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Build.PL
'Configuration Instructions.txt'
docs/wiki/ModelDriver.wiki
ignore.txt
lib/BuildEnv/build.perl
lib/BuildEnv/module-list
lib/BuildEnv/ms-build-modules.pl
lib/BuildEnv/ms-build-perl.sh
lib/FigKernelPackages/Tracer.pm
lib/ModelSEED/App/bio.pm
lib/ModelSEED/App/mseed.pm
lib/ModelSEED/App/mseed/Command/error.pm
lib/ModelSEED/App/mseed/Command/get.pm
lib/ModelSEED/App/mseed/Command/list.pm
lib/ModelSEED/App/mseed/Command/login.pm
lib/ModelSEED/App/mseed/Command/logout.pm
lib/ModelSEED/App/mseed/Command/stores.pm
lib/ModelSEED/App/mseed/Command/whoami.pm
lib/ModelSEED/App/stores.pm
lib/ModelSEED/App/stores/Command/add.pm
lib/ModelSEED/App/stores/Command/list.pm
lib/ModelSEED/App/stores/Command/prioritize.pm
lib/ModelSEED/App/stores/Command/rm.pm
lib/ModelSEED/Auth.pm
lib/ModelSEED/Auth/Basic.pm
lib/ModelSEED/Auth/Public.pm
lib/ModelSEED/Configuration.pm
lib/ModelSEED/CoreApi.pm
lib/ModelSEED/CoreApi2.pm
lib/ModelSEED/Database.pm
lib/ModelSEED/Database/Composite.pm
lib/ModelSEED/Database/FileDB.pm
lib/ModelSEED/Database/MongoDB.pm
lib/ModelSEED/FIGMODEL.pm
lib/ModelSEED/FIGMODEL/FIGMODELcompound.pm
lib/ModelSEED/FIGMODEL/FIGMODELdata.pm
lib/ModelSEED/FIGMODEL/FIGMODELdatabase.pm
lib/ModelSEED/FIGMODEL/FIGMODELfba.pm
lib/ModelSEED/FIGMODEL/FIGMODELgenome.pm
lib/ModelSEED/FIGMODEL/FIGMODELinterval.pm
lib/ModelSEED/FIGMODEL/FIGMODELmapping.pm
lib/ModelSEED/FIGMODEL/FIGMODELmedia.pm
lib/ModelSEED/FIGMODEL/FIGMODELmodel.pm
lib/ModelSEED/FIGMODEL/FIGMODELObject.pm
lib/ModelSEED/FIGMODEL/FIGMODELreaction.pm
lib/ModelSEED/FIGMODEL/FIGMODELrole.pm
lib/ModelSEED/FIGMODEL/FIGMODELTable.pm
lib/ModelSEED/FIGMODEL/FIGMODELTableRow.pm
lib/ModelSEED/FIGMODEL/FIGMODELweb.pm
lib/ModelSEED/FIGMODEL/media.pm
lib/ModelSEED/FIGMODEL/queue.pm
lib/ModelSEED/FIGMODEL/regmodel.pm
lib/ModelSEED/FIGMODELConfig.txt
lib/ModelSEED/FIGMODELscheduler.pl
lib/ModelSEED/GapfillingDB/CPD.pm
lib/ModelSEED/GapfillingDB/CPDGAP.pm
lib/ModelSEED/GapfillingDB/CPDGAPMDL.pm
lib/ModelSEED/GapfillingDB/CPDMDL.pm
lib/ModelSEED/GapfillingDB/GapfillingDB.xml
lib/ModelSEED/GapfillingDB/GAPMDL.pm
lib/ModelSEED/GapfillingDB/GAPREP.pm
lib/ModelSEED/GapfillingDB/GAPREPMDL.pm
lib/ModelSEED/GapfillingDB/ObjectBase.pm
lib/ModelSEED/GapfillingDB/REPMDL.pm
lib/ModelSEED/GapfillingDB/RXN.pm
lib/ModelSEED/generatePriceData.pm
lib/ModelSEED/globals.pm
lib/ModelSEED/Interface/interface.pm
lib/ModelSEED/JobDriver.pl
lib/ModelSEED/modelapi.pm
lib/ModelSEED/ModelDB.sql
lib/ModelSEED/ModelDB.sqlite
lib/ModelSEED/ModelDB/BIOLOG_SIGNALS.pm
lib/ModelSEED/ModelDB/BIOMASS.pm
lib/ModelSEED/ModelDB/COMMENT.pm
