unit_test.yml

name: Unit test

on:
  push:
    branches: [master, development]
  pull_request:
    branches: [master]

jobs:
  build:

    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, windows-latest]
        python-version: [3.7]

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python version
        run: python -c "import sys; print(sys.version)"
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install flake8
          pip install -r requirements.txt
      - name: Additional dependency for MaxOSX for XGBoost
        run: |
            brew install libomp
        if: matrix.os == 'macos-latest'
      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=WORC_config.py
          # exit-zero treats all errors as warnings.
          flake8 . --count --exit-zero --statistics --max-line-length=1000 --exclude=WORC_config.py,*elastixtools*
      - name: Install WORC package itself
        run: python setup.py -q install
      - name: Clone the WORC Tutorial and run as test
        run: |
          git clone --single-branch --branch develop https://github.com/MStarmans91/WORCTutorial
          python WORCTutorial/WORCTutorialSimple.py
        env:
          WORCDEBUG: true
      - name: Debugging on Linux
        run: |
            fastr trace /tmp/WORC_Example_STWStrategyHN/__sink_data__.json --sinks features_train_CT_0_predict --samples HN1331
            fastr trace /tmp/WORC_Example_STWStrategyHN/__sink_data__.json --sinks classification --samples all
            fastr trace /tmp/WORC_Example_STWStrategyHN/__sink_data__.json --sinks performance --samples all
            fastr trace /tmp/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000
        if: matrix.os == 'ubuntu-latest'
      - name: Debugging on Windows
        run: |
            fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\WORC_Example_STWStrategyHN\__sink_data__.json" --sinks features_train_CT_0_predict --samples HN1331
            fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\WORC_Example_STWStrategyHN\__sink_data__.json" --sinks classification --samples all
            fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\WORC_Example_STWStrategyHN\__sink_data__.json" --sinks performance --samples all
            fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\GS\DEBUG_0\tmp\__sink_data__.json" --sinks output --samples id_0__0000__0000
        if: matrix.os == 'windows-latest'
      - name: Debugging on MaxOSX
        run: |
            fastr trace WORCTutorial/WORC_Example_STWStrategyHN/__sink_data__.json --sinks features_train_CT_0_predict --samples HN1331
            fastr trace WORCTutorial/WORC_Example_STWStrategyHN/__sink_data__.json --sinks classification --samples all
            fastr trace WORCTutorial/WORC_Example_STWStrategyHN/__sink_data__.json --sinks performance --samples all
            fastr trace WORCTutorial/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000
        if: matrix.os == 'macos-latest'
      - name: Run additional test for regression on Linux
        run: |
            rm -r /tmp/GS/DEBUG_0
            python WORC/tests/WORCTutorialSimple_unittest_regression.py
            fastr trace /tmp/WORC_Example_STWStrategyHN_Regression/__sink_data__.json --sinks classification --samples all
            fastr trace /tmp/WORC_Example_STWStrategyHN_Regression/__sink_data__.json --sinks performance --samples all
            fastr trace /tmp/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000
        env:
          WORCDEBUG: true
        if: matrix.os == 'ubuntu-latest'
      - name: Run additional tests for multiclass on Linux
        run: |
            rm -r /tmp/GS/DEBUG_0
            python WORC/tests/WORCTutorialSimple_unittest_multiclass.py
            fastr trace /tmp/WORC_Example_STWStrategyHN_Multiclass/__sink_data__.json --sinks classification --samples all
            fastr trace /tmp/WORC_Example_STWStrategyHN_Multiclass/__sink_data__.json --sinks performance --samples all
            fastr trace /tmp/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000
        env:
          WORCDEBUG: true
        if: matrix.os == 'ubuntu-latest'