tests.yml

name: tests
on:
  # Run tests on every push to the main branch,
  # on every pull request, and once a week (every monday at 05:00)
  push:
  pull_request:
  schedule:
    - cron: '0 5 * * 1'
jobs:
  canceller:
    runs-on: ubuntu-20.04
    steps:
      - name: Cancel previous runs
        uses: styfle/cancel-workflow-action@0.12.1
  tests-Unix-CLI:
    strategy:
      fail-fast: false
      matrix:
        include:
          # Ubuntu with the oldest supported GCC
          # (used to be 4.8, but with 20.04 it is 7, sadly).
          - {os: ubuntu-20.04, gcc: 7, python: 3.8}
          - {os: ubuntu-20.04, gcc: 11, python: 3.9}
          # macOS, oldest supported version
          # (macos-10.15 and macos-11 were removed by GitHub)
          - {os: macos-12, python: 3.8}
          # macOS, newest supported version (haven't tried macos-14 yet)
          - {os: macos-13, python: 3.9}
      
    runs-on: ${{ matrix.os }}
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Setup Mambaforge
        uses: conda-incubator/setup-miniconda@v3
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          activate-environment: anaconda-client-env
          use-mamba: true
          python-version: ${{ matrix.python }}
      - name: Get Date
        id: get-date
        run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT
        shell: bash
      - name: Cache Conda env
        uses: actions/cache@v3
        with:
          path: ${{ env.CONDA }}/envs
          key:
            conda-${{ runner.os }}--python-${{ matrix.python }}--${{ runner.arch }}--${{
            steps.get-date.outputs.today }}-${{
            hashFiles('treerec/tests/environment.yml') }}-${{ env.CACHE_NUMBER}}
        env:
          # Increase this value to reset cache if
          # treerec/tests/environment.yml has not changed
          CACHE_NUMBER: 0
        id: cache
      - name: Update environment
        run:
          mamba env update -n anaconda-client-env -f treerec/tests/environment.yml
        if: steps.cache.outputs.cache-hit != 'true'
      - name: Workaround for gcc-11
        if: startsWith(matrix.os, 'ubuntu') && matrix.gcc == 11
        run: |
          sudo add-apt-repository ppa:ubuntu-toolchain-r/test -y && \
          sudo apt-get update -y
      - name: Set up default GCC (in Ubuntu)
        if: startsWith(matrix.os, 'ubuntu')
        run: |
          sudo apt-get install gcc-${{ matrix.gcc }} g++-${{ matrix.gcc }} && \
          sudo update-alternatives \
            --install /usr/bin/gcc gcc /usr/bin/gcc-${{ matrix.gcc }} 100 \
            --slave /usr/bin/g++ g++ /usr/bin/g++-${{ matrix.gcc }}
      - name: Build and test (Debug)
        run: |
          mkdir Debug && \
          cd Debug && \
          cmake -D CMAKE_BUILD_TYPE=Debug .. && \
          make -j 2 && make test
      - name: Build and test (Release)
        run: |
          mkdir Release && \
          cd Release && \
          cmake -D CMAKE_BUILD_TYPE=Release .. && \
          make -j 2 && make test
      - name: Treesequence tests
        shell: bash -el {0}
        run: |
            conda activate anaconda-client-env && \
            export PATH=$PATH:$PWD/Release && \
            echo $PATH && \
            cd treerec/tests && python -m pytest -xv
  
  tests-Windows-CLI:
    runs-on: windows-latest
    strategy:
      fail-fast: false
      matrix:
        include:
          - {sys: mingw64, env: x86_64, python: 3.8}
          - {sys: ucrt64, env: ucrt-x86_64, python: 3.8}
    defaults:
      run:
        shell: msys2 {0}
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Setup MSYS2 ${{matrix.sys}}
        uses: msys2/setup-msys2@v2
        with:
          msystem: ${{matrix.sys}}
          update: true
          install: >-
            git
            base-devel
            msys2-devel
            mingw-w64-${{matrix.env}}-toolchain
            mingw-w64-${{matrix.env}}-cmake
      - name: Setup Mambaforge
        uses: conda-incubator/setup-miniconda@v3
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          activate-environment: anaconda-client-env
          use-mamba: true
          auto-update-conda: true
          python-version: ${{ matrix.python }}
      - name: Get Date
        id: get-date
        run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT
        shell: bash
      - name: Cache Conda env
        uses: actions/cache@v3
        with:
          path: ${{ env.CONDA }}/envs
          key:
            conda-${{ runner.os }}--python-${{ matrix.python }}--${{ runner.arch }}--${{
            steps.get-date.outputs.today }}-${{
            hashFiles('treerec/tests/environment.yml') }}-${{ env.CACHE_NUMBER}}
        env:
          # Increase this value to reset cache if
          # treerec/tests/environment.yml has not changed
          CACHE_NUMBER: 0
        id: cache
      - name: Update environment
        shell: bash -el {0}
        run:
          mamba env update -n anaconda-client-env -f treerec/tests/environment.yml
        if: steps.cache.outputs.cache-hit != 'true'
      - name: Build and test (Debug)
        run: |
          cd windows_compat/gnulib && \
          touch --date="`date`" aclocal.m4 Makefile.am configure configure.ac config.h.in Makefile.in && \
          cd ../.. && \
          mkdir Debug && \
          cd Debug && \
          cmake -G"MSYS Makefiles" -DCMAKE_BUILD_TYPE=Debug .. && \
          make -j 2 && make test
      - name: Build and test (Release)
        run: |
          cd windows_compat/gnulib && \
          touch --date="`date`" aclocal.m4 Makefile.am configure configure.ac config.h.in Makefile.in && \
          cd ../.. && \
          mkdir Release && \
          cd Release && \
          cmake -G"MSYS Makefiles" -DCMAKE_BUILD_TYPE=Release .. && \
          make -j 2 && make test
      - name: Treesequence tests
        shell: bash -el {0}
        run: |
            conda activate anaconda-client-env && \
            export PATH=$PATH:$PWD/Release && \
            echo $PATH && \
            cd treerec/tests && python -m pytest -xv
  
