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Question: how to get channel map to use for KS2.5 and KS3 #861

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David-H-Chang opened this issue Feb 2, 2025 · 1 comment
Open

Question: how to get channel map to use for KS2.5 and KS3 #861

David-H-Chang opened this issue Feb 2, 2025 · 1 comment

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@David-H-Chang
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Hey, everybody!
I select my interested channel while performing NPX recording. So my channel map is not defaulted neuropixPhase3A_kilosortChanMap.mat. How can I generate corresponding chanmap used for KS2.5 and KS3 given my raw data (such as file ends with t0.imec.ap.meta)

@jacobpennington
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You can use this utility to generate a probe file from the metadata: https://github.com/jenniferColonell/SGLXMetaToCoords

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