Fix documentation for new module structure and example paths

Author: RaulSimpetru

docs/source/modules/datatypes.rst

@@ -2,7 +2,7 @@
 Data Types
 ================
 
-Data types are used to store and process data in MyoVerse. They are used to store data in a structured way and to apply filters to the data.
+Data types are used to store and process data in MyoVerse. They are used to store data in a structured way.
 
 .. currentmodule:: myoverse.datatypes
 .. autosummary::
@@ -13,17 +13,6 @@ Data types are used to store and process data in MyoVerse. They are used to stor
     KinematicsData
     VirtualHandKinematics
 
-If you wish to apply :ref:`filters` to the data, you can use the following functions:
-
-.. currentmodule:: myoverse.datatypes
-.. autosummary::
-    :toctree: generated/datatypes
-    :template: function.rst
-
-    _Data.apply_filter
-    _Data.apply_filter_sequence
-    _Data.apply_filter_pipeline
-
 Base Data Class
 -----------------
 .. important:: If you wish to add a new data type make sure they inherit from the following base class.
@@ -34,5 +23,3 @@ Base Data Class
     :template: class.rst
 
     _Data
-
-

examples/01_tutorials/1_understanding_basics.py

@@ -20,9 +20,13 @@
 import torch
 import myoverse
 
-# Get the path to the data file
-SCRIPT_DIR = Path(__file__).parent.resolve()
-DATA_DIR = SCRIPT_DIR.parent / "data"
+# Get the path to the data file (works in both script and Sphinx-Gallery context)
+try:
+    SCRIPT_DIR = Path(__file__).parent.resolve()
+    DATA_DIR = SCRIPT_DIR.parent / "data"
+except NameError:
+    # Running in Sphinx-Gallery - cwd is project root
+    DATA_DIR = Path.cwd() / "examples" / "data"
 
 with open(DATA_DIR / "emg.pkl", "rb") as f:
     emg_data = pkl.load(f)

examples/01_tutorials/2_complex_filtering.py

@@ -18,8 +18,13 @@
 import torch
 import myoverse
 
-SCRIPT_DIR = Path(__file__).parent.resolve()
-DATA_DIR = SCRIPT_DIR.parent / "data"
+# Get the path to the data file (works in both script and Sphinx-Gallery context)
+try:
+    SCRIPT_DIR = Path(__file__).parent.resolve()
+    DATA_DIR = SCRIPT_DIR.parent / "data"
+except NameError:
+    # Running in Sphinx-Gallery - cwd is project root
+    DATA_DIR = Path.cwd() / "examples" / "data"
 
 with open(DATA_DIR / "emg.pkl", "rb") as f:
     emg_data = pkl.load(f)

examples/01_tutorials/3_create_dataset.py

@@ -18,9 +18,13 @@
 
 from myoverse.datasets import DatasetCreator, Modality
 
-# Get the directory where this script is located
-SCRIPT_DIR = Path(__file__).parent.resolve()
-DATA_DIR = SCRIPT_DIR.parent / "data"
+# Get the directory where this script is located (works in both script and Sphinx-Gallery context)
+try:
+    SCRIPT_DIR = Path(__file__).parent.resolve()
+    DATA_DIR = SCRIPT_DIR.parent / "data"
+except NameError:
+    # Running in Sphinx-Gallery - cwd is project root
+    DATA_DIR = Path.cwd() / "examples" / "data"
 
 # Create dataset with multiple modalities
 creator = DatasetCreator(

examples/01_tutorials/4_train_model.py

@@ -11,9 +11,13 @@
 
 import torch
 
-# Get paths
-SCRIPT_DIR = Path(__file__).parent.resolve()
-DATA_DIR = SCRIPT_DIR.parent / "data"
+# Get paths (works in both script and Sphinx-Gallery context)
+try:
+    SCRIPT_DIR = Path(__file__).parent.resolve()
+    DATA_DIR = SCRIPT_DIR.parent / "data"
+except NameError:
+    # Running in Sphinx-Gallery - cwd is project root
+    DATA_DIR = Path.cwd() / "examples" / "data"
 
 # Determine device
 DEVICE = "cuda" if torch.cuda.is_available() else "cpu"

examples/02_filters/2_temporal_filters.py

@@ -19,9 +19,13 @@
 import torch
 import myoverse
 
-# Get the path to the data file
-SCRIPT_DIR = Path(__file__).parent.resolve()
-DATA_DIR = SCRIPT_DIR.parent / "data"
+# Get the path to the data file (works in both script and Sphinx-Gallery context)
+try:
+    SCRIPT_DIR = Path(__file__).parent.resolve()
+    DATA_DIR = SCRIPT_DIR.parent / "data"
+except NameError:
+    # Running in Sphinx-Gallery - cwd is project root
+    DATA_DIR = Path.cwd() / "examples" / "data"
 
 with open(DATA_DIR / "emg.pkl", "rb") as f:
     emg_data = pkl.load(f)

examples/02_filters/3_spatial_filters.py

@@ -29,8 +29,13 @@
 # ----------------
 # Load EMG data and create a tensor with grid layouts.
 
-SCRIPT_DIR = Path(__file__).parent.resolve()
-DATA_DIR = SCRIPT_DIR.parent / "data"
+# Get the path to the data file (works in both script and Sphinx-Gallery context)
+try:
+    SCRIPT_DIR = Path(__file__).parent.resolve()
+    DATA_DIR = SCRIPT_DIR.parent / "data"
+except NameError:
+    # Running in Sphinx-Gallery - cwd is project root
+    DATA_DIR = Path.cwd() / "examples" / "data"
 
 with open(DATA_DIR / "emg.pkl", "rb") as f:
     raw_data = pkl.load(f)["1"][:80]  # 80 channels: 64 (8x8) + 16 (4x4)