{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":146140633,"defaultBranch":"main","name":"echopype","ownerLogin":"OSOceanAcoustics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-08-26T00:59:09.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/42682187?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1723137013.0","currentOid":""},"activityList":{"items":[{"before":"9fd00d2411a51c3b7daebdbda9802ae362ca6473","after":"aa01b0277bb2a152f7d23ebd8e762fae83c4c94f","ref":"refs/heads/main","pushedAt":"2024-08-08T16:42:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"Update README/index (#1373)\n\n* add FM to waveform_mode\r\n\r\n* add v0.9.0 whats new\r\n\r\n* update readme/index\r\n\r\n* remove gsoc 2024\r\n\r\n* include this PR to whats new\r\n\r\n* Add changes from ctuguinay\r\n\r\nCo-authored-by: Caesar Tuguinay <87830138+ctuguinay@users.noreply.github.com>\r\n\r\n* fix typo\r\n\r\n---------\r\n\r\nCo-authored-by: Caesar Tuguinay <87830138+ctuguinay@users.noreply.github.com>","shortMessageHtmlLink":"Update README/index (#1373)"}},{"before":"130a8ed9ac63341e6f9d8a884d864b672f8dd1bc","after":"9fd00d2411a51c3b7daebdbda9802ae362ca6473","ref":"refs/heads/main","pushedAt":"2024-08-08T02:34:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Allow external arrays in add depth; Add universal ping time alignment function (#1369)\n\n* move depth tests outside of consolidate_integration\r\n\r\n* add space\r\n\r\n* add align_to_ping_time function, and replace the other interp functions\r\n\r\n* modify test to no longer check for ffill condition\r\n\r\n* add test for align_ping_time_values\r\n\r\n* allow external depth_offset and tilt arrays to add_depth\r\n\r\n* add test for multidim depth offset and tilt value errors\r\n\r\n* fix test_add_location\r\n\r\n* remove redundant aligning to ping time logic\r\n\r\n* add case where external_da time is None; be more lenient on dropping NaNs in harmonize env param times\r\n\r\n* add tests for irregular expected_da inputs\r\n\r\n* simplify glider test\r\n\r\n* check that the correct extrapolation was done\r\n\r\n* fix glider azfp test\r\n\r\n* separate out interp from nmea selection\r\n\r\n* fix loc name\r\n\r\n* fix loc names\r\n\r\n* fix estimate background noise upsampling\r\n\r\n* Update echopype/utils/align.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/utils/align.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/consolidate/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/consolidate/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* set 3 senarios to 4 scenarios\r\n\r\n---------\r\n\r\nCo-authored-by: Wu-Jung Lee ","shortMessageHtmlLink":"Allow external arrays in add depth; Add universal ping time alignment…"}},{"before":"f9c1b27c7f6523d92a7bc6a1276e9d04fe5f668e","after":"130a8ed9ac63341e6f9d8a884d864b672f8dd1bc","ref":"refs/heads/main","pushedAt":"2024-08-06T01:04:51.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"[pre-commit.ci] pre-commit autoupdate (#1372)\n\nupdates:\r\n- [github.com/psf/black: 24.4.2 → 24.8.0](https://github.com/psf/black/compare/24.4.2...24.8.0)\r\n- [github.com/PyCQA/flake8: 7.1.0 → 7.1.1](https://github.com/PyCQA/flake8/compare/7.1.0...7.1.1)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"[pre-commit.ci] pre-commit autoupdate (#1372)"}},{"before":"75c59898168a0a1b7ea11ab663b5358c7d84b045","after":"a6ef178e24f177400a17b88af4bafda3117a851d","ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-08-05T22:44:57.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"pre-commit-ci[bot]","name":null,"path":"/apps/pre-commit-ci","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/68672?s=80&v=4"},"commit":{"message":"[pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/psf/black: 24.4.2 → 24.8.0](https://github.com/psf/black/compare/24.4.2...24.8.0)\n- [github.com/PyCQA/flake8: 7.1.0 → 7.1.1](https://github.com/PyCQA/flake8/compare/7.1.0...7.1.1)","shortMessageHtmlLink":"[pre-commit.ci] pre-commit autoupdate"}},{"before":"cf4de641eb6c0407ea8e4579a7ae3952a365b770","after":"f9c1b27c7f6523d92a7bc6a1276e9d04fe5f668e","ref":"refs/heads/main","pushedAt":"2024-07-23T16:34:06.