lib/ModelSEED/ModelDB/COMPARTMENTS.pm
lib/ModelSEED/ModelDB/COMPLEX.pm
lib/ModelSEED/ModelDB/COMPLEX_ROLE.pm
lib/ModelSEED/ModelDB/COMPOUND.pm
lib/ModelSEED/ModelDB/COMPOUND_ALIAS.pm
lib/ModelSEED/ModelDB/COMPOUND_BIOMASS.pm
lib/ModelSEED/ModelDB/COMPOUND_GROUPING.pm
lib/ModelSEED/ModelDB/COMPOUND_REACTION.pm
lib/ModelSEED/ModelDB/CURRENTID.pm
lib/ModelSEED/ModelDB/DBENTITY.pm
lib/ModelSEED/ModelDB/DBLINKS.pm
lib/ModelSEED/ModelDB/DIAGRAM.pm
lib/ModelSEED/ModelDB/DIAGRAM_OBJECTS.pm
lib/ModelSEED/ModelDB/ESSENTIALITYSET.pm
lib/ModelSEED/ModelDB/EXPERIMENT.pm
lib/ModelSEED/ModelDB/FBA_RESULTS.pm
lib/ModelSEED/ModelDB/GENE_ESSENTIALITY.pm
lib/ModelSEED/ModelDB/GENOMESTATS.pm
lib/ModelSEED/ModelDB/HISTORY.pm
lib/ModelSEED/ModelDB/MEDIA.pm
lib/ModelSEED/ModelDB/MEDIA_COMPOUND.pm
lib/ModelSEED/ModelDB/MESSAGE.pm
lib/ModelSEED/ModelDB/MODEL.pm
lib/ModelSEED/ModelDB/MODEL_ESSENTIALITY.pm
lib/ModelSEED/ModelDB/MODEL_FVA.pm
lib/ModelSEED/ModelDB/ModelDB.xml
lib/ModelSEED/ModelDB/MODELVERSIONS.pm
lib/ModelSEED/ModelDB/ObjectBase.pm
lib/ModelSEED/ModelDB/OUTPUTID.pm
lib/ModelSEED/ModelDB/PERMISSIONS.pm
lib/ModelSEED/ModelDB/REACTION.pm
lib/ModelSEED/ModelDB/REACTION_ALIAS.pm
lib/ModelSEED/ModelDB/REACTION_COMPLEX.pm
lib/ModelSEED/ModelDB/REACTION_GROUPING.pm
lib/ModelSEED/ModelDB/REACTION_MODEL.pm
lib/ModelSEED/ModelDB/REFERENCE.pm
lib/ModelSEED/ModelDB/ROLE.pm
lib/ModelSEED/ModelDB/SUBSYSTEM.pm
lib/ModelSEED/ModelDB/SUBSYSTEM_ROLE.pm
lib/ModelSEED/ModelDB/USERS.pm
lib/ModelSEED/ModelDB/UserSession.pm
lib/ModelSEED/ModelDriver.pl
lib/ModelSEED/ModelDriver.pm
lib/ModelSEED/ModelDriverV2.pl
lib/ModelSEED/ModelDriverV2.pm
lib/ModelSEED/ModelSEEDClients/FBAMODELClient.pm
lib/ModelSEED/ModelSEEDClients/ModelDBserver.pm
lib/ModelSEED/ModelSEEDClients/ModelSEEDCommandAPIClient.pm
lib/ModelSEED/ModelSEEDClients/MSSeedSupportClient.pm
lib/ModelSEED/ModelSEEDClients/t/FBAMODEL.t
lib/ModelSEED/ModelSEEDClients/t/ModelSEEDCommandAPIClient.t
lib/ModelSEED/ModelSEEDClients/t/MSSeedSupportClient.t
lib/ModelSEED/ModelSEEDScripts/biochem_test.pl
lib/ModelSEED/ModelSEEDScripts/bootstrap.sh
lib/ModelSEED/ModelSEEDScripts/build-modelseed-sqlite-db
lib/ModelSEED/ModelSEEDScripts/build-test-db
lib/ModelSEED/ModelSEEDScripts/ChargeMolfiles.pl
lib/ModelSEED/ModelSEEDScripts/configureMFAToolkit.pl
lib/ModelSEED/ModelSEEDScripts/core_api_test.pl
lib/ModelSEED/ModelSEEDScripts/define_fatty_acid_groups.pl
lib/ModelSEED/ModelSEEDScripts/delete-old-files.pl
lib/ModelSEED/ModelSEEDScripts/diffDirectories.pl
lib/ModelSEED/ModelSEEDScripts/dumb-importer.pl
lib/ModelSEED/ModelSEEDScripts/exportPodWiki.pl
