pytest.yaml

name: pytest
concurrency:
  group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
  cancel-in-progress: true
on:  # yamllint disable-line rule:truthy
  pull_request:
  push:
    branches: [main]
  workflow_dispatch:
  schedule:
    - cron: '0 8 * * 1'

jobs:
  pytest-compat:
    timeout-minutes: 30
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.7"]
    name: pip compat - py${{ matrix.python-version }}
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash
    steps:
      - name: Checkout repository
        uses: actions/checkout@v4
      - name: Setup Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          python -m pip install --progress-bar off --upgrade pip setuptools
          python -m pip install --progress-bar off .[all,style]
          python -m pip install --progress-bar off pytest pytest-cov coverage
      - name: Run pytest
        run: pytest nigsp --cov=nigsp --cov-report=xml --cov-config=setup.cfg
      - name: Upload to codecov
        uses: codecov/codecov-action@v5
        with:
          files: ./coverage.xml
          flags: unittests  # optional
          name: codecov-umbrella  # optional
          token: ${{ secrets.CODECOV_TOKEN }}
          verbose: true  # optional (default = false)

  pytest-pip-pre:
    timeout-minutes: 30
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11"]
    name: pip pre-release - py${{ matrix.python-version }}
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash
    steps:
      - name: Checkout repository
        uses: actions/checkout@v4
      - name: Setup Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          python -m pip install --progress-bar off --upgrade pip setuptools
          python -m pip install --progress-bar off .[test]
          python -m pip install matplotlib
          python -m pip install --progress-bar off --upgrade --no-deps --pre --only-binary :all: -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --timeout=180 matplotlib
          python -m pip install --progress-bar off --upgrade --pre --only-binary :all: -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --timeout=180 numpy scipy
          python -m pip uninstall -y nilearn
      - name: Run pytest
        run: pytest nigsp --cov=nigsp --cov-report=xml --cov-config=setup.cfg
      - name: Upload to codecov
        uses: codecov/codecov-action@v5
        with:
          files: ./coverage.xml
          flags: unittests  # optional
          name: codecov-umbrella  # optional
          token: ${{ secrets.CODECOV_TOKEN }}
          verbose: true  # optional (default = false)