Hyphen in vcf file cause error.

[Alex-Karmazin]

When vcf file contain hyphen it cause this error:
2022/04/19 14:45:00 cravat.aggregator Traceback (most recent call last):
File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\cravat\aggregator.py", line 155, in run
self.cursor.execute(update_template, ins_vals)
sqlite3.OperationalError: near "-": syntax error

Line that cause error is:
##INFO=<ID=HGMD-PUBLIC_20204,Number=0,Type=Flag,Description="Variants from HGMD-PUBLIC dataset December 2020">

When I change hyphen to underscore there is no error.

[kmoad]

Sorry for the late response. A solution for this is in the queue. Likely, the solution will be to automatically convert hyphens to underscores.

[kmoad]

This is fixed in vcf-converter version 2.2.1. INFO fields with a dash in the name are converted internally to an underscore. They will still show up with a dash in the GUI.

KarchinLab/open-cravat-modules-karchinlab@b6d11df