ome.ttl

@prefix : <https://github.com/Mat-O-Lab/OmeroExtractor/raw/main/ome.ttl#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/>.
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix qudt: <http://qudt.org/schema/qudt/> .



<https://github.com/Mat-O-Lab/OmeroExtractor/raw/main/ome.xml> rdf:type owl:Ontology ;
                                                                owl:imports xml: .


#################################################################
#    Classes
#################################################################

:Image a owl:Class ;
    rdfs:label "Image" ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Image";
    skos:definition "An Omero Image.".

:Channel a owl:Class ;
    rdfs:label "Channel" ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Channel";
    skos:definition "An Omero Image Channel.".

:Pixels a owl:Class ;
    rdfs:label "Pixels" ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Pixels";
    skos:definition "An Omero Pixels Object.".

:PixelsType a owl:Class ;
    rdfs:label "Pixels Type" ;
    :ome_type "TBD#PixelsType";
    skos:definition "An Omero Pixels Type Object.".

:PhotometricInterpretation a owl:Class ;
    rdfs:label "Pixels Type" ;
    :ome_type "TBD#PhotometricInterpretation";
    skos:definition "An Omero Photometric Interpretation Object.".

:OriginalMeta a owl:Class ;
    rdfs:label "Original Meta Data" ;
    :ome_type "OriginalMeta";
    skos:definition "The original meta data, as passed by the bio formats libary".

:User a owl:Class ;
    owl:equivalentClass foaf:Person, prov:Agent;
    rdfs:label "User" ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter";
    skos:definition "An named Omero user.".

:Permissions a owl:Class ;
    rdfs:label "Permissions" ;
    :ome_type "TBD#Permissions";
    skos:definition "An Omero Permissions Object.".

:Detail a owl:Class ;
    rdfs:label "Detail" ;
    :ome_type "TBD#Details";
    skos:definition "An Omero Detail Object.".


:Dataset rdf:type owl:Class ;
    rdfs:label "Dataset" ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Dataset";
    skos:definition "An Omero Dataset.".

:Roi rdf:type owl:Class ;
    rdfs:label "Roi" ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#ROI";
    skos:definition "An Omero Roi.".

:Shape rdf:type owl:Class ;
    rdfs:label "Shape" ;
    rdfs:subClassOf :Roi ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Shape";
    skos:definition "An Omero Shape.".

:Polygon rdf:type owl:Class ;
    rdfs:label "Polygon" ;
    rdfs:subClassOf :Shape ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Polygon";
    skos:definition "An Omero Polygon Shape.".

:Rectangle rdf:type owl:Class ;
    rdfs:label "Rectangle" ;
    rdfs:subClassOf :Shape ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Rectangle";
    skos:definition "An Omero Rectangle Shape.".

:Line rdf:type owl:Class ;
    rdfs:label "Line" ;
    rdfs:subClassOf :Shape ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Line";
    skos:definition "An Omero Line Shape.".

:Polyline rdf:type owl:Class ;
    rdfs:label "Polyline" ;
    rdfs:subClassOf :Shape ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Polyline";
    skos:definition "An Omero Polyline Shape.".

:Ellipse rdf:type owl:Class ;
    rdfs:label "Ellipse" ;
    rdfs:subClassOf :Shape ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Ellipse";
    skos:definition "An Omero Ellipse Shape.".

:Label rdf:type owl:Class ;
    rdfs:label "Label Shape" ;
    rdfs:subClassOf :Shape ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Label";
    skos:definition "An Omero Label Shape.".


:Point rdf:type owl:Class ;
    rdfs:label "Point" ;
    qudt:subClassOf :Shape ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#Point";
    skos:definition "An Omero Point Shape.".

:Width rdf:type qudt:Quantity ;
    qudt:quantityKind qudt:Width ;
    rdfs:label "Width" ;
    :ome_type "TBD#LengthI";
    skos:definition "A With of a as one dimentional extend.".


