diff --git a/Project.toml b/Project.toml index 6d1c0a9..bc5749f 100644 --- a/Project.toml +++ b/Project.toml @@ -4,21 +4,21 @@ authors = ["Jakob Asslaender "] version = "0.3.8" [deps] -Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" -RegularizedLeastSquares = "1e9c538a-f78c-5de5-8ffb-0b6dbe892d23" +FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -NFFT = "efe261a4-0d2b-5849-be55-fc731d526b0d" LinearOperators = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" +MRICoilSensitivities = "c57eb701-aafc-44a2-a53c-128049758959" +NFFT = "efe261a4-0d2b-5849-be55-fc731d526b0d" NFFTTools = "7424e34d-94f7-41d6-98a0-85abaf1b6c91" -MRIReco = "bdf86e05-2d2b-5731-a332-f3fe1f9e047f" -FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" +RegularizedLeastSquares = "1e9c538a-f78c-5de5-8ffb-0b6dbe892d23" [compat] -julia = "1.6" -Polyester = "0.6" -RegularizedLeastSquares = "0.8, 0.9" -NFFT = "0.12.1, 0.13" +FFTW = "1" LinearOperators = "2" +MRICoilSensitivities = "0.1.1" +NFFT = "0.12.1, 0.13" NFFTTools = "0.2" -MRIReco = "0.4,0.5, 0.6, 0.7" -FFTW = "1" +Polyester = "0.6" +RegularizedLeastSquares = "0.8, 0.9" +julia = "1.6" diff --git a/src/CoilMaps.jl b/src/CoilMaps.jl index 37ad88c..5d9018e 100644 --- a/src/CoilMaps.jl +++ b/src/CoilMaps.jl @@ -32,7 +32,7 @@ function calcCoilMaps(data::AbstractArray{Complex{T},3}, trj::AbstractVector{<:A kbp = kbp[m,:] @info "espirit: " - cmaps = @time MRIReco.espirit(kbp, img_shape, kernel_size, eigThresh_1=eigThresh_1, eigThresh_2=eigThresh_2, nmaps=nmaps) + cmaps = @time espirit(kbp, img_shape, kernel_size, eigThresh_1=eigThresh_1, eigThresh_2=eigThresh_2, nmaps=nmaps) cmaps = [cmaps[img_idx,ic,1] for ic=1:Ncoils] xbp = [ xbp[img_idx,ic ] for ic=1:Ncoils] diff --git a/src/MRFingerprintingRecon.jl b/src/MRFingerprintingRecon.jl index cf8f970..9ac4a75 100644 --- a/src/MRFingerprintingRecon.jl +++ b/src/MRFingerprintingRecon.jl @@ -5,7 +5,7 @@ using LinearAlgebra using FFTW using NFFT using NFFTTools -import MRIReco +using MRICoilSensitivities using LinearOperators export NFFTNormalOpBasisFunc, NFFTNormalOpBasisFuncLO, calcCoilMaps, calculateBackProjection, kooshball, kooshballGA