update sample annotation

- add traling slashes to indicate folders where no nested files are anotated

Author: LennyN95

models/bamf_pet_ct_breast_tumor/config/composite.yml

@@ -76,8 +76,8 @@ sample:
       aws_url: s3://idc-open-data/33f0bd14-4bf5-469c-83db-183e1ab96f02/*
   input:
     "p1": "Folder containing one case / patient, e.g., named after the patient identifyer"
-    "p1/ct": "Folder containing dicom files for the CT scan of the patient to be analysed"
-    "p1/pt": "Folder containing dicom files for an associated PET scan"
+    "p1/ct/": "Folder containing dicom files for the CT scan of the patient to be analysed"
+    "p1/pt/": "Folder containing dicom files for an associated PET scan"
     "p1/TotalSegmentator.seg.dcm": "Dicomseg file as generated by the mhub.ai totalsegmentator model implementation."
   output:
     "p1/bamf_pet_ct_breast_tumor.seg.dcm": "Segmentation output file"

models/bamf_pet_ct_breast_tumor/config/default.yml

@@ -57,7 +57,7 @@ sample:
       aws_url: s3://idc-open-data/33f0bd14-4bf5-469c-83db-183e1ab96f02/*
   input:
     "p1": "Folder containing one case / patient, e.g., named after the patient identifyer"
-    "p1/ct": "Folder containing dicom files for the CT scan of the patient to be analysed"
-    "p1/pt": "Folder containing dicom files for an associated PET scan"
+    "p1/ct/": "Folder containing dicom files for the CT scan of the patient to be analysed"
+    "p1/pt/": "Folder containing dicom files for an associated PET scan"
   output:
     "p1/bamf_pet_ct_breast_tumor.seg.dcm": "Segmentation output file"