config-encode-e11-5-limb-midbrain.json

{
  "encoders": [
    {
      "content_type": "dnase-seq-3kb",
      "from_file": "examples/autoencoders.json"
    },
    {
      "content_type": "histone-mark-chip-seq-3kb",
      "from_file": "examples/autoencoders.json"
    }
  ],
  "datasets": [
    {
      "filepath": "examples/data/ENCFF641OPE.bigWig",
      "content_type": "dnase-seq-3kb",
      "id": "encode-e11-5-limb-dnase-rdns",
      "name": "Limb: DNase rdn signal"
    },
    {
      "filepath": "examples/data/ENCFF336LAW.bigWig",
      "content_type": "histone-mark-chip-seq-3kb",
      "id": "encode-e11-5-limb-chip-h3k27ac-fc",
      "name": "Limb: H3K27ac fc"
    },
    {
      "filepath": "examples/data/ENCFF906WCV.bigWig",
      "content_type": "dnase-seq-3kb",
      "id": "encode-e11-5-midbrain-dnase-rdns",
      "name": "Midbrain: DNase rdn signal"
    },
    {
      "filepath": "examples/data/ENCFF847OYS.bigWig",
      "content_type": "histone-mark-chip-seq-3kb",
      "id": "encode-e11-5-midbrain-chip-h3k27ac-fc",
      "name": "Midbrain: H3K27ac fc"
    }
  ],
  "coords": "mm10",
  "chroms": ["chr1"],
  "step_freq": 2,
  "db_path": "examples/search-e11-5-limb-midbrain.db"
}