From c3b06674e76d1dc2f6d88940f9c75cb2c31a9f59 Mon Sep 17 00:00:00 2001
From: Jeff Fessler <JeffFessler@users.noreply.github.com>
Date: Fri, 17 May 2024 17:37:18 -0400
Subject: [PATCH] Standardize yml; compat ImageGeoms v0.11; to v0.0.4 (#31)

* Standardize yml

* Add _typos
---
 .github/workflows/SpellCheck.yml | 13 +++++++++++++
 Project.toml                     |  6 +++---
 _typos.toml                      |  5 +++++
 docs/make.jl                     | 10 +++++-----
 4 files changed, 26 insertions(+), 8 deletions(-)
 create mode 100644 .github/workflows/SpellCheck.yml
 create mode 100644 _typos.toml

diff --git a/.github/workflows/SpellCheck.yml b/.github/workflows/SpellCheck.yml
new file mode 100644
index 0000000..c344f6d
--- /dev/null
+++ b/.github/workflows/SpellCheck.yml
@@ -0,0 +1,13 @@
+name: Spell Check
+
+on: [pull_request]
+
+jobs:
+  typos-check:
+    name: Spell Check with Typos
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout Actions Repository
+        uses: actions/checkout@v4
+      - name: Check spelling
+        uses: crate-ci/typos@master
diff --git a/Project.toml b/Project.toml
index 801f758..a9631ef 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,7 +1,7 @@
 name = "MRIFieldmaps"
 uuid = "5af58b90-8a55-4daf-adb4-2008a66a38cf"
 authors = ["Jeff Fessler <fessler@umich.edu> and others"]
-version = "0.0.3"
+version = "0.0.4"
 
 [deps]
 ImageGeoms = "9ee76f2b-840d-4475-b6d6-e485c9297852"
@@ -11,7 +11,7 @@ SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [compat]
-ImageGeoms = "0.10"
+ImageGeoms = "0.10, 0.11"
 LimitedLDLFactorizations = "0.5"
 StatsBase = "0.33, 0.34"
-julia = "v1.9"
+julia = "v1.10"
diff --git a/_typos.toml b/_typos.toml
new file mode 100644
index 0000000..e8c5292
--- /dev/null
+++ b/_typos.toml
@@ -0,0 +1,5 @@
+[default]
+extend-ignore-identifiers-re = [
+    "nd",
+    "numer",
+]
diff --git a/docs/make.jl b/docs/make.jl
index d00b5f0..93f9213 100644
--- a/docs/make.jl
+++ b/docs/make.jl
@@ -2,8 +2,8 @@ execute = isempty(ARGS) || ARGS[1] == "run"
 
 org, reps = :MagneticResonanceImaging, :MRIFieldmaps
 eval(:(using $reps))
-using Documenter
-using Literate
+import Documenter
+import Literate
 
 # https://juliadocs.github.io/Documenter.jl/stable/man/syntax/#@example-block
 ENV["GKSwstype"] = "100"
@@ -23,7 +23,7 @@ binder_root_url =
 
 
 repo = eval(:($reps))
-DocMeta.setdocmeta!(repo, :DocTestSetup, :(using $reps); recursive=true)
+Documenter.DocMeta.setdocmeta!(repo, :DocTestSetup, :(using $reps); recursive=true)
 
 # preprocessing
 inc1 = "include(\"../../../inc/reproduce.jl\")"
@@ -77,7 +77,7 @@ format = Documenter.HTML(;
     assets = ["assets/custom.css"],
 )
 
-makedocs(;
+Documenter.makedocs(;
     modules = [repo],
     authors = "Jeff Fessler and contributors",
     sitename = "$repo.jl",
@@ -90,7 +90,7 @@ makedocs(;
 )
 
 if isci
-    deploydocs(;
+    Documenter.deploydocs(;
         repo = "github.com/$base",
         devbranch = "main",
         devurl = "dev",