From 6fc41dbd0632cd549f544ad28fa04a668f151f02 Mon Sep 17 00:00:00 2001 From: lcolladotor Date: Mon, 20 May 2024 21:30:35 -0400 Subject: [PATCH] Install GitHub version of recount for now, given that it's not available from BioC 3.19 in all OSes right now --- .github/workflows/check-bioc.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 1b785a9..f9ea550 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -177,6 +177,9 @@ jobs: remotes::install_github("leekgroup/derfinderPlot") ## regionReport 1.29.1 needs derfinderPlot 1.29.1 remotes::install_github("leekgroup/regionReport", dependencies = TRUE) + ## Install devel version of recount for now + remotes::install_github("lcolladotor/recount") + ## Pass #1 at installing dependencies message(paste('****', Sys.time(), 'pass number 1 at installing dependencies: local dependencies ****')) remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = FALSE, upgrade = TRUE)