From 0a02a889ca44cdda3ad890f2f559a277a5c1159e Mon Sep 17 00:00:00 2001 From: llegregam Date: Mon, 11 Mar 2024 17:56:30 +0100 Subject: [PATCH 1/2] Fixed bug in CLI mode where experiments where not being read properly --- physiofit/ui/cli.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/physiofit/ui/cli.py b/physiofit/ui/cli.py index 84204e7..723e124 100644 --- a/physiofit/ui/cli.py +++ b/physiofit/ui/cli.py @@ -267,10 +267,6 @@ def process(args): # If configuration file is present we launch the optimization experiments = list(data["experiments"].unique()) data = data.set_index("experiments") - for exp in experiments: - logger.info(f"Running optimization for {exp}") - run_data = data.loc[exp, :].sort_values("time").copy() - run(run_data, args, logger, exp) run(data, args, logger, experiments) logger.info("Done!") sys.exit() From 93cb454990c5d799b510d52740ed142c13ddaf52 Mon Sep 17 00:00:00 2001 From: llegregam Date: Mon, 11 Mar 2024 17:56:55 +0100 Subject: [PATCH 2/2] bump to 3.3.4 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index e9e9254..069235a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "physiofit" -version = "3.3.3" +version = "3.3.4" description = "Calculate extracellular fluxes from metabolite concentrations and biomass data" authors = ["llegregam "] license = "GNU General Public License (GPL)"