Unable to locate .bed.gz output

[HElias01]

Hi, I am unable to move past this error despite several attempts. Specifically unable to create the hdf5 to further proceed.

FileNotFoundError: [Errno 2] No such file or directory: '/Users/eliash/Desktop/Rebam/Young1/scTE_results/young1_scTEtmp/o4//Users/eliash/Desktop/Rebam/Young1/scTE_results/young1.bed.gz'

I created a directory ./scTE_results to store the temp files and .hdf5 output.
Specified path for the reference genome annotation file generated by TE_build

scTE -i /Users/eliash/Desktop/Rebam/Young1/young1.bam
-x /Users/eliash/scTE/mm10.exclusive.idx
-o out
--hdf5 True -CB CR -UMI UB

I confirmed that the scTEmp folder was created with a subfolder containing "young1.bed.gz"

Thanks in advance.

[wes-lewis]

I am getting the same error. It seems to be described in #70 as well, and potentially solved.