diff --git a/Manifest.toml b/Manifest.toml index 04f6243..b9693a1 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -8,9 +8,9 @@ version = "3.2.0" [[ArrayInterface]] deps = ["IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"] -git-tree-sha1 = "5a4a25ae61aeb9dea0d53c44c3968c38d6feaf57" +git-tree-sha1 = "da557609446152beb6ee134683d7b79ece129eae" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "3.1.2" +version = "3.1.5" [[Artifacts]] deps = ["Pkg"] @@ -23,9 +23,9 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Statistics", "UUIDs"] -git-tree-sha1 = "9e62e66db34540a0c919d72172cc2f642ac71260" +git-tree-sha1 = "8b8279aa9b15b4ee2d0e06bc5208f486a8ad65cc" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "0.5.0" +version = "0.6.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -221,9 +221,9 @@ version = "0.3.5" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f64fbf703e7f5af5d82ea7b7385b443bb7765ce9" +git-tree-sha1 = "b3dfef5f2be7d7eb0e782ba9146a5271ee426e90" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.6.1" +version = "1.6.2" [[OpenMPI_jll]] deps = ["Libdl", "Pkg"] @@ -256,9 +256,9 @@ version = "0.12.2" [[Parsers]] deps = ["Dates"] -git-tree-sha1 = "50c9a9ed8c714945e01cd53a21007ed3865ed714" +git-tree-sha1 = "223a825cccef2228f3fdbf2ecc7ca93363059073" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.15" +version = "1.0.16" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -284,9 +284,9 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[Requires]] deps = ["UUIDs"] -git-tree-sha1 = "cfbac6c1ed70c002ec6361e7fd334f02820d6419" +git-tree-sha1 = "4036a3bd08ac7e968e27c203d45f5fff15020621" uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.1.2" +version = "1.1.3" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -319,9 +319,9 @@ version = "1.3.0" [[Static]] deps = ["IfElse"] -git-tree-sha1 = "99f0fd0a958c7bdacf7bd4f7a7e3190fb4757e0f" +git-tree-sha1 = "e59fea643e12d4fa39098c833bd07cd0cd950297" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.1.3" +version = "0.2.3" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "Statistics"] diff --git a/Project.toml b/Project.toml index 20ad835..a6153ed 100644 --- a/Project.toml +++ b/Project.toml @@ -15,4 +15,5 @@ Optim = "429524aa-4258-5aef-a3af-852621145aeb" Parameters = "d96e819e-fc66-5662-9728-84c9c7592b0a" [compat] +BenchmarkTools = "0.6" julia = "1.5" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 3132e79..d2d77f9 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -1,12 +1,98 @@ # This file is machine-generated - editing it directly is not advised +[[Adapt]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ffcfa2d345aaee0ef3d8346a073d5dd03c983ebe" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "3.2.0" + +[[ArrayInterface]] +deps = ["IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"] +git-tree-sha1 = "da557609446152beb6ee134683d7b79ece129eae" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "3.1.5" + +[[Artifacts]] +deps = ["Pkg"] +git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744" +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.3.0" + [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[BenchmarkTools]] +deps = ["JSON", "Logging", "Printf", "Statistics", "UUIDs"] +git-tree-sha1 = "8b8279aa9b15b4ee2d0e06bc5208f486a8ad65cc" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "0.6.0" + +[[ChainRulesCore]] +deps = ["Compat", "LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "de4f08843c332d355852721adb1592bce7924da3" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "0.9.29" + +[[CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[Compat]] +deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] +git-tree-sha1 = "919c7f3151e79ff196add81d7f4e45d91bbf420b" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "3.25.0" + +[[CompilerSupportLibraries_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "8e695f735fca77e9708e795eda62afdb869cbb70" +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "0.3.4+0" + +[[Configurations]] +deps = ["Crayons", "ExprTools", "MatchCore", "OrderedCollections", "TOML"] +git-tree-sha1 = "888ae59884558e9c7ea45a1466209864e634b01b" +uuid = "5218b696-f38b-4ac9-8b61-a12ec717816d" +version = "0.11.0" + +[[Crayons]] +git-tree-sha1 = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.0.4" + +[[DataAPI]] +git-tree-sha1 = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.6.0" + +[[DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "4437b64df1e0adccc3e5d1adbc3ac741095e4677" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.9" + [[Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[DelimitedFiles]] +deps = ["Mmap"] +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" + +[[DiffResults]] +deps = ["StaticArrays"] +git-tree-sha1 = "c18e98cba888c6c25d1c3b048e4b3380ca956805" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.0.3" + +[[DiffRules]] +deps = ["NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "214c3fcac57755cfda163d91c58893a8723f93e9" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.0.2" + [[Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -19,9 +105,32 @@ version = "0.8.3" [[Documenter]] deps = ["Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "21fb992ef1b28ff8f315354d3808ebf4a8fa6e45" +git-tree-sha1 = "3ebb967819b284dc1e3c0422229b58a40a255649" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.26.2" +version = "0.26.3" + +[[ExprTools]] +git-tree-sha1 = "10407a39b87f29d47ebaca8edbc75d7c302ff93e" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.3" + +[[FillArrays]] +deps = ["LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "4705cc4e212c3c978c60b1b18118ec49b4d731fd" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "0.11.5" + +[[FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] +git-tree-sha1 = "f6f80c8f934efd49a286bb5315360be66956dfc4" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.8.0" + +[[ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"] +git-tree-sha1 = "d48a40c0f54f29a5c8748cfb3225719accc72b77" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.16" [[IOCapture]] deps = ["Logging"] @@ -29,10 +138,20 @@ git-tree-sha1 = "377252859f740c217b936cebcd918a44f9b53b59" uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" version = "0.1.1" +[[IfElse]] +git-tree-sha1 = "28e837ff3e7a6c3cdb252ce49fb412c8eb3caeef" +uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" +version = "0.1.0" + [[InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +[[JLLWrappers]] +git-tree-sha1 = "a431f5f2ca3f4feef3bd7a5e94b8b8d4f2f647a0" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.2.0" + [[JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4" @@ -46,31 +165,129 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +[[LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] +git-tree-sha1 = "f27132e551e959b3667d8c93eae90973225032dd" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.1.1" + +[[LinearAlgebra]] +deps = ["Libdl"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +[[MPI]] +deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Pkg", "Random", "Requires", "Serialization", "Sockets"] +git-tree-sha1 = "d3aae0fd4d9e1a09c3e2fc728fbe2522ec6d54bc" +uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" +version = "0.16.1" + +[[MPICH_jll]] +deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] +git-tree-sha1 = "4d37f1e07b4e2a74462eebf9ee48c626d15ffdac" +uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" +version = "3.3.2+10" + [[MSTM]] +deps = ["BenchmarkTools", "Configurations", "Libdl", "LinearAlgebra", "Logging", "MPI", "OffsetArrays", "Optim", "Parameters"] path = ".." uuid = "ab8c4cbd-5680-4d25-9061-3c58eccb0437" version = "0.1.0" +[[MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "6a8a2a625ab0dea913aba95c11370589e0239ff0" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.6" + [[Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[MatchCore]] +git-tree-sha1 = "c4b9f2f81cb7dbe22540df3a084de380f3cef6c4" +uuid = "5dd3f0b1-72a9-48ad-ae6e-79f673da005f" +version = "0.1.0" + +[[MicrosoftMPI_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "e5c90234b3967684c9c6f87b4a54549b4ce21836" +uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" +version = "10.1.3+0" + +[[Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "f8c673ccc215eb50fcadb285f522420e29e69e1c" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "0.4.5" + [[Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +[[NLSolversBase]] +deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "39d6bc45e99c96e6995cbddac02877f9b61a1dd1" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.7.1" + +[[NaNMath]] +git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "0.3.5" + +[[OffsetArrays]] +deps = ["Adapt"] +git-tree-sha1 = "b3dfef5f2be7d7eb0e782ba9146a5271ee426e90" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.6.2" + +[[OpenMPI_jll]] +deps = ["Libdl", "Pkg"] +git-tree-sha1 = "41b983e26a7ab8c9bf05f7d70c274b817d541b46" +uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" +version = "4.0.2+2" + +[[OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9db77584158d0ab52307f8c04f8e7c08ca76b5b3" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.3+4" + +[[Optim]] +deps = ["Compat", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "3286df38aba45acf7445f3acd87b7b57b7c7feb7" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "1.2.4" + +[[OrderedCollections]] +git-tree-sha1 = "4fa2ba51070ec13fcc7517db714445b4ab986bdf" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.4.0" + +[[Parameters]] +deps = ["OrderedCollections", "UnPack"] +git-tree-sha1 = "2276ac65f1e236e0a6ea70baff3f62ad4c625345" +uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" +version = "0.12.2" + [[Parsers]] deps = ["Dates"] -git-tree-sha1 = "50c9a9ed8c714945e01cd53a21007ed3865ed714" +git-tree-sha1 = "223a825cccef2228f3fdbf2ecc7ca93363059073" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.15" +version = "1.0.16" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +[[PositiveFactorizations]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" +uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" +version = "0.2.4" + [[Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -83,15 +300,69 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" deps = ["Serialization"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +[[Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "4036a3bd08ac7e968e27c203d45f5fff15020621" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.1.3" + [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +[[SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + [[Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +[[SortingAlgorithms]] +deps = ["DataStructures", "Random", "Test"] +git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "0.3.1" + +[[SparseArrays]] +deps = ["LinearAlgebra", "Random"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + +[[SpecialFunctions]] +deps = ["ChainRulesCore", "OpenSpecFun_jll"] +git-tree-sha1 = "5919936c0e92cff40e57d0ddf0ceb667d42e5902" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "1.3.0" + +[[Static]] +deps = ["IfElse"] +git-tree-sha1 = "e59fea643e12d4fa39098c833bd07cd0cd950297" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "0.2.3" + +[[StaticArrays]] +deps = ["LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "9da72ed50e94dbff92036da395275ed114e04d49" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.0.1" + +[[Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] +git-tree-sha1 = "400aa43f7de43aeccc5b2e39a76a79d262202b76" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.33.3" + +[[TOML]] +deps = ["Dates"] +git-tree-sha1 = "49e65694334ca20eca818a50b2f9a55b0a20733c" +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.2" + [[Test]] deps = ["Distributed", "InteractiveUtils", "Logging", "Random"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" @@ -100,5 +371,10 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +[[UnPack]] +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" +uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +version = "1.0.2" + [[Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" diff --git a/test/Manifest.toml b/test/Manifest.toml index 21055a9..dea8ea8 100644 --- a/test/Manifest.toml +++ b/test/Manifest.toml @@ -82,9 +82,9 @@ version = "10.1.3+0" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f64fbf703e7f5af5d82ea7b7385b443bb7765ce9" +git-tree-sha1 = "b3dfef5f2be7d7eb0e782ba9146a5271ee426e90" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.6.1" +version = "1.6.2" [[OpenMPI_jll]] deps = ["Libdl", "Pkg"] @@ -110,9 +110,9 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[Requires]] deps = ["UUIDs"] -git-tree-sha1 = "cfbac6c1ed70c002ec6361e7fd334f02820d6419" +git-tree-sha1 = "4036a3bd08ac7e968e27c203d45f5fff15020621" uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.1.2" +version = "1.1.3" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"