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Empty reactions in templates #87

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samseaver opened this issue Feb 6, 2018 · 0 comments
Open

Empty reactions in templates #87

samseaver opened this issue Feb 6, 2018 · 0 comments

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@samseaver
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It appears that a reaction that is empty, i.e. does not have products or reagents, is available in the microbial templates:

ModelSEEDDatabase/Templates$ grep rxn14003 */* | cut -f1,2,3,4
Core/Reactions.tsv:rxn14003     c|e     =       =
GramNegative/Reactions.tsv:rxn14003     c|e     =       =
GramPositive/Reactions.tsv:rxn14003     c|e     =       =
Human/Reactions.tsv:rxn14003    c0|e0   =       =
Microbial/Reactions.tsv:rxn14003        c|e     =       =
Mycobacteria/Reactions.tsv:rxn14003     c0|e0   =       =

To be clear, an "empty" reaction wasn't originally empty, but it's reagents and products balanced each other other. This is the reaction in this case, as defined in KEGG:

http://www.genome.jp/dbget-bin/www_bget?R00124

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