:Group a owl:Class ;
    owl:equivalentClass foaf:Group;
    rdfs:label "Group" ;
    :ome_type "http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup";
    skos:definition "An named Omero Group of Users.".


      

#################################################################
#    Object Properties
#################################################################

:relates_to rdf:type owl:ObjectProperty ;
                    :ome_type "omero:details";
                    :ome_type "Channels";
                    :ome_type "permissions";
                    :ome_type "group";
                    :ome_type "Pixels";
                    :ome_type "omero:photometricInterpretation";
                    :ome_type "original_meta";
                    :ome_type "shapes";
                    rdfs:label "relates to"@en .

:notes rdf:type owl:ObjectProperty ;
                    rdfs:label "notes"@en .

:physicalSizeX rdf:type owl:ObjectProperty ;
                    :ome_type "PhysicalSizeX";
                    rdfs:label "Physical Size X"@en .

:physicalSizeY rdf:type owl:ObjectProperty ;
                    :ome_type "PhysicalSizeY";
                    rdfs:label "Physical Size Y"@en .

:significantBits rdf:type owl:ObjectProperty ;
                    :ome_type "SignificantBits";
                    rdfs:label "Significant Bits"@en .

:sizeX rdf:type owl:ObjectProperty ;
                    :ome_type "SizeX";
                    rdfs:label "Size X"@en .

:sizeY rdf:type owl:ObjectProperty ;
                    :ome_type "SizeY";
                    rdfs:label "Size Y"@en .

:sizeZ rdf:type owl:ObjectProperty ;
                    :ome_type "SizeZ";
                    rdfs:label "Size Z"@en .

:sizeC rdf:type owl:ObjectProperty ;
                    :ome_type "SizeC";
                    rdfs:label "Size C"@en .

:sizeT rdf:type owl:ObjectProperty ;
                    :ome_type "SizeT";
                    rdfs:label "Size T"@en .

:sizeT rdf:type owl:ObjectProperty ;
                    :ome_type "SizeT";
                    rdfs:label "Size T"@en .

:samplesPerPixel rdf:type owl:ObjectProperty ;
                    :ome_type "SamplesPerPixel";
                    rdfs:label "Samples per Pixel"@en .




#################################################################
#    Annotation Properties
#################################################################

:ome_type a owl:AnnotationProperty ;
  rdfs:range xsd:string .

dc:creator :ome_type "owner" .

rdfs:label :ome_type "Name" ;
    :ome_type "Text" .
rdf:type :ome_type "Type".
rdf:value  :ome_type "value".

qudt:value  :ome_type "Value".
qudt:unit  :ome_type "Unit".


foaf:givenname :ome_type "FirstName".
foaf:family_name :ome_type "LastName".
foaf:mbox :ome_type "Email".
foaf:accountName :ome_type "UserName".

:datasets a owl:AnnotationProperty ;
  :ome_type "url:datasets".

:rois a owl:AnnotationProperty ;
  :ome_type "url:rois".

:rawMeta a owl:AnnotationProperty ;
  rdfs:label "url"@en ;
  skos:definition "Link to the original metadata api endpoint.".

:url a owl:AnnotationProperty ;
  rdfs:label "url"@en ;
  skos:definition "Link to the to image render api endpoint.".

:download a owl:AnnotationProperty ;
  rdfs:label "download"@en ;
  skos:definition "Link to download the original image.".

:permissions_str a owl:AnnotationProperty ;
  :ome_type "perm" ;
  rdfs:range xsd:string .

:canAnnotate a owl:AnnotationProperty ;
  :ome_type "canAnnotate" ;
  rdfs:range xsd:boolean .

:canDelete a owl:AnnotationProperty ;
  :ome_type "canDelete" ;
  rdfs:range xsd:boolean .

:canEdit a owl:AnnotationProperty ;
  :ome_type "canEdit" ;
  rdfs:range xsd:boolean .

:canLink a owl:AnnotationProperty ;
  :ome_type "canLink" ;
  rdfs:range xsd:boolean .