lib/ModelSEED/ModelSEEDScripts/filterModelGenes.pl
lib/ModelSEED/ModelSEEDScripts/generateTablesForKbase.pl
lib/ModelSEED/ModelSEEDScripts/MiscScripts.pl
lib/ModelSEED/ModelSEEDScripts/ModelReconstruction.pl
lib/ModelSEED/ModelSEEDScripts/ms-config.pl
lib/ModelSEED/ModelSEEDScripts/ms-create-wiki-docs.pl
lib/ModelSEED/ModelSEEDScripts/ms-install-database
lib/ModelSEED/ModelSEEDScripts/ms-load-mysql.pl
lib/ModelSEED/ModelSEEDScripts/ms-resetdatabase.pl
lib/ModelSEED/ModelSEEDScripts/ObjectBuilder.pl
lib/ModelSEED/ModelSEEDScripts/ParsePrimerData.pl
lib/ModelSEED/ModelSEEDScripts/parseRoseObjects.pl
lib/ModelSEED/ModelSEEDScripts/QuickConvert.pm
lib/ModelSEED/ModelSEEDScripts/resolve-cpd-KEGG-aliases.pl
lib/ModelSEED/ModelSEEDScripts/resolve-rxn-KEGG-aliases.pl
lib/ModelSEED/ModelSEEDScripts/switch-modeldb.pl
lib/ModelSEED/ModelSEEDScripts/unpack-model-db.pl
lib/ModelSEED/ModelSEEDUtilities/FileIOFunctions.pm
lib/ModelSEED/MooseDB/media.pm
lib/ModelSEED/MooseDB/mediacpd.pm
lib/ModelSEED/MooseDB/object.pm
lib/ModelSEED/MooseDB/user.pm
lib/ModelSEED/MS/Annotation.pm
lib/ModelSEED/MS/BaseObject.pm
lib/ModelSEED/MS/Biochemistry.pm
lib/ModelSEED/MS/Biomass.pm
lib/ModelSEED/MS/BiomassCompound.pm
lib/ModelSEED/MS/BiomassTemplate.pm
lib/ModelSEED/MS/BiomassTemplateComponent.pm
lib/ModelSEED/MS/Compartment.pm
lib/ModelSEED/MS/Complex.pm
lib/ModelSEED/MS/ComplexRole.pm
lib/ModelSEED/MS/Compound.pm
lib/ModelSEED/MS/CompoundCue.pm
lib/ModelSEED/MS/CompoundPk.pm
lib/ModelSEED/MS/CompoundSet.pm
lib/ModelSEED/MS/CompoundSetCompound.pm
lib/ModelSEED/MS/CompoundStructure.pm
lib/ModelSEED/MS/Constraint.pm
lib/ModelSEED/MS/ConstraintVariable.pm
lib/ModelSEED/MS/Cue.pm
lib/ModelSEED/MS/DB/Annotation.pm
lib/ModelSEED/MS/DB/Biochemistry.pm
lib/ModelSEED/MS/DB/Biomass.pm
lib/ModelSEED/MS/DB/BiomassCompound.pm
lib/ModelSEED/MS/DB/BiomassTemplate.pm
lib/ModelSEED/MS/DB/BiomassTemplateComponent.pm
lib/ModelSEED/MS/DB/Compartment.pm
lib/ModelSEED/MS/DB/Complex.pm
lib/ModelSEED/MS/DB/ComplexRole.pm
lib/ModelSEED/MS/DB/Compound.pm
lib/ModelSEED/MS/DB/CompoundCue.pm
lib/ModelSEED/MS/DB/CompoundPk.pm
lib/ModelSEED/MS/DB/CompoundSet.pm
lib/ModelSEED/MS/DB/CompoundSetCompound.pm
lib/ModelSEED/MS/DB/CompoundStructure.pm
lib/ModelSEED/MS/DB/Constraint.pm
lib/ModelSEED/MS/DB/ConstraintVariable.pm
lib/ModelSEED/MS/DB/Cue.pm
lib/ModelSEED/MS/DB/Deletion.pm
lib/ModelSEED/MS/DB/Experiment.pm
lib/ModelSEED/MS/DB/ExperimentDataPoint.pm
lib/ModelSEED/MS/DB/FBACompoundVariable.pm
lib/ModelSEED/MS/DB/FBAFormulation.pm
lib/ModelSEED/MS/DB/FBAObjectiveTerm.pm
lib/ModelSEED/MS/DB/FBAProblem.pm
lib/ModelSEED/MS/DB/FBAReactionVariable.pm