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"`.drop` to `.drop_vars` (#1364)\n\n* drop to drop_vars\r\n\r\n* drop to drop vars in ecs\r\n\r\n* replace more drop with drop_vars","shortMessageHtmlLink":".drop to .drop_vars (#1364)"}},{"before":"be5398b7a2917fcfd3363ab225f3283a37661b5b","after":"cf4de641eb6c0407ea8e4579a7ae3952a365b770","ref":"refs/heads/main","pushedAt":"2024-07-19T23:38:57.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Use latest MRU parser version; `ep.consolidate.add_location` can be based off Datagram Type (#1359)\n\n* update mru parser to use rick towler's latest pyEcholab version\r\n\r\n* add datagram type selection in add depth, separate parsing of mru0 and mru1\r\n\r\n* fix consolidation and echodata tests\r\n\r\n* revert latitude/longitude_nmea to latitude/longitude\r\n\r\n* fix test_add_location\r\n\r\n* for add_location, factor out warnings/errors and create tests for warnings/errors\r\n\r\n* Update echopype/convert/parse_base.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/convert/parse_base.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/convert/set_groups_ek80.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/consolidate/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* move location tests outside of general consolidate tests; be more specific as to what args are allowed, fix docstrings\r\n\r\n* put the error and warning checks into the same generalized function\r\n\r\n* Update echopype/tests/convert/test_convert_ek80.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/consolidate/loc_utils.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/consolidate/loc_utils.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* import typing Union, fix small test\r\n\r\n* use correct log name\r\n\r\n---------\r\n\r\nCo-authored-by: Wu-Jung Lee \r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Use latest MRU parser version; ep.consolidate.add_location can be b…"}},{"before":"5eb49b6e329fbd5dbb0ffa080fb5f99f7bf09252","after":"be5398b7a2917fcfd3363ab225f3283a37661b5b","ref":"refs/heads/main","pushedAt":"2024-07-19T23:38:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Allow Waveform Mode FM in Calibrate API (#1363)\n\n* allow waveform mode FM in api\r\n\r\n* add ts test\r\n\r\n* add wu-jung's suggestion","shortMessageHtmlLink":"Allow Waveform Mode FM in Calibrate API (#1363)"}},{"before":"7664227dde2fe3c80bea358bb4e7cb7320c5d468","after":"5eb49b6e329fbd5dbb0ffa080fb5f99f7bf09252","ref":"refs/heads/main","pushedAt":"2024-07-19T21:06:32.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"docs: Update Contributing guide (#1356)\n\n* change contributing from rst to md, update first section\r\n\r\n* update testing\r\n\r\n* update pre-commit\r\n\r\n* update up to CI runs\r\n\r\n* update versions\r\n\r\n* remove separators, minor tweak\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* fix typos, tweaks\r\n\r\n* tweaking refs\r\n\r\n* fix typos\r\n\r\n* Apply suggestions from code review\r\n\r\nCo-authored-by: Caesar Tuguinay <87830138+ctuguinay@users.noreply.github.com>\r\n\r\n* add changes suggested by review\r\n\r\n* add CI_checks image\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Caesar Tuguinay <87830138+ctuguinay@users.noreply.github.com>","shortMessageHtmlLink":"docs: Update Contributing guide (#1356)"}},{"before":"f3b4d9ab80a40f330ab5ec3c34017a40c20e52ca","after":"7664227dde2fe3c80bea358bb4e7cb7320c5d468","ref":"refs/heads/main","pushedAt":"2024-07-19T20:55:21.