:isWorldWrite a owl:AnnotationProperty ;
  :ome_type "isWorldWrite" ;
  rdfs:range xsd:boolean .

:isWorldRead a owl:AnnotationProperty ;
  :ome_type "isWorldRead" ;
  rdfs:range xsd:boolean .

:isGroupWrite a owl:AnnotationProperty ;
  :ome_type "isGroupWrite" ;
  rdfs:range xsd:boolean .

:isGroupRead a owl:AnnotationProperty ;
  :ome_type "isGroupRead" ;
  rdfs:range xsd:boolean .

:isGroupAnnotate a owl:AnnotationProperty ;
  :ome_type "isGroupAnnotate" ;
  rdfs:range xsd:boolean .

:isUserWrite a owl:AnnotationProperty ;
  :ome_type "isUserWrite" ;
  rdfs:range xsd:boolean .

:isUserRead a owl:AnnotationProperty ;
  :ome_type "isUserRead" ;
  rdfs:range xsd:boolean .

:x a owl:AnnotationProperty ;
  rdfs:label "x Coordinate"@en ;
  :ome_type "X" ;
  skos:definition "X Coordinate in an Omero Image.".

:y a owl:AnnotationProperty ;
  rdfs:label "y Coordinate"@en ;
  :ome_type "Y" ;
  skos:definition "Y Coordinate in an Omero Image.".

:width a owl:AnnotationProperty ;
  rdfs:label "Width"@en ;
  :ome_type "Width" ;
  :ome_type "RadiusX";
  skos:definition "Width as Lenght an x axis of the bounding box of a Shape".

:strokeWidth a owl:AnnotationProperty ;
  rdfs:label "Stroke Width"@en ;
  :ome_type "StrokeWidth" ;
  skos:definition "Width as Thickness of a Line bounding a Shape".


:height a owl:AnnotationProperty ;
  rdfs:label "Height"@en ;
  :ome_type "Height" ;
  :ome_type "RadiusY";
  skos:definition "Height as Lenght an x axis of the bounding box of a Shape".

:points a owl:AnnotationProperty ;
  rdfs:label "List of points as string"@en ;
  :ome_type "Points" ;
  skos:definition "List of points as string, in the format x,y separarated by spaces".

:x1 a owl:AnnotationProperty ;
  rdfs:label "x Coordinate of first Point"@en ;
  :ome_type "X1" ;
  skos:definition "X Coordinate of first Point of a Connection.".

:y1 a owl:AnnotationProperty ;
  rdfs:label "y Coordinate of first Point"@en ;
  :ome_type "Y1" ;
  skos:definition "Y Coordinate of first Point of a Connection.".

:x2 a owl:AnnotationProperty ;
  rdfs:label "x Coordinate of second Point"@en ;
  :ome_type "X2" ;
  skos:definition "X Coordinate of second Point of a Connection.".

:y2 a owl:AnnotationProperty ;
  rdfs:label "y Coordinate of second Point"@en ;
  :ome_type "Y2" ;
  skos:definition "Y Coordinate of second Point of a Connection.".

:markerEnd a owl:AnnotationProperty ;
  rdfs:label "Style of Marker at End"@en ;
  :ome_type "MarkerEnd" ;
  skos:definition "Style of Marker at End of a Connection.".

:markerStart a owl:AnnotationProperty ;
  rdfs:label "Style of Marker at Start"@en ;
  :ome_type "MarkerStart" ;
  skos:definition "Style of Marker at Start of a Connection.".

:fillColor a owl:AnnotationProperty ;
  rdfs:label "Fill Color"@en ;
  :ome_type "FillColor" ;
  skos:definition "Fill Color of a Shape in RGB Hex.".

:strokeColor a owl:AnnotationProperty ;
  rdfs:label "Stroke Color"@en ;
  :ome_type "StrokeColor" ;
  skos:definition "Stroke Color of a Shape in RGB Hex.".