lib/ModelSEED/MS/DB/Feature.pm
lib/ModelSEED/MS/DB/FeatureRole.pm
lib/ModelSEED/MS/DB/FluxMeasurement.pm
lib/ModelSEED/MS/DB/GeneMeasurement.pm
lib/ModelSEED/MS/DB/Genome.pm
lib/ModelSEED/MS/DB/Insertion.pm
lib/ModelSEED/MS/DB/Mapping.pm
lib/ModelSEED/MS/DB/Media.pm
lib/ModelSEED/MS/DB/MediaCompound.pm
lib/ModelSEED/MS/DB/MetaboliteMeasurement.pm
lib/ModelSEED/MS/DB/Model.pm
lib/ModelSEED/MS/DB/ModelCompartment.pm
lib/ModelSEED/MS/DB/ModelCompound.pm
lib/ModelSEED/MS/DB/ModelReaction.pm
lib/ModelSEED/MS/DB/ModelReactionReagent.pm
lib/ModelSEED/MS/DB/ObjectiveTerm.pm
lib/ModelSEED/MS/DB/Reaction.pm
lib/ModelSEED/MS/DB/ReactionCue.pm
lib/ModelSEED/MS/DB/ReactionSet.pm
lib/ModelSEED/MS/DB/ReactionSetReaction.pm
lib/ModelSEED/MS/DB/Reagent.pm
lib/ModelSEED/MS/DB/Role.pm
lib/ModelSEED/MS/DB/RoleSetRole.pm
lib/ModelSEED/MS/DB/Strain.pm
lib/ModelSEED/MS/DB/SubsystemState.pm
lib/ModelSEED/MS/DB/UniversalReaction.pm
lib/ModelSEED/MS/DB/UptakeMeasurement.pm
lib/ModelSEED/MS/DB/User.pm
lib/ModelSEED/MS/DB/Variable.pm
lib/ModelSEED/MS/Deletion.pm
lib/ModelSEED/MS/Environment.pm
lib/ModelSEED/MS/Experiment.pm
lib/ModelSEED/MS/ExperimentDataPoint.pm
lib/ModelSEED/MS/Factories/PPOFactory.pm
lib/ModelSEED/MS/Factories/SEEDFactory.pm
lib/ModelSEED/MS/FBAFormulation.pm
lib/ModelSEED/MS/FBAObjectiveTerm.pm
lib/ModelSEED/MS/FBAProblem.pm
lib/ModelSEED/MS/FBAReactionConstraint.pm
lib/ModelSEED/MS/FBAReactionVariable.pm
lib/ModelSEED/MS/Feature.pm
lib/ModelSEED/MS/FeatureRole.pm
lib/ModelSEED/MS/FluxMeasurement.pm
lib/ModelSEED/MS/GeneMeasurement.pm
lib/ModelSEED/MS/Genome.pm
lib/ModelSEED/MS/IndexedObject.pm
lib/ModelSEED/MS/Insertion.pm
lib/ModelSEED/MS/InstanceTransport.pm
lib/ModelSEED/MS/Mapping.pm
lib/ModelSEED/MS/Media.pm
lib/ModelSEED/MS/MediaCompound.pm
lib/ModelSEED/MS/MetaboliteMeasurement.pm
lib/ModelSEED/MS/Metadata/Definitions.pm
lib/ModelSEED/MS/Metadata/Types.pm
lib/ModelSEED/MS/Model.pm
lib/ModelSEED/MS/ModelCompartment.pm
lib/ModelSEED/MS/ModelCompound.pm
lib/ModelSEED/MS/ModelReaction.pm
lib/ModelSEED/MS/ModelReactionReagent.pm
lib/ModelSEED/MS/ObjectiveTerm.pm
lib/ModelSEED/MS/Reaction.pm
lib/ModelSEED/MS/ReactionCue.pm
lib/ModelSEED/MS/ReactionSet.pm
lib/ModelSEED/MS/ReactionSetReaction.pm
lib/ModelSEED/MS/Reagent.pm
lib/ModelSEED/MS/Role.pm
lib/ModelSEED/MS/RoleSet.pm
lib/ModelSEED/MS/RoleSetRole.pm
lib/ModelSEED/MS/Strain.pm
lib/ModelSEED/MS/SubsystemState.pm
lib/ModelSEED/MS/UniversalReaction.pm
lib/ModelSEED/MS/UptakeMeasurement.pm
lib/ModelSEED/MS/User.pm
lib/ModelSEED/MS/Utilities/GlobalFunctions.pm
lib/ModelSEED/MS/Utilities/SimpleTable.pm
lib/ModelSEED/MS/Variable.pm
