diff --git a/Changelog b/Changelog index 75ede897..d68f1376 100644 --- a/Changelog +++ b/Changelog @@ -2,7 +2,7 @@ - Added the protein start and end positions to ions and peptides report. - ProtXML reading parallelization. - Added a new Extended Peptide column to the PSM report containing the flanking regions of peptides. -- Group-based FDR scoring capabilities that will rely on the fdr_group passed by MSFragger. +- Group-based FDR scoring capabilities that will rely on the group passed by MSFragger. - Support for sCLIP isobaric tags. ### Changed diff --git a/Makefile b/Makefile index 2d13d39e..8be1f0f6 100644 --- a/Makefile +++ b/Makefile @@ -7,7 +7,7 @@ VERSION = $(shell date +%Y%m%d) BUILD = $(shell date +%Y%m%d%H%M) TAG = v5.0.0 -RC = RC23 +RC = RC24 LDFLAGS = -ldflags "-w -s -extldflags -static -X main.version=${TAG} -X main.build=${BUILD}" diff --git a/cmd/filter.go b/cmd/filter.go index a3281d10..763ae601 100644 --- a/cmd/filter.go +++ b/cmd/filter.go @@ -81,7 +81,7 @@ func init() { filterCmd.Flags().BoolVarP(&m.Filter.Picked, "picked", "", false, "apply the picked FDR algorithm before the protein scoring") filterCmd.Flags().BoolVarP(&m.Filter.Mapmods, "mapmods", "", false, "map modifications") filterCmd.Flags().BoolVarP(&m.Filter.Inference, "inference", "", false, "extremely fast and efficient protein inference compatible with 2D and Sequential filters") - filterCmd.Flags().BoolVarP(&m.Filter.Group, "group", "", false, "use the fdr_group label to filter the data") + filterCmd.Flags().BoolVarP(&m.Filter.Group, "group", "", false, "use the group label to filter the data") filterCmd.Flags().MarkHidden("mods") filterCmd.Flags().MarkHidden("delta") filterCmd.Flags().MarkHidden("probin") diff --git a/lib/spc/pepxml.go b/lib/spc/pepxml.go index 3be2941d..23f052e2 100644 --- a/lib/spc/pepxml.go +++ b/lib/spc/pepxml.go @@ -141,7 +141,7 @@ type SearchHit struct { PrevAA []byte `xml:"peptide_prev_aa,attr"` NextAA []byte `xml:"peptide_next_aa,attr"` Protein []byte `xml:"protein,attr"` - Class []byte `xml:"fdr_group,attr"` + Class []byte `xml:"group,attr"` TotalTerm uint8 `xml:"num_tol_term,attr"` MissedCleavages uint8 `xml:"num_missed_cleavages,attr"` IsRejected uint8 `xml:"is_rejected,attr"`