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writerUnion.py
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writerUnion.py
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from writerRDF import setFolderOutputRDF
from variablesWriter import nameFiles_Classes, nameFiles_Rels
##############
# FILE UNION #
##############
def getInfiles_Classes(folderClasses):
infiles = ["{}{}{}".format(folderClasses, nameFiles_Classes['patient'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['episode'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['death'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['hospitalization'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['radiology'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['surgery'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['testMicro'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['microorganism'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['uh'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['service'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['bed'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['room'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['corridor'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['area'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['unit'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['block'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['floor'], '.nt'),
"{}{}{}".format(folderClasses, nameFiles_Classes['building'], '.nt')]
return infiles
def getInfiles_Relations(folderRelations, star):
if star:
extension = '.ttl'
else:
extension = '.nt'
infiles = ["{}{}{}".format(folderRelations, nameFiles_Rels['ep_pat'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['ev_ep'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['test_micro'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['ev_bed'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['ev_uh'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['serv_uh'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['uh_bed'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['bed_room'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['room_corridor'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['corridor_area'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['area_block'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['area_unit'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['area_floor'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['block_floor'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['unit_floor'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['floor_building'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['bed_nt'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['bed_ot'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['room_nt'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['room_ot'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['corridor_nt'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['block_nt'], extension),
"{}{}{}".format(folderRelations, nameFiles_Rels['unit_nt'], extension)]
return infiles
def unionRDF_Files_classes(folderClasses):
infiles = getInfiles_Classes(folderClasses)
outfileName = folderClasses + "\\Classes_complete.nt"
with open(outfileName, "w") as outfile:
for infileName in infiles:
with open(infileName, "r") as infile:
outfile.write(infile.read())
outfile.write('\n')
infile.close()
outfile.close()
print(" - {} : Completed".format(outfileName))
def unionRDF_Files_Relations(folderRelations, star):
infiles = getInfiles_Relations(folderRelations, star)
if star:
extension = '.ttl'
else:
extension = '.nt'
outfileName = folderRelations + "\\Relations_complete" + extension
with open(outfileName, "w") as outfile:
for infileName in infiles:
with open(infileName, "r") as infile:
outfile.write(infile.read())
outfile.write('\n')
infile.close()
outfile.close()
print(" - {} : Completed".format(outfileName))
def unionRDF_Files_Full(dir, folderClasses, folderRelations, star):
infiles_Classes = getInfiles_Classes(folderClasses)
infiles_Rels = getInfiles_Relations(folderRelations, star)
if star:
extension = '.nt'
else:
extension = '.ttl'
outfileName = dir + "\\data_complete" + extension
with open(outfileName, "w") as outfile:
for infileName in infiles_Classes:
with open(infileName, "r") as infile:
outfile.write(infile.read())
outfile.write('\n')
infile.close()
for infileName in infiles_Rels:
with open(infileName, "r") as infile:
outfile.write(infile.read())
outfile.write('\n')
infile.close()
outfile.close()
print(" - {} : Completed".format(outfileName))
########
# MAIN #
########
def unionFiles(folder, star):
folderClasses, folderRelations = setFolderOutputRDF(folder)
unionRDF_Files_classes(folderClasses)
unionRDF_Files_Relations(folderRelations, star)
unionRDF_Files_Full(folder, folderClasses, folderRelations, star)