diff --git a/.gitignore b/helpers/.gitignore
similarity index 100%
rename from .gitignore
rename to helpers/.gitignore
diff --git a/DESCRIPTION b/helpers/DESCRIPTION
similarity index 100%
rename from DESCRIPTION
rename to helpers/DESCRIPTION
diff --git a/LICENSE b/helpers/LICENSE
similarity index 100%
rename from LICENSE
rename to helpers/LICENSE
diff --git a/NAMESPACE b/helpers/NAMESPACE
similarity index 100%
rename from NAMESPACE
rename to helpers/NAMESPACE
diff --git a/R/chdir.R b/helpers/R/chdir.R
similarity index 100%
rename from R/chdir.R
rename to helpers/R/chdir.R
diff --git a/R/datain.R b/helpers/R/datain.R
similarity index 100%
rename from R/datain.R
rename to helpers/R/datain.R
diff --git a/R/geode_utils.R b/helpers/R/geode_utils.R
similarity index 100%
rename from R/geode_utils.R
rename to helpers/R/geode_utils.R
diff --git a/R/misc.R b/helpers/R/misc.R
similarity index 100%
rename from R/misc.R
rename to helpers/R/misc.R
diff --git a/R/paea.R b/helpers/R/paea.R
similarity index 100%
rename from R/paea.R
rename to helpers/R/paea.R
diff --git a/R/preprocess.R b/helpers/R/preprocess.R
similarity index 100%
rename from R/preprocess.R
rename to helpers/R/preprocess.R
diff --git a/R/shiny_utils.R b/helpers/R/shiny_utils.R
similarity index 100%
rename from R/shiny_utils.R
rename to helpers/R/shiny_utils.R
diff --git a/R/stats.R b/helpers/R/stats.R
similarity index 100%
rename from R/stats.R
rename to helpers/R/stats.R
diff --git a/R/sysdata.rda b/helpers/R/sysdata.rda
similarity index 100%
rename from R/sysdata.rda
rename to helpers/R/sysdata.rda
diff --git a/README.md b/helpers/README.md
similarity index 100%
rename from README.md
rename to helpers/README.md
diff --git a/man/chdir_analysis_wrapper.Rd b/helpers/man/chdir_analysis_wrapper.Rd
similarity index 100%
rename from man/chdir_analysis_wrapper.Rd
rename to helpers/man/chdir_analysis_wrapper.Rd
diff --git a/man/chdir_props.Rd b/helpers/man/chdir_props.Rd
similarity index 100%
rename from man/chdir_props.Rd
rename to helpers/man/chdir_props.Rd
diff --git a/man/chdir_results.Rd b/helpers/man/chdir_results.Rd
similarity index 100%
rename from man/chdir_results.Rd
rename to helpers/man/chdir_results.Rd
diff --git a/man/choose_unique_submissions.Rd b/helpers/man/choose_unique_submissions.Rd
similarity index 100%
rename from man/choose_unique_submissions.Rd
rename to helpers/man/choose_unique_submissions.Rd
diff --git a/man/combine_results.Rd b/helpers/man/combine_results.Rd
similarity index 100%
rename from man/combine_results.Rd
rename to helpers/man/combine_results.Rd
diff --git a/man/datain_filter.Rd b/helpers/man/datain_filter.Rd
similarity index 100%
rename from man/datain_filter.Rd
rename to helpers/man/datain_filter.Rd
diff --git a/man/datain_is_valid.Rd b/helpers/man/datain_is_valid.Rd
similarity index 100%
rename from man/datain_is_valid.Rd
rename to helpers/man/datain_is_valid.Rd
diff --git a/man/datain_log2_transform.Rd b/helpers/man/datain_log2_transform.Rd
similarity index 100%
rename from man/datain_log2_transform.Rd
rename to helpers/man/datain_log2_transform.Rd
diff --git a/man/datain_preprocess.Rd b/helpers/man/datain_preprocess.Rd
similarity index 100%
rename from man/datain_preprocess.Rd
rename to helpers/man/datain_preprocess.Rd
diff --git a/man/datain_quantile_normalize.Rd b/helpers/man/datain_quantile_normalize.Rd
similarity index 100%
rename from man/datain_quantile_normalize.Rd
rename to helpers/man/datain_quantile_normalize.Rd
diff --git a/man/disabledActionButton.Rd b/helpers/man/disabledActionButton.Rd
similarity index 100%
