tested on SRR18576017, ilPecGoss1.1

[amcooksey]

Worked correctly, took about 50 hours of runtime.
The one quirk is that the index files will be created in the working directory regardless of where the genome fasta is. When you run the main.cwl the fasta and the index files must all be in the same place.

[mpoelchau]

Thanks @amcooksey !

Can you look into how to load the track into Jbrowse next?