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Review "Refresh Basic" Script 00 for Charlson/Elixhauser #15

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DBJHU opened this issue Oct 23, 2023 · 0 comments

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DBJHU commented Oct 23, 2023

Review this script and confirm alignment with the "level 1" requirements, edit as needed:
https://github.com/OHDSI/CureIdRegistry/blob/refresh_basic/Cohort%20curation%20scripts/00_CURE_ID_create_concept_table.sql

Charlson is important to include. Review these sources to determine concepts to include.

FeatureExtraction/CharlsonIndex.sql at main · OHDSI/FeatureExtraction (github.com)

Ben-Viernes-Benjamin-Viernes_CCIBySNOMED_2020Symposium Charlson Comorbidity Index (2).pdf

OMOP/calculated Elixhauser in R: Clinical characteristics and outcomes for 7,995 patients with SARS-CoV-2 infection | PLOS ONE

Here is the R package: comorbidity: Computing Comorbidity Scores (r-project.org)

Toolkit to Compute Time-Based Elixhauser Comorbidity Indices and Extension to Common Data Models - PMC (nih.gov)

SNOMED CT Disease Hierarchies and the Charlson Comorbidity Index (CCI): An analysis of OHDSI methods for determining CCI – OHDSI

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