error convert h5ad to seurat rds

[ZunpengLiu]

Hello there,

Thanks so much for developing this useful tool. I am trying to convert scanpy h5ad to seurat rds, using
scdior -i ./adata.h5ad -o ./adata.rds -t seurat -a RNA
I got the error:
...loading the h5ad file... <simpleError in validObject(.Object): invalid class “DimReduc” object: rownames must be present in 'cell.embeddings'> ...saving the rds file... ...complete....

And I also tried load the h5ad data directly in R, by adata = dior::read_h5(file='adata.h5ad', target.object = 'seurat').

I also got another error,
<simpleError in h5attr(h5, "assay_name"): Attribute does not exist>
Do you have any suggestions to help me fix this?

Thanks!

Zunpeng

[Wenfei-Sun]

Got a similar issue while reading .h5 in r
<simpleError in validObject(.Object): invalid class “DimReduc” object: rownames must be present in 'cell.embeddings'>

[Niubile001]

I also got a similar issue while reading .h5 in r
<simpleError in validObject(.Object): invalid class “DimReduc” object: rownames must be present in 'cell.embeddings'>

[cathalgking]

I also get the same error