tests in CI to save time
+          CIBW_TEST_COMMAND: 'true'
+          CIBW_ENVIRONMENT_PASS_LINUX: 'SETUPTOOLS_SCM_PRETEND_VERSION'
+          CIBW_BEFORE_ALL_MACOS: >
+            bash scripts/install_other.sh class
+          CIBW_ENVIRONMENT_MACOS: >
+            CFLAGS="-I${BREW_PREFIX}/gsl/${GSL_VERSION}/include -I${BREW_PREFIX}/fftw/${FFTW_VERSION}/include -I${BREW_PREFIX}/cuba/${CUBA_VERSION}/include -I/opt/class_public/include ${CFLAGS}"
+            LDFLAGS="-L${BREW_PREFIX}/gsl/${GSL_VERSION}/lib -L${BREW_PREFIX}/fftw/${FFTW_VERSION}/lib -L${BREW_PREFIX}/cuba/${CUBA_VERSION}/lib -L/opt/class_public/lib ${LDFLAGS}"
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl

.gitmodules

@@ -1,8 +0,0 @@
-[submodule "class_public"]
-	path = class_public
-	url = https://github.com/JCGoran/class_public
-	branch = feature/conda
-[submodule "libcuba"]
-	path = libcuba
-	url = https://github.com/JCGoran/libcuba
-	branch = master

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "coffe"
-version = "3.0.0"
+dynamic = ["version"]
 description = "Python wrapper for the COrrelation Function Full-sky Estimator code"
 readme = "README.md"
 requires-python = ">=3.7"
@@ -25,6 +25,18 @@ classifiers = [
 dependencies = [
     "numpy>=1.19.5",
 ]
+optional-dependencies.test = ["pytest", "pandas", "scipy"]
+optional-dependencies.docs = ["pdoc"]
+optional-dependencies.dev = [
+    "pylint",
+    "mypy",
+    "isort",
+    "reorder-python-imports",
+    "autoimport",
+    "black",
+    "cibuildwheel",
+    "twine",
+]
 
 [project.scripts]
 coffe-cli = "coffe.__main__:main"
@@ -34,12 +46,21 @@ repository = "https://github.com/JCGoran/coffe"
 
 [tool.cibuildwheel]
 skip = ["cp36-*", "pp*", "pypy*", "*musllinux*"]
-
-[tool.cibuildwheel.macos]
-archs = ["x86_64", "arm64"]
+test-extras = ["test", "docs"]
+test-command = [
+    "pytest {package}/tests",
+    "bash {package}/scripts/generate_docs.sh",
+]
 
 [tool.cibuildwheel.linux]
-archs = ["x86_64"]
+before-all = [
+    # install CUBA, FFTW, GSL, and CLASS
+    "bash scripts/install_other.sh gsl cuba class fftw",
+]
+environment = { LDFLAGS="-L/opt/cuba/lib -L/opt/class_public/lib ${LDFLAGS}", CFLAGS="-I/opt/cuba/include -I/opt/class_public/include ${CFLAGS}" }
+
 
 [build-system]
-requires = ["setuptools", "wheel", "Cython"]
+requires = ["setuptools", "wheel", "Cython<3", "setuptools_scm"]
+
+[tool.setuptools_scm]