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"Add details on the Ping acoustic library (#1362)\n\n* Add details on the Ping acoustic library\r\n\r\n---------\r\n\r\nCo-authored-by: leewujung \r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Add details on the Ping acoustic library (#1362)"}},{"before":"940b1da082276caa40907f1854c0bf7e86aaa4dd","after":"f3b4d9ab80a40f330ab5ec3c34017a40c20e52ca","ref":"refs/heads/main","pushedAt":"2024-07-16T18:34:42.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Modify dask image in requirement.txt (#1361)\n\n* modify dask image in requirement.txt\r\n\r\n* dask-image is a separate package!","shortMessageHtmlLink":"Modify dask image in requirement.txt (#1361)"}},{"before":"8528214f416a0fa5770e1c6e722b4328d5a8cbbc","after":"940b1da082276caa40907f1854c0bf7e86aaa4dd","ref":"refs/heads/main","pushedAt":"2024-07-16T14:51:00.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"Added alpha-version code for new AZFP6 format (#1323)\n\n* Added alpha-version code for new AZFP6 format\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* Fixed flake8 convention fails\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* Added tests for AZFP6 standard. Reduced AZFP6 group by inheriting from AZFP\r\n\r\n* Ingrated additional parser args added since last pull\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* Fixed failing azfp6 tests to work with truncated raw files\r\n\r\n* Fixed flak8 error in parse_azfp6\r\n\r\n---------\r\n\r\nCo-authored-by: adash@aslenv.com \r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Amanda Dash ","shortMessageHtmlLink":"Added alpha-version code for new AZFP6 format (#1323)"}},{"before":"7778400f67f0e004d5592ceb3b3722ae3090cf76","after":null,"ref":"refs/heads/dependabot/github_actions/actions/setup-python-5.1.1","pushedAt":"2024-07-16T01:21:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":"d4cf8ea7b2d7882723403afe4a3ba69a7dd1391a","after":"8528214f416a0fa5770e1c6e722b4328d5a8cbbc","ref":"refs/heads/main","pushedAt":"2024-07-16T01:21:14.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"chore(deps): bump actions/setup-python from 5.1.0 to 5.1.1 (#1360)\n\nBumps [actions/setup-python](https://github.com/actions/setup-python) from 5.1.0 to 5.1.1.\r\n- [Release notes](https://github.com/actions/setup-python/releases)\r\n- [Commits](https://github.com/actions/setup-python/compare/v5.1.0...v5.1.1)\r\n\r\n---\r\nupdated-dependencies:\r\n- dependency-name: actions/setup-python\r\n dependency-type: direct:production\r\n update-type: version-update:semver-patch\r\n...\r\n\r\nSigned-off-by: dependabot[bot] \r\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>","shortMessageHtmlLink":"chore(deps): bump actions/setup-python from 5.1.0 to 5.1.1 (#1360)"}},{"before":null,"after":"7778400f67f0e004d5592ceb3b3722ae3090cf76","ref":"refs/heads/dependabot/github_actions/actions/setup-python-5.1.1","pushedAt":"2024-07-15T22:24:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"chore(deps): bump actions/setup-python from 5.1.0 to 5.1.1\n\nBumps [actions/setup-python](https://github.com/actions/setup-python) from 5.1.0 to 5.1.1.\n- [Release notes](https://github.com/actions/setup-python/releases)\n- [Commits](https://github.com/actions/setup-python/compare/v5.1.0...v5.1.1)\n\n---\nupdated-dependencies:\n- dependency-name: actions/setup-python\n dependency-type: direct:production\n update-type: version-update:semver-patch\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"chore(deps): bump actions/setup-python from 5.1.0 to 5.1.1"}},{"before":"f065cab462c4f5981e8e78299a35e6af6e32c4c4","after":"d4cf8ea7b2d7882723403afe4a3ba69a7dd1391a","ref":"refs/heads/main","pushedAt":"2024-07-15T17:34:26.