README.md

make biom

biom convert -i genus.xls -o genus.biom --table-type "OTU table" --process-obs-metadata naive --to-hdf5

wilcoxon test

wilcox.py -i genus.xls -c LT_S_LT_L -g map.LT_S_LT_L.txt -o LT_S-LT_L.wilcox.genus.xls

Random forest

random_forest4key_out_select.pl genus.biom genus.xls map.LT_S_LT_L.txt 0.001

RFCV & ROC

# The default value of 'c' is 19,which is changable.
# cross validation
Rscript RFCV.R
## ROC
perl RFCV2ROC.pl genus.xls feature_importance_scores.txt LT_S-LT_L.wilcox.genus.xls map.LT_S_LT_L.txt 16