rename from man/disabledActionButton.Rd
rename to helpers/man/disabledActionButton.Rd
diff --git a/man/disabledNumericInput.Rd b/helpers/man/disabledNumericInput.Rd
similarity index 100%
rename from man/disabledNumericInput.Rd
rename to helpers/man/disabledNumericInput.Rd
diff --git a/man/download_data.Rd b/helpers/man/download_data.Rd
similarity index 100%
rename from man/download_data.Rd
rename to helpers/man/download_data.Rd
diff --git a/man/extract_description.Rd b/helpers/man/extract_description.Rd
similarity index 100%
rename from man/extract_description.Rd
rename to helpers/man/extract_description.Rd
diff --git a/man/extract_genes.Rd b/helpers/man/extract_genes.Rd
similarity index 100%
rename from man/extract_genes.Rd
rename to helpers/man/extract_genes.Rd
diff --git a/man/extract_samples.Rd b/helpers/man/extract_samples.Rd
similarity index 100%
rename from man/extract_samples.Rd
rename to helpers/man/extract_samples.Rd
diff --git a/man/genes_coverage.Rd b/helpers/man/genes_coverage.Rd
similarity index 100%
rename from man/genes_coverage.Rd
rename to helpers/man/genes_coverage.Rd
diff --git a/man/get_path.Rd b/helpers/man/get_path.Rd
similarity index 100%
rename from man/get_path.Rd
rename to helpers/man/get_path.Rd
diff --git a/man/list_to_defs.Rd b/helpers/man/list_to_defs.Rd
similarity index 100%
rename from man/list_to_defs.Rd
rename to helpers/man/list_to_defs.Rd
diff --git a/man/paea_analysis_dispatch.Rd b/helpers/man/paea_analysis_dispatch.Rd
similarity index 100%
rename from man/paea_analysis_dispatch.Rd
rename to helpers/man/paea_analysis_dispatch.Rd
diff --git a/man/paea_analysis_wrapper.Rd b/helpers/man/paea_analysis_wrapper.Rd
similarity index 100%
rename from man/paea_analysis_wrapper.Rd
rename to helpers/man/paea_analysis_wrapper.Rd
diff --git a/man/paea_to_df.Rd b/helpers/man/paea_to_df.Rd
similarity index 100%
rename from man/paea_to_df.Rd
rename to helpers/man/paea_to_df.Rd
diff --git a/man/plot_density.Rd b/helpers/man/plot_density.Rd
similarity index 100%
rename from man/plot_density.Rd
rename to helpers/man/plot_density.Rd
diff --git a/man/plot_top_genes.Rd b/helpers/man/plot_top_genes.Rd
similarity index 100%
rename from man/plot_top_genes.Rd
rename to helpers/man/plot_top_genes.Rd
diff --git a/man/prepare_density_plot_input.Rd b/helpers/man/prepare_density_plot_input.Rd
similarity index 100%
rename from man/prepare_density_plot_input.Rd
rename to helpers/man/prepare_density_plot_input.Rd
diff --git a/man/prepare_down_genes.Rd b/helpers/man/prepare_down_genes.Rd
similarity index 100%
rename from man/prepare_down_genes.Rd
rename to helpers/man/prepare_down_genes.Rd
diff --git a/man/prepare_enrichr_input.Rd b/helpers/man/prepare_enrichr_input.Rd
similarity index 100%
rename from man/prepare_enrichr_input.Rd
rename to helpers/man/prepare_enrichr_input.Rd
diff --git a/man/prepare_gene_sets.Rd b/helpers/man/prepare_gene_sets.Rd
similarity index 100%
rename from man/prepare_gene_sets.Rd
rename to helpers/man/prepare_gene_sets.Rd
diff --git a/man/prepare_paea_results.Rd b/helpers/man/prepare_paea_results.Rd
similarity index 100%
rename from man/prepare_paea_results.Rd
rename to helpers/man/prepare_paea_results.Rd
diff --git a/man/prepare_results.Rd b/helpers/man/prepare_results.Rd
similarity index 100%
rename from man/prepare_results.Rd
rename to helpers/man/prepare_results.Rd
diff --git a/man/prepare_up_genes.Rd b/helpers/man/prepare_up_genes.Rd
similarity index 100%
rename from man/prepare_up_genes.Rd
rename to helpers/man/prepare_up_genes.Rd
diff --git a/man/preprocess.Rd b/helpers/man/preprocess.Rd
