DESCRIPTION

Package: DropletUtils
Version: 1.25.2
Date: 2024-07-23
Title: Utilities for Handling Single-Cell Droplet Data
Authors@R: c(
    person("Aaron", "Lun", role = "aut"),
    person("Jonathan", "Griffiths", role=c("ctb", "cre"), email = "jonathan.griffiths.94@gmail.com"),
    person("Davis", "McCarthy", role="ctb"),
    person("Dongze", "He", role="ctb"),
    person("Rob", "Patro", role="ctb"))
Depends: SingleCellExperiment
Imports: 
    utils,
    stats,
    methods,
    Matrix,
    Rcpp,
    BiocGenerics,
    S4Vectors,
    IRanges,
    GenomicRanges,
    SummarizedExperiment,
    BiocParallel,
    SparseArray (>= 1.5.18),
    DelayedArray (>= 0.31.9),
    DelayedMatrixStats,
    HDF5Array,
    rhdf5,
    edgeR,
    R.utils,
    dqrng,
    beachmat,
    scuttle
Suggests: 
    testthat,
    knitr,
    BiocStyle,
    rmarkdown,
    jsonlite,
    DropletTestFiles
biocViews: 
    ImmunoOncology,
    SingleCell,
    Sequencing,
    RNASeq,
    GeneExpression,
    Transcriptomics,
    DataImport,
    Coverage
Description: 
    Provides a number of utility functions for handling single-cell 
    (RNA-seq) data from droplet technologies such as 10X Genomics. This 
    includes data loading from count matrices or molecule information files, 
    identification of cells from empty droplets, removal of barcode-swapped 
    pseudo-cells, and downsampling of the count matrix.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
LinkingTo: 
    Rcpp, 
    beachmat, 
    Rhdf5lib, 
    BH, 
    dqrng,
    scuttle
SystemRequirements: C++11, GNU make
RoxygenNote: 7.3.2