Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Issues with aerobactin #231

Open
smoretti opened this issue Sep 25, 2020 · 0 comments
Open

Issues with aerobactin #231

smoretti opened this issue Sep 25, 2020 · 0 comments

Comments

@smoretti
Copy link

Hi

we found several issues with aerobactin compounds in ModelSEED.

  • cpd26452 SMILES looks to be invalid according to chemaxon and smiles drawer at least.
    Should be something like
    CC(=O)N(O)CCCC[C@H](NC(=O)CC(O)(CC(=O)N[C@@H](CCCCN(O)C(C)=O)C([O-])=O)C([O-])=O)C([O-])=O.[Fe]
  • cpd03294 is aerobactin without Fe according to InChI, SMILES and formula. But it is involved in reactions such as rxn08144 that transform it in "Fe + aerobactin minus Fe3"
Fe+3 + aerobactin minus Fe3 <= Aerobactin
cpd10516 + cpd15411 <= cpd03294
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant