thesis-header.tex

% this file contains the LaTeX preamble and loads all necessary packages
% you shouldn't need to edit this

% better printing of numbers
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage[english]{babel}
\usepackage{csquotes}
\usepackage{textcomp}

\usepackage{lmodern}

% used to provide "lorem ipsum" placeholder text
\usepackage{blindtext}

% used to put quotes at the beginning of a chapter
\usepackage{epigraph}
\renewcommand{\epigraphsize}{\footnotesize}

%\usepackage{subfiles}

\usepackage[activate={true,nocompatibility},final,tracking=true,kerning=true,spacing=true,factor=1100,stretch=10,shrink=10]{microtype}
\usepackage{xspace}
\microtypecontext{spacing=nonfrench}

\usepackage{latexsym, amsmath, amssymb, amsfonts}
\usepackage{graphicx, color, xcolor, wrapfig, subcaption}

\usepackage[hyphens]{url}
\usepackage[breaklinks=true, linkcolor=blue, citecolor=blue, colorlinks=true]{hyperref}
\newcommand*{\doi}[1]{\href{https://doi.org/#1}{\nolinkurl{https://doi.org/#1}}}

\usepackage[backend=biber,
            hyperref=true,
            autolang=hyphen,
            style=phys,
            biblabel=brackets,
            citestyle=numeric-comp,
            sorting=none,
            bibencoding=UTF-8,
            giveninits=true,
            maxbibnames=100,
            maxcitenames=3,
            terseinits=true,
            citetracker=true,
            doi=true,
            articletitle=true,
]{biblatex}

\addbibresource{refs.bib}

\setcounter{biburlnumpenalty}{1000}  % allow breaks at numbers
\setcounter{biburlucpenalty}{1000}   % allow breaks at uppercase letters
\setcounter{biburllcpenalty}{1000}   % allow breaks at lowercase letters
% remove "in: " from articles
\renewbibmacro{in:}{%
  \ifentrytype{article}{}{%
  \printtext{\bibstring{in}\intitlepunct}}
}
% do not include language
\AtEveryBibitem{%
  \clearlist{language}%
}

\newcommand{\pathprefix}{.}

\usepackage{algorithm}
\usepackage{algorithmic}
\usepackage{booktabs, multicol, multirow}

\usepackage{listings}

\usepackage{nicefrac}
\usepackage{bm}

\usepackage[version=4]{mhchem}

\usepackage[binary-units]{siunitx}
\sisetup{group-separator={,},
	detect-all,
	binary-units,
	list-units = single,
	range-units = single,
	range-phrase = --,
	per-mode = symbol-or-fraction,
	separate-uncertainty = true,
	multi-part-units = single,
	list-final-separator = {, and }
%    scientific-notation = fixed
}
\DeclareSIUnit\atm{atm}

\newcommand{ \ddt } [1] { \frac{ \partial #1 }{ \partial t } }
\newcommand{ \ddx } [1] { \frac{ \partial }{ \partial #1 } }
\newcommand{ \dydx } [2] { \frac{ \partial #1 }{ \partial #2 } }
\newcommand{ \ddydxx } [2] { \frac{ \partial^2 #1 }{ \partial #2^2 } }

\definecolor{dkgreen}{rgb}{0,0.6,0}
\definecolor{gray}{rgb}{0.5,0.5,0.5}
\definecolor{mauve}{rgb}{0.58,0,0.82}

\lstset{ %
  language=C,
  breaklines=true,
  columns=flexible,
  basicstyle=\tiny \ttfamily,
  backgroundcolor=\color{white},
  showspaces=false,
  showstringspaces=false,
  showtabs=false,
  frame=single,
  tabsize=2,
  captionpos=b,
  keywordstyle=\color{blue},
  commentstyle=\color{dkgreen},
}

% C++ macro
\def\CC{{C\nolinebreak[4]\hspace{-.05em}\raisebox{.4ex}{\footnotesize ++}}}

\usepackage{amsopn}
\DeclareMathOperator{\diag}{diag}
% Define commands to assure consistent treatment throughout document
\newcommand{\eqnref}[1]{(\ref{#1})}
\newcommand{\class}[1]{\texttt{#1}}
\newcommand{\package}[1]{\texttt{#1}}
\newcommand{\file}[1]{\texttt{#1}}
\newcommand{\BibTeX}{\textsc{Bib}\TeX}

% Need to get rid of additions
\usepackage[normalem]{ulem}
% *** Be very precise and careful about including whitespace and punctuation in your edits ***\
% For the version with changes, use these four commands

\usepackage{amsfonts}
\usepackage{epstopdf}
\ifpdf
  \DeclareGraphicsExtensions{.eps,.pdf,.png,.jpg}
\else
  \DeclareGraphicsExtensions{.eps}
\fi

\newcommand{\PaperHeader}[3]{
    %\phantom{}\newpage
    \phantom{}\vfill
    \begin{center}
    \heading
    #1
    \end{center}
    \vfill
    #2
    \vfill\noindent
    #3
    \vfill
}