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Schwich et al. 2020

create_RNAmaps_for_all_PASs.R

This function was used to generate RNAmaps showing binding signal at all detected sPASs, pPASs and dPASs for two iCLIP libraries.

create_RNAmaps_for_regulated_PASs.R

This function was used to generate RNAmaps showing binding signal at regulated pPASs and dPASs (e.g. from transcripts with shorter 3'UTRs in the Srsf3 KD) in comparison to pPASs and dPASs of transcripts not affected for two iCLIP libraries.

motif_search.R

This function was used to search for an enrichment of SRSF3 and SRSF7 consensus binding motifs (e.g. GAY) around sPASs, pPASs and dPASs.