diff --git a/physiofit/base/io.py b/physiofit/base/io.py
index dec385c..562d6bd 100644
--- a/physiofit/base/io.py
+++ b/physiofit/base/io.py
@@ -202,6 +202,19 @@ def get_models(self, data=None):
                 else:
                     self.models.append(model_class(self.data))
 
+    def get_local_model_folder(self) -> str:
+        """
+        Return the path towards the actual environment's used models folder
+        """
+
+        model_dir = Path(__file__).parent / "models"
+        return str(model_dir)
+
+    # TODO: Implement this function to add model to model folder and add button to GUI
+    @staticmethod
+    def add_model(model_file):
+        pass
+
     @staticmethod
     def read_yaml(yaml_file: str | bytes) -> ConfigParser:
 
@@ -227,7 +240,7 @@ def read_yaml(yaml_file: str | bytes) -> ConfigParser:
                 )
         return config_parser
 
-    def initialize_fitter(self, data, **kwargs):
+    def initialize_fitter(self, data: pd.DataFrame, **kwargs) -> PhysioFitter:
         """
         Initialize a PhysioFitter object
 
@@ -266,7 +279,7 @@ def initialize_fitter(self, data, **kwargs):
         return fitter
 
 
-    def output_pdf(self, fitter, export_path: str | Path = None):
+    def output_pdf(self, fitter: PhysioFitter, export_path: str | Path = None):
         """
         Handle the creation and output of a pdf file containing fit results as
         a plot
diff --git a/physiofit/ui/cli.py b/physiofit/ui/cli.py
index 889aa86..449b51f 100644
--- a/physiofit/ui/cli.py
+++ b/physiofit/ui/cli.py
@@ -1,5 +1,14 @@
 """
 Module containing the Command-Line Interface control logic.
+
+The Command-Line Interface has two goals:
+
+    i) Have a local CLI that can be used to launch jobs in a concise and quick manner, without use of the Graphical
+    User Interface. This can help when testing many different parameter sets, and also permits easy pipelining of the
+    tool, as described below.
+    ii) Have a version compatible with an integration onto the Galaxy W4M platform to be used in automated flux
+    calculation workflows
+
 """
 import argparse
 import logging
diff --git a/physiofit/ui/gui.py b/physiofit/ui/gui.py
index 3036b94..a0c3a20 100644
--- a/physiofit/ui/gui.py
+++ b/physiofit/ui/gui.py
@@ -163,7 +163,7 @@ def _initialize_opt_menu(self):
 
                     self.io.res_path = results_path / experiment
                     if not self.io.res_path.is_dir():
-                        self.io.res_path.mkdir()
+                        self.io.res_path.mkdir(parents=True)
                     # Initialize the fitter object
                     self.io.names = self.io.data.columns[1:].to_list()
                     kwargs = self._build_fitter_kwargs()
@@ -220,17 +220,21 @@ def _initialize_opt_menu_widgets(self, file_extension):
         model_options = [
             model.model_name for model in self.io.models
         ]
-        model_options.insert(0, "--")
+        if self.config_parser.model:
+            idx = model_options.index(self.config_parser.model["model_name"])
+        else:
+            idx = None
         model_name = st.selectbox(
             label="Model",
             options=model_options,
             key="model_selector",
-            help="Select the flux calculation model"
+            help="Select the flux calculation model",
+            index=idx
         )
 
         #if model_name == "Dynamic system (only substrates)":
         #    st.error("Not yet implemented...")
-        if model_name != "--":
+        if model_name:
             # Initialize selected model
             self.model = self.io.select_model(model_name)
             try:
diff --git a/poetry.lock b/poetry.lock
index 3a00b4b..757ee73 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -157,13 +157,13 @@ lxml = ["lxml"]
 
 [[package]]
 name = "bleach"
-version = "6.0.0"
+version = "6.1.0"
 description = "An easy safelist-based HTML-sanitizing tool."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "bleach-6.0.0-py3-none-any.whl", hash = "sha256:33c16e3353dbd13028ab4799a0f89a83f113405c766e9c122df8a06f5b85b3f4"},
-    {file = "bleach-6.0.0.tar.gz", hash = "sha256:1a1a85c1595e07d8db14c5f09f09e6433502c51c595970edc090551f0db99414"},
+    {file = "bleach-6.1.0-py3-none-any.whl", hash = "sha256:3225f354cfc436b9789c66c4ee030194bee0568fbf9cbdad3bc8b5c26c5f12b6"},
+    {file = "bleach-6.1.0.tar.gz", hash = "sha256:0a31f1837963c41d46bbf1331b8778e1308ea0791db03cc4e7357b97cf42a8fe"},
 ]
 
 [package.dependencies]
@@ -171,17 +171,17 @@ six = ">=1.9.0"
 webencodings = "*"
 
 [package.extras]
-css = ["tinycss2 (>=1.1.0,<1.2)"]
+css = ["tinycss2 (>=1.1.0,<1.3)"]
 
 [[package]]
 name = "blinker"
-version = "1.6.2"
+version = "1.6.3"
 description = "Fast, simple object-to-object and broadcast signaling"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "blinker-1.6.2-py3-none-any.whl", hash = "sha256:c3d739772abb7bc2860abf5f2ec284223d9ad5c76da018234f6f50d6f31ab1f0"},
-    {file = "blinker-1.6.2.tar.gz", hash = "sha256:4afd3de66ef3a9f8067559fb7a1cbe555c17dcbe15971b05d1b625c3e7abe213"},
+    {file = "blinker-1.6.3-py3-none-any.whl", hash = "sha256:296320d6c28b006eb5e32d4712202dbcdcbf5dc482da298c2f44881c43884aaa"},
+    {file = "blinker-1.6.3.tar.gz", hash = "sha256:152090d27c1c5c722ee7e48504b02d76502811ce02e1523553b4cf8c8b3d3a8d"},
 ]
 