similarity index 100%
rename from man/preprocess.Rd
rename to helpers/man/preprocess.Rd
diff --git a/man/preprocess_chdir_input.Rd b/helpers/man/preprocess_chdir_input.Rd
similarity index 100%
rename from man/preprocess_chdir_input.Rd
rename to helpers/man/preprocess_chdir_input.Rd
diff --git a/man/preprocess_data.Rd b/helpers/man/preprocess_data.Rd
similarity index 100%
rename from man/preprocess_data.Rd
rename to helpers/man/preprocess_data.Rd
diff --git a/man/shiny_error_handler.Rd b/helpers/man/shiny_error_handler.Rd
similarity index 100%
rename from man/shiny_error_handler.Rd
rename to helpers/man/shiny_error_handler.Rd
diff --git a/man/shiny_list_to_li.Rd b/helpers/man/shiny_list_to_li.Rd
similarity index 100%
rename from man/shiny_list_to_li.Rd
rename to helpers/man/shiny_list_to_li.Rd
diff --git a/man/shiny_static_navbar.Rd b/helpers/man/shiny_static_navbar.Rd
similarity index 100%
rename from man/shiny_static_navbar.Rd
rename to helpers/man/shiny_static_navbar.Rd
diff --git a/man/split_chdirresults.Rd b/helpers/man/split_chdirresults.Rd
similarity index 100%
rename from man/split_chdirresults.Rd
rename to helpers/man/split_chdirresults.Rd
diff --git a/man/split_gmtfile.Rd b/helpers/man/split_gmtfile.Rd
similarity index 100%
rename from man/split_gmtfile.Rd
rename to helpers/man/split_gmtfile.Rd
diff --git a/man/submissions_per_cell_type.Rd b/helpers/man/submissions_per_cell_type.Rd
similarity index 100%
rename from man/submissions_per_cell_type.Rd
rename to helpers/man/submissions_per_cell_type.Rd
diff --git a/man/submissions_per_organism.Rd b/helpers/man/submissions_per_organism.Rd
similarity index 100%
rename from man/submissions_per_organism.Rd
rename to helpers/man/submissions_per_organism.Rd
diff --git a/man/submissions_per_user.Rd b/helpers/man/submissions_per_user.Rd
similarity index 100%
rename from man/submissions_per_user.Rd
rename to helpers/man/submissions_per_user.Rd
diff --git a/tests/testthat.R b/helpers/tests/testthat.R
similarity index 100%
rename from tests/testthat.R
rename to helpers/tests/testthat.R
diff --git a/tests/testthat/.gitignore b/helpers/tests/testthat/.gitignore
similarity index 100%
rename from tests/testthat/.gitignore
rename to helpers/tests/testthat/.gitignore
diff --git a/tests/testthat/test_chdir.R b/helpers/tests/testthat/test_chdir.R
similarity index 100%
rename from tests/testthat/test_chdir.R
rename to helpers/tests/testthat/test_chdir.R
diff --git a/tests/testthat/test_datain.R b/helpers/tests/testthat/test_datain.R
similarity index 100%
rename from tests/testthat/test_datain.R
rename to helpers/tests/testthat/test_datain.R
diff --git a/tests/testthat/test_geode_utils.R b/helpers/tests/testthat/test_geode_utils.R
similarity index 100%
rename from tests/testthat/test_geode_utils.R
rename to helpers/tests/testthat/test_geode_utils.R
diff --git a/tests/testthat/test_misc.R b/helpers/tests/testthat/test_misc.R
similarity index 100%
rename from tests/testthat/test_misc.R
rename to helpers/tests/testthat/test_misc.R
diff --git a/tests/testthat/test_paea.R b/helpers/tests/testthat/test_paea.R
similarity index 100%
rename from tests/testthat/test_paea.R
rename to helpers/tests/testthat/test_paea.R
diff --git a/tests/testthat/test_preprocess.R b/helpers/tests/testthat/test_preprocess.R
similarity index 100%
rename from tests/testthat/test_preprocess.R
rename to helpers/tests/testthat/test_preprocess.R
diff --git a/tests/testthat/test_stats.R b/helpers/tests/testthat/test_stats.R
similarity index 100%
rename from tests/testthat/test_stats.R
rename to helpers/tests/testthat/test_stats.R