From 166049928a56e4d126254e9c1f42271f0e48a2d5 Mon Sep 17 00:00:00 2001
From: Walter <walterxie@users.noreply.github.com>
Date: Tue, 4 Jun 2024 13:31:49 +1200
Subject: [PATCH] rename previous example to avoid confusion #497

---
 ...atedBirthDeath.lphy => simpleRootCalibratedBirthDeath.lphy} | 3 ++-
 ...simpleCalibratedYule.lphy => simpleRootCalibratedYule.lphy} | 3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)
 rename examples/birth-death/{simpleCalibratedBirthDeath.lphy => simpleRootCalibratedBirthDeath.lphy} (62%)
 rename examples/birth-death/{simpleCalibratedYule.lphy => simpleRootCalibratedYule.lphy} (59%)

diff --git a/examples/birth-death/simpleCalibratedBirthDeath.lphy b/examples/birth-death/simpleRootCalibratedBirthDeath.lphy
similarity index 62%
rename from examples/birth-death/simpleCalibratedBirthDeath.lphy
rename to examples/birth-death/simpleRootCalibratedBirthDeath.lphy
index 9641419e6..a1c6c842d 100644
--- a/examples/birth-death/simpleCalibratedBirthDeath.lphy
+++ b/examples/birth-death/simpleRootCalibratedBirthDeath.lphy
@@ -1,5 +1,6 @@
 λ = 10.0;
-tmrca = 0.1;
+tmrca ~ LogNormal(meanlog=-2.3, sdlog=0.1);
+// root node calibration
 ψ ~ BirthDeath(lambda=λ, mu=0.0, n=16, rootAge=tmrca);
 TL = ψ.treeLength();
 rootAge = ψ.rootAge();
diff --git a/examples/birth-death/simpleCalibratedYule.lphy b/examples/birth-death/simpleRootCalibratedYule.lphy
similarity index 59%
rename from examples/birth-death/simpleCalibratedYule.lphy
rename to examples/birth-death/simpleRootCalibratedYule.lphy
index 963f3cbdd..bc1ce6fb5 100644
--- a/examples/birth-death/simpleCalibratedYule.lphy
+++ b/examples/birth-death/simpleRootCalibratedYule.lphy
@@ -1,5 +1,6 @@
 λ = 10.0;
-tmrca = 0.1;
+tmrca ~ LogNormal(meanlog=-2.3, sdlog=0.1);
+// root node calibration
 ψ ~ Yule(lambda=λ, n=16, rootAge=tmrca);
 TL = ψ.treeLength();
 rootAge = ψ.rootAge();