 [[package]]
@@ -497,13 +497,13 @@ test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
 
 [[package]]
 name = "cycler"
-version = "0.12.0"
+version = "0.12.1"
 description = "Composable style cycles"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "cycler-0.12.0-py3-none-any.whl", hash = "sha256:7896994252d006771357777d0251f3e34d266f4fa5f2c572247a80ab01440947"},
-    {file = "cycler-0.12.0.tar.gz", hash = "sha256:8cc3a7b4861f91b1095157f9916f748549a617046e67eb7619abed9b34d2c94a"},
+    {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"},
+    {file = "cycler-0.12.1.tar.gz", hash = "sha256:88bb128f02ba341da8ef447245a9e138fae777f6a23943da4540077d3601eb1c"},
 ]
 
 [package.extras]
@@ -581,17 +581,6 @@ files = [
     {file = "docutils-0.18.1.tar.gz", hash = "sha256:679987caf361a7539d76e584cbeddc311e3aee937877c87346f31debc63e9d06"},
 ]
 
-[[package]]
-name = "et-xmlfile"
-version = "1.1.0"
-description = "An implementation of lxml.xmlfile for the standard library"
-optional = false
-python-versions = ">=3.6"
-files = [
-    {file = "et_xmlfile-1.1.0-py3-none-any.whl", hash = "sha256:a2ba85d1d6a74ef63837eed693bcb89c3f752169b0e3e7ae5b16ca5e1b3deada"},
-    {file = "et_xmlfile-1.1.0.tar.gz", hash = "sha256:8eb9e2bc2f8c97e37a2dc85a09ecdcdec9d8a396530a6d5a33b30b9a92da0c5c"},
-]
-
 [[package]]
 name = "exceptiongroup"
 version = "1.1.3"
@@ -652,53 +641,53 @@ typing = ["typing-extensions (>=4.7.1)"]
 
 [[package]]
 name = "fonttools"
-version = "4.43.0"
+version = "4.43.1"
 description = "Tools to manipulate font files"
 optional = false
 python-versions = ">=3.8"
 files = [
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-    {file = "fonttools-4.43.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d08a694b280d615460563a6b4e2afb0b1b9df708c799ec212bf966652b94fc84"},
-    {file = "fonttools-4.43.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9d654d3e780e0ceabb1f4eff5a3c042c67d4428d0fe1ea3afd238a721cf171b3"},
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 ]
 
 [[package]]
@@ -3027,4 +3006,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8,<3.9.7 || >3.9.7,<3.12"
-content-hash = "e48865fa45fb9039e0c7936fa2bbfc779c11927783c339f9848da999c7db4ad5"
+content-hash = "e4c7f0f80a2c32e3437444122643bcf93feeb108f23d40ba6c57e4e34250ec06"
diff --git a/pyproject.toml b/pyproject.toml
index dc27d8c..d38e508 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "physiofit"
-version = "3.1.1"
+version = "3.2.0"
 description = "Calculate extracellular fluxes from metabolite concentrations and biomass data"
 authors = ["llegregam <legregam@insa-toulouse.fr>"]
 license = "GNU General Public License (GPL)"
@@ -16,7 +16,6 @@ numpy = "^1.24.2"
 scipy = "^1.10.1"
 streamlit = "^1.20.0"
 matplotlib = "^3.7.1"
-openpyxl = "^3.0.9"
 pyyaml = "^6.0"
 
 [tool.poetry.group.dev.dependencies]
diff --git a/validation/models/Monod_model/data.tsv b/validation/models/Monod_model/data.tsv
index 867e816..abfe37c 100644
--- a/validation/models/Monod_model/data.tsv
+++ b/validation/models/Monod_model/data.tsv
@@ -1,10 +1,10 @@
-time	X	S_GlcEq	P_ethanol
-0	1.1059872	75.04926	0
-2	1.1495275	73.038826	0.57032937
-4	1.9303926	70.92306	1.6142677
-6	2.7112577	68.06932	2.5530024
-10	5.3252807	58.518	6.1151433
-16	11.72252	33.73693	18.411366
-22	21.279594	1.3718239	31.23335
-34	21.328758	0	31.5461
-45	21.27246	0	31.384602
+experiments	time	X	S_GlcEq	P_ethanol
+A	0	1.1059872	75.04926	0
+A	2	1.1495275	73.038826	0.57032937
+A	4	1.9303926	70.92306	1.6142677
+A	6	2.7112577	68.06932	2.5530024
+A	10	5.3252807	58.518	6.1151433
+A	16	11.72252	33.73693	18.411366
+A	22	21.279594	1.3718239	31.23335
+A	34	21.328758	0	31.5461
+A	45	21.27246	0	31.384602
diff --git a/validation/models/Monod_model/physiofit_results/config_file.yml b/validation/models/Monod_model/physiofit_results/config_file.yml
index ada66fa..8769f50 100644
--- a/validation/models/Monod_model/physiofit_results/config_file.yml
+++ b/validation/models/Monod_model/physiofit_results/config_file.yml
@@ -18,7 +18,7 @@ model:
     S_GlcEq_s_0: 100
     X_0: 1
     y_BM: 1
-path_to_data: C:\Users\millard\Documents\GIT\PhysioFit\data_test\config_file.yml
+path_to_data: ..\data.tsv
 sds:
   P_ethanol: 3
   S_GlcEq: 7