lib/ModelSEED/SchedulerDB/JOB.pm
lib/ModelSEED/SchedulerDB/ObjectBase.pm
lib/ModelSEED/SchedulerDB/QUEUE.pm
lib/ModelSEED/SchedulerDB/SchedulerDB.xml
lib/ModelSEED/ServerBackends/FBAMODEL.pm
lib/ModelSEED/ServerBackends/ModelSEEDCommandAPI.pm
lib/ModelSEED/ServerBackends/MSSeedSupport.pm
lib/ModelSEED/ServerBackends/t/FBAMODEL.t
lib/ModelSEED/ServerBackends/t/MSSeedSupport.t
lib/ModelSEED/ServerBackends/TempModelSEEDCommandAPI.pm
lib/ModelSEED/Settings.config
lib/ModelSEED/Store.pm
lib/ModelSEED/Store/Private.pm
lib/ModelSEED/StrainDB/CONTIG.pm
lib/ModelSEED/StrainDB/CONTIGPRIMER.pm
lib/ModelSEED/StrainDB/EXPERIMENTER.pm
lib/ModelSEED/StrainDB/FEATURE.pm
lib/ModelSEED/StrainDB/FEATURE_ALIAS.pm
lib/ModelSEED/StrainDB/FEATURE_CONTIG.pm
lib/ModelSEED/StrainDB/ObjectBase.pm
lib/ModelSEED/StrainDB/OldStrainDB.xml
lib/ModelSEED/StrainDB/PHENOTYPE.pm
lib/ModelSEED/StrainDB/PREDICTIONS.pm
lib/ModelSEED/StrainDB/STRAIN.pm
lib/ModelSEED/StrainDB/STRAIN_CONTIG.pm
lib/ModelSEED/StrainDB/StrainDB.xml
lib/ModelSEED/TestingHelpers.pm
lib/ModelSEED/utilities.pm
lib/ModelSEEDScripts/strain_database_dump.pl
lib/ModelSEEDScripts/svr_all_compounds.pl
lib/ModelSEEDScripts/svr_all_models.pl
lib/ModelSEEDScripts/svr_all_reactions.pl
lib/ModelSEEDScripts/svr_get_compound_data.pl
lib/ModelSEEDScripts/svr_get_model_data.pl
lib/ModelSEEDScripts/svr_get_model_rxn.pl
lib/ModelSEEDScripts/svr_get_reaction_data.pl
lib/ModelSEEDScripts/svr_model_data.pl
lib/ModelSEEDScripts/svr_model_diff.pl
lib/ModelSEEDScripts/svr_model_stats.pl
lib/ModelSEEDScripts/svr_model_status.pl
lib/ModelSEEDScripts/svr_my_models.pl
lib/ModelSEEDScripts/svr_retreive_model.pl
lib/ModelSEEDScripts/svr_run_gene_activity_simulation.pl
lib/ModelSEEDScripts/svr_run_model_fba.pl
lib/PPO/DBMaster.pm
lib/PPO/DBObject.pm
lib/PPO/DBObjectCache.pm
lib/PPO/DBSQLArray.pm
lib/PPO/ppo_generate.pl
lib/PPO/ppo_sqlite_copy.pl
lib/PPO/PPOBackend.pm
lib/PPO/PPOBackend/MySQL.pm
lib/PPO/PPOBackend/SQLite.pm
lib/PPO/PPOGenerator.pm
LICENSE.TXT
MANIFEST This list of files
MANIFEST.bak
MANIFEST.SKIP
software/mfatoolkit/Include/AtomCPP.h
software/mfatoolkit/Include/AtomType.h
software/mfatoolkit/Include/CPLEXapi.h
software/mfatoolkit/Include/Data.h
software/mfatoolkit/Include/Definitions.h
software/mfatoolkit/Include/Gene.h
software/mfatoolkit/Include/GeneInterval.h
software/mfatoolkit/Include/GlobalFunctions.h
software/mfatoolkit/Include/GLPKapi.h
software/mfatoolkit/Include/Identity.h
software/mfatoolkit/Include/InterfaceFunctions.h
software/mfatoolkit/Include/LINDOapi.h
software/mfatoolkit/Include/MFAProblem.h
software/mfatoolkit/Include/MFAToolkit.h