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"hotfix: Temporarily skip datagrams generated by EC150 (#1357)\n\n* change parse_ek to skip EC150 datagrams\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* fix pre-commit errors, update test\r\n\r\n* fix bug to look for cconfiguration in self.config_datagram for ek60\r\n\r\n* comment out print statement\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: ctuguinay ","shortMessageHtmlLink":"hotfix: Temporarily skip datagrams generated by EC150 (#1357)"}},{"before":"aaaba0ca35409dfffceae4a122a1ec1b64a72cb4","after":"f065cab462c4f5981e8e78299a35e6af6e32c4c4","ref":"refs/heads/main","pushedAt":"2024-07-13T01:31:12.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Add Index Aggregation Option for Cleaning Mask Functions (#1326)\n\n* initial commit for adding index aggregations in noise functions\r\n\r\n* fix comment\r\n\r\n* remove notebook\r\n\r\n* simplify pooling names; add tests for index binning pooling\r\n\r\n* fix comment\r\n\r\n* remove unnecessary generic filter args\r\n\r\n* add comment for index binning\r\n\r\n* expand range sample for index binning\r\n\r\n* add index_binning_upsampled_downsample_along_depth\r\n\r\n* fix failing test: incorrect passing of args (stumped me for a few hours)\r\n\r\n* modify chunking schemmes; moodified pool tocomputesevery channel\r\n\r\n* fix test\r\n\r\n* remove TODO\r\n\r\n* Update echopype/clean/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* rework inputs to use meters and dB\r\n\r\n* add test for extract dB\r\n\r\n* fix db to dB\r\n\r\n* add Examples\r\n\r\n* add backticks\r\n\r\n* refix example formatting\r\n\r\n* use range var to also include echo range\r\n\r\n* modify ticks and double quotes to match wu-jung and numpy docstring style guide suggestions\r\n\r\n* allow case insensitivity for dB; add further transient mask description\r\n\r\n* switch func from str to np function before passing to pooling functions\r\n\r\n* add progress\r\n\r\n* add test for reflection\r\n\r\n* delete notebook\r\n\r\n* add wu-jung's review suggestions\r\n\r\n* Update test_noise.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n---------\r\n\r\nCo-authored-by: Wu-Jung Lee ","shortMessageHtmlLink":"Add Index Aggregation Option for Cleaning Mask Functions (#1326)"}},{"before":"d3ad7e391f11a91ceed59f1e0226fb5110d80d4a","after":"aaaba0ca35409dfffceae4a122a1ec1b64a72cb4","ref":"refs/heads/main","pushedAt":"2024-07-12T20:59:03.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"docs: Merge data processing level changes from `stable` (#1355)\n\n* add processing level changes from stable\r\n\r\n* fix bib","shortMessageHtmlLink":"docs: Merge data processing level changes from stable (#1355)"}},{"before":"a2a98b6e487e33d4699653e1442a65c843e7a870","after":"d3ad7e391f11a91ceed59f1e0226fb5110d80d4a","ref":"refs/heads/main","pushedAt":"2024-07-12T16:06:21.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Use Echodata `Platform` and `Beam_group1` Variables to Compute Depth for EK60/EK80 (#1319)\n\n* init commit to save progress\r\n\r\n* check for sonar model only if echodata is not None; test depth utils dims\r\n\r\n* add descriptions and add processing level\r\n\r\n* fix extra equals\r\n\r\n* reorder util args\r\n\r\n* remove pytest mark test\r\n\r\n* test for add_depth errors\r\n\r\n* remove z scaling\r\n\r\n* add test for platform vertical offsets\r\n\r\n* modify platform vertical offset test to use only 1 if statement\r\n\r\n* add angle tests\r\n\r\n* add history attribute check\r\n\r\n* add logger warning for nans in group data variables and test for this\r\n\r\n* add todo\r\n\r\n* add check for beam group 1 and beam group 2\r\n\r\n* only interpolate when time2 and ping_time_da are not equal (post rename)\r\n\r\n* fix assignment error\r\n\r\n* Update echopype/consolidate/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/consolidate/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* tilt and depth offset overwrite what is used in echodata group variables; add individual tests for the angle util functions\r\n\r\n* fix tests\r\n\r\n* kwaargs to kwargs\r\n\r\n* Update echopype/tests/consolidate/test_consolidate_integration.