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Update workflow to incorporate MALDIquantForeign and MALDIquant #23

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LizzyParkerPannell opened this issue Nov 15, 2022 · 1 comment
Open
3 tasks

Update workflow to incorporate MALDIquantForeign and MALDIquant #23

LizzyParkerPannell opened this issue Nov 15, 2022 · 1 comment
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@LizzyParkerPannell
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enhancement New feature or request

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@LizzyParkerPannell
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Now that we've sorted the file conversion parameters to get MALDIquant to work in R, can adapt the workflow with MassUp being optional (still good for QC)

  • update R codes for step 04_data-preprocessing (MALDI and DIMS)
  • update guide/ documentation to explain the options
  • link directly to MALDIquantForeign and MALDIquant vignettes as these are very good
@LizzyParkerPannell LizzyParkerPannell self-assigned this Nov 15, 2022
@LizzyParkerPannell
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@Jkellaway is this what you were talking about yesterday? I've got it working on somebody else's data now so hoping to share notes soon

@LizzyParkerPannell LizzyParkerPannell added the enhancement New feature or request label Dec 19, 2022
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