software/mfatoolkit/Include/Reaction.h
software/mfatoolkit/Include/SCIPapi.h
software/mfatoolkit/Include/SolverInterface.h
software/mfatoolkit/Include/Species.h
software/mfatoolkit/Include/stringDB.h
software/mfatoolkit/Include/UtilityFunctions.h
software/mfatoolkit/Input/Argonne.txt
software/mfatoolkit/Input/AtomTypes.dat
software/mfatoolkit/Input/Compartments.dat
software/mfatoolkit/Input/FileReferences.dat
software/mfatoolkit/Input/FinalGroups.dat
software/mfatoolkit/Input/FunctionRoleMapping.txt
software/mfatoolkit/Input/GroupTranslation.txt
software/mfatoolkit/Input/HopeScenarios.txt
software/mfatoolkit/Input/ReactionDatabase.txt
software/mfatoolkit/Linux/makefile
software/mfatoolkit/Linux/mfatoolkit
software/mfatoolkit/Linux/SystemParameters.txt
software/mfatoolkit/Parameters/ArgonneProcessing.txt
software/mfatoolkit/Parameters/Defaults.txt
software/mfatoolkit/Parameters/GapFilling.txt
software/mfatoolkit/Parameters/GapGeneration.txt
software/mfatoolkit/Parameters/ProductionMFA.txt
software/mfatoolkit/Source/AtomCPP.cpp
software/mfatoolkit/Source/AtomType.cpp
software/mfatoolkit/Source/CPLEXapi.cpp
software/mfatoolkit/Source/CPLEXapiEMPTY.cpp
software/mfatoolkit/Source/Data.cpp
software/mfatoolkit/Source/driver.cpp
software/mfatoolkit/Source/FullSCIPapi.cpp
software/mfatoolkit/Source/Gene.cpp
software/mfatoolkit/Source/GeneInterval.cpp
software/mfatoolkit/Source/GlobalFunctions.cpp
software/mfatoolkit/Source/GLPKapi.cpp
software/mfatoolkit/Source/GLPKapiEMPTY.cpp
software/mfatoolkit/Source/Identity.cpp
software/mfatoolkit/Source/InterfaceFunctions.cpp
software/mfatoolkit/Source/LINDOapi.cpp
software/mfatoolkit/Source/LINDOapiEMPTY.cpp
software/mfatoolkit/Source/MFAProblem.cpp
software/mfatoolkit/Source/Reaction.cpp
software/mfatoolkit/Source/SCIPapi.cpp
software/mfatoolkit/Source/SCIPapiEMPTY.cpp
software/mfatoolkit/Source/SolverInterface.cpp
software/mfatoolkit/Source/Species.cpp
software/mfatoolkit/Source/stringDB.cpp
software/mfatoolkit/Source/UtilityFunctions.cpp
t/00-load.t
t/Auth/Basic.t
t/Auth/Public.t
t/boilerplate.t
t/Configuration.t
t/data-import.t
t/database/FileDB.t
t/database/FileDBSpeed.t
t/database/MongoDB.t
t/FIGMODEL.t
t/figmodel/FIGMODELdatabase.t
t/figmodel/FIGMODELfba.t
t/figmodel/FIGMODELgenome.t
t/figmodel/FIGMODELmodel.t
t/figmodel/FIGMODELTable.t
t/figmodel/queue.t
t/interface/interface.t
t/manifest.t
t/ms/biochemistry-object.json
t/ms/Biochemistry.t
t/ms/Compartment.t
t/ms/factories/Biochemistry.t
t/ms/factories/SEEDFactory.t
t/ms/Media.t
t/ms/Reaction.t
t/pod-coverage.t
t/pod.t
t/require.t
t/Store.t
t/store/Private.t
t/TestingHelpers.t