Merging fmuni branch: OpenFOAM-13 (#156)

* Update to disengagement tutorial

* Added pressure difference option to disengagement functionObject

* Added proper reading of limiter parameters to coalescence and breakup models

* Fixed debug code wrongfully added to commit

* Added case for kestrel

* Added new test case

* Added interface capture method

* added moon case

* added switches for interface algorithms

* Added openfoam12 solver
* BubbleColumnLES test works with the new of12 module. Uses populationBalance and mass transfer.
* mesh_500mL generates a STR mesh using snappyHexMesh

* update to new mesh test

* Added interfaceTracking scheme to oF12 solver
* The old solver is updated as well as some stuff was missing
* The new solver also checks for anisotropy in the variations to discard local maxima/minima from the interface

* Added rotating mesh case

* Added missing stl file

* Update to rotating STR and of12 solver
* Removed critical point check for interface tracking. I have to think it through a bit more.
* Updated rotating mesh STR with correct patch creation
* Added compression and interface tracking to rotating mesh STR tutorial
* Rotating mesh STR has been succesfully tested for air/water in Earth, Moon, and space gravity

* Writes Su and Sp for dmdi

This can be used to compute the kLA. First compute mdoti = Su + Sp*Yi (no matter the phase). Then kLA = mdoti / ( Yi,g - Yi,l ) with sign depending on the phase chosen for computing mdoti.

* It was better to just compute the dmidtf to avoid issues

* Added dmidtf to header file

* Update to rotating mesh experimental case
* New geometry and properties
* Added switch for disabling energy solution

* Added BioReacting phase model
* This model is an alternative to the reactingPhase model that adds an uptake rate to a specie.
  The DCW should be provided as a scalarField.

* update to rotating mesh

* upgrade to OF13

* Added baffles

* Update to bioreacting model for multiple reactions

* Added post for writing kLA

* Added kLA with correlations

* Added modifications to BioReactingPhaseModel

* Update T.liquid

* added study case

* Update case for heat transfer

* Added disengagement function object

* Added Higbie model

* Added function object to write kLA during simulation

* Added multi-step method for solving the energy equations
* In each phase, the interphase heat exchange is computed via an equation for the temperature
* After solving for the phase temperature, the enthalpy is updated based on the temperature difference
* The equation for the enthalpy without the interphase exchange is then solved as usual

* Added Grace drag model

* Added OF13 bubble column test

* Fixed alternative algorithm for energy

* Fixes to disengagement and kLA functionObjects
* disengagement now works with holdup rather than center of mass
* disengagement can now be used properly without disengaging (if one is only interested in the holdup)
* Internal field error fixed in kLA

* Added Kevin case for OpenFOAM 13
* Boilerplate case for mass transfer, bacteria, etc.
* Uses local time stepping.
* Employs kLA and disengagement function objects to assess convergence.
* Can work with higher order schemes and Euler time stepping as well. Corresponding settings are commented.
* Tested at Co = 2 when unsteady.

* Added alternative heat transfer algorithm

* Reverted to old disengagement

* Fixed issues in Grace model

* Added limited Laakkonen and LMM models

* Added efficiency to binary LMM breakup model

* added mesh for Will

* Fixed crash with Grace model

* Holdup-based disengagement. Center of mass wasn't good enough.

* update to kLA function object

* Added 1200RPM case

* Fixed str1200RPM case

* Added geometry for salome

* Added formic acid case

* Added new mesh case

* Added STR350

* Update to STR350

* Added optional turbulence correctors for better coupling and robustness

* Added new case for space bioreactor

* Added missing folder

* Update to rotating case

* Added case with MRF and new mesh

* Added OFtutorials with gas species

* Added new tetra case and geometry

* Add README for tetrahedron tutorial

Added a README file for the tetrahedron unstructured grid tutorial, detailing features, usage, and example results.

* Specify volume in oxygen sparging tutorial

* Fix file copy command for STR.zip

Copy STR.zip to the current directory before unzipping.

* Added switch to disable energy and composition solution

* Tutorials restructuring
* Added tutorial for rotating mesh
* Removed obsolete tutorials
* Data such as figs is in its separate directory
* Renamed MRF tutorial

* Removed old rotating tutorial

* Update to tutorial

* Added python mesh

* Fixed bug on Allwclean and cleaner switches for energy and species

* Fix to Allmesh in rotating tutorial

* Added density stabilization and smoothing to surface tension force

* Restructuring for PR
--------------------

* Organized and separated old OF9 and new OF13 solvers
* Separated tutorials
* Separated experimental cases

* removed unused cases

* Updates for PR

* Update to tests

* Mod to ci.yml

* Update to documentation

* Removed experimental cases for OF13

* cleaned STR_rotating tutorial

* cleaned STR_MRF tutorial

* removed unused data and geometry folders

* Added test workflow for OF13
* Added --test option to Allrun scripts that allows to run one step on one core and reports the test success
* Added missing Allclean scripts
* ci file modified accordingly
* Added README.md to bubble_column tutorial

* Update to documentation
* Update to index.rst to include OpenFOAM-13
* Update to multiphase.rst with newer models in multiphaseEuler

* Fixed typos in doc and workflow

Author: malihass

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