  tests-Unix-GUI:
    strategy:
      fail-fast: false
      matrix:
        include:
          # Ubuntu 20.04 with the oldest supported Qt5 and GCC.
          - {os: ubuntu-20.04, qt: 5.9.5, gcc: 7}
          # Ubuntu 20.04 with the most recent Qt5 and GCC.
          - {os: ubuntu-20.04, qt: 5.15.2, gcc: 11}
          # Ubuntu 22.04 with the most recent Qt5 and GCC.
          - {os: ubuntu-22.04, qt: 5.15.2, gcc: 12}
          # Ubuntu 22.04 with the most recent Qt6 and GCC; this is the min for Qt6
          - {os: ubuntu-22.04, qt: 6.7.2, gcc: 12}
          # old macOS with oldest supported Qt5
          - {os: macos-12, qt: 5.9.5}
          # new macOS with most recent Qt5
          - {os: macos-13, qt: 5.15.2}
          # new macOS with most recent Qt6
          - {os: macos-13, qt: 6.7.2}
    runs-on: ${{ matrix.os }}
    env:
      CXXFLAGS: -D NO_QT_VERSION_ERROR
    defaults:
      run:
        shell: bash
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Workaround for gcc-11
        if: startsWith(matrix.os, 'ubuntu') && matrix.gcc == 11
        run: |
          sudo add-apt-repository ppa:ubuntu-toolchain-r/test -y && \
          sudo apt-get update -y
      - name: Set up default GCC (in Ubuntu)
        if: startsWith(matrix.os, 'ubuntu')
        run: |
          sudo apt-get install gcc-${{ matrix.gcc }} g++-${{ matrix.gcc }} && \
          sudo update-alternatives \
            --install /usr/bin/gcc gcc /usr/bin/gcc-${{ matrix.gcc }} 100 \
            --slave /usr/bin/g++ g++ /usr/bin/g++-${{ matrix.gcc }}

      - name: Install Qt
        uses: jurplel/install-qt-action@v4
        with:
          version: ${{ matrix.qt }}
      - name: Release build with SLiMGUI
        run: |
          mkdir Release && \
          cd Release  && \
          cmake -D BUILD_SLIMGUI=ON -D CMAKE_BUILD_TYPE=Release ..  && \
          make -j 2 && make test
  
  tests-Windows-GUI:
    strategy:
      fail-fast: false
      matrix:
        include:
          - {sys: mingw64, env: x86_64}
          - {sys: ucrt64, env: ucrt-x86_64}
    runs-on: windows-latest
    defaults:
      run:
        shell: msys2 {0}
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Setup MSYS2 ${{matrix.sys}}
        uses: msys2/setup-msys2@v2
        with:
          msystem: ${{matrix.sys}}
          update: true
          install: >-
            git
            base-devel
            msys2-devel
            mingw-w64-${{matrix.env}}-toolchain
            mingw-w64-${{matrix.env}}-cmake
            mingw-w64-${{matrix.env}}-qt5-base
      - name: Release build
        run: |
          cd . && \
          cd windows_compat/gnulib && \
          touch --date="`date`" aclocal.m4 Makefile.am configure configure.ac config.h.in Makefile.in && \
          cd ../.. && \
          mkdir Release && \
          cd Release && \
          cmake -G"MSYS Makefiles" -DBUILD_SLIMGUI=ON -DCMAKE_BUILD_TYPE=Release .. && \
          make -j 2 && make test

  tests-windows-latest-pacman:
    runs-on: windows-latest
    strategy:
      fail-fast: false
      matrix:
        include:
          - {sys: mingw64, env: x86_64}
          - {sys: ucrt64, env: ucrt-x86_64}
    defaults:
      run:
        shell: msys2 {0}
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Setup MSYS2 ${{matrix.sys}}
        uses: msys2/setup-msys2@v2
        with:
          msystem: ${{matrix.sys}}
          update: true
          install: >-
            mingw-w64-${{matrix.env}}-slim-simulator
      - name: Test
        run: |
          eidos -testEidos
          slim -testEidos
          slim -testSLiM