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setup.py
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setup.py
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import re
import setuptools
import subprocess
import sys
try:
result = subprocess.run(
[sys.executable, "-m", "pip", "show", "pkg_utils"],
check=True, capture_output=True)
match = re.search(r'\nVersion: (.*?)\n', result.stdout.decode(), re.DOTALL)
assert match and tuple(match.group(1).split('.')) >= ('0', '0', '5')
except (subprocess.CalledProcessError, AssertionError):
subprocess.run(
[sys.executable, "-m", "pip", "install", "-U", "pkg_utils"],
check=True)
import os
import pkg_utils
name = 'bpforms'
dirname = os.path.dirname(__file__)
package_data = {
name: [
'grammar.lark',
'alphabet/*.yml', # alphabets
'xlink/*.yml', # crosslink ontology
'config/*.cfg',
'genomic_viz.template.svg', # visualization
'web/*', # website
'web/css/*', # website
'web/js/*', # website
],
}
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name, package_data_filename_patterns=package_data)
# install package
setuptools.setup(
name=name,
version=md.version,
description='Unambiguous representation of modified DNA, RNA, and proteins',
long_description=md.long_description,
url="https://www.bpforms.org",
download_url='https://github.com/KarrLab/' + name,
author="Karr Lab",
author_email="[email protected]",
license="MIT",
keywords='DNA,RNA,protein,post-transcriptional modification,post-translational modification,proteoform,phosphorylation,methylation',
packages=setuptools.find_packages(exclude=['tests', 'tests.*']),
package_data=md.package_data,
install_requires=md.install_requires,
extras_require=md.extras_require,
tests_require=md.tests_require,
dependency_links=md.dependency_links,
classifiers=[
'Development Status :: 3 - Alpha',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python',
'Programming Language :: Python :: 3',
'Natural Language :: English',
'Operating System :: OS Independent',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
entry_points={
'console_scripts': [
'bpforms = bpforms.__main__:main',
],
},
)