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/tests/consolidate/test_consolidate_integration.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/tests/consolidate/test_consolidate_integration.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* fix angle tests\r\n\r\n* simplify tests\r\n\r\n* fix tests\r\n\r\n* add platform angle interpolation\r\n\r\n* expand platform angle test to use interpolation, and add interpolation test for checking platform vertical offset values\r\n\r\n* refactor out interp and rename handling\r\n\r\n* add link\r\n\r\n---------\r\n\r\nCo-authored-by: Wu-Jung Lee ","shortMessageHtmlLink":"Use Echodata Platform and Beam_group1 Variables to Compute Depth …"}},{"before":"872dd032dc64f8c3fc69e9d87ab81533ed4d918f","after":"a2a98b6e487e33d4699653e1442a65c843e7a870","ref":"refs/heads/main","pushedAt":"2024-07-11T03:44:27.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Padding Short Pings (#1353)","shortMessageHtmlLink":"Padding Short Pings (#1353)"}},{"before":"205f69956ff7d950c7d66629cdf59eaa240404f3","after":"872dd032dc64f8c3fc69e9d87ab81533ed4d918f","ref":"refs/heads/main","pushedAt":"2024-07-03T22:04:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"Fix problems in applying `compute_Sv` on combined `EchoData` object (#1328)\n\n* remove redundancy in code, one has no effects, one causing error in harmonize env params\r\n\r\n* ffill after interp time1 to ping_time, occurring for combined EchoData objects\r\n\r\n* add bottleneck to requirements\r\n\r\n* add test and drop time1\r\n\r\n---------\r\n\r\nCo-authored-by: ctuguinay ","shortMessageHtmlLink":"Fix problems in applying compute_Sv on combined EchoData object (#…"}},{"before":"246b7e402a43485c1ae7ce625d56099704680fca","after":"205f69956ff7d950c7d66629cdf59eaa240404f3","ref":"refs/heads/main","pushedAt":"2024-07-03T20:29:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Add Scalability Options (`use_swap` and chunks) for `ep.calibrate.compute_Sv` (#1331)\n\n* initial commit of adding use swap and chunk dictionary\r\n\r\n* remove_noise to remove_background_noise\r\n\r\n* skip failing remove bottom test\r\n\r\n* fix message\r\n\r\n* add integration mark\r\n\r\n* add use swap and chunk dict to ek60 compute Sv test against matlab and echoview\r\n\r\n* use Thread Synchronizer\r\n\r\n* remove use swap and chunk dict\r\n\r\n* add echodata chunk\r\n\r\n* add chek echodata backscatter size\r\n\r\n* Update echopype/calibrate/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* Update echopype/calibrate/api.py\r\n\r\nCo-authored-by: Wu-Jung Lee \r\n\r\n* incorporate wu-jung's suggestion for the warning message\r\n\r\n* move check echodata backscatter, add further test cases, add TODO for nbyte adding in check echodata backscatter size\r\n\r\n* add wu-jung suggestion for separating cases between sonar models\r\n\r\n* grab waveform and encode from calibration object\r\n\r\n---------\r\n\r\nCo-authored-by: Wu-Jung Lee ","shortMessageHtmlLink":"Add Scalability Options (use_swap and chunks) for `ep.calibrate.com…"}},{"before":"9e669ff0e648989eb7307c5313645b0c18188a11","after":"246b7e402a43485c1ae7ce625d56099704680fca","ref":"refs/heads/main","pushedAt":"2024-07-02T15:28:27.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"float16 to float32 in channel mode test (#1351)","shortMessageHtmlLink":"float16 to float32 in channel mode test (#1351)"}},{"before":"e09e6a4bcc82f228a87a1ab393ef928ddcfbea99","after":"9e669ff0e648989eb7307c5313645b0c18188a11","ref":"refs/heads/main","pushedAt":"2024-07-01T22:24:44.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"float16 to float32 (#1350)","shortMessageHtmlLink":"float16 to float32 (#1350)"}},{"before":"3b10ecf955bcd9f53908270f36eb4bbcba0aa235","after":null,"ref":"refs/heads/gsoc-issue-template","pushedAt":"2024-06-28T21:53:35.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"}},{"before":"949b3d8ba3c0df5cb3bd165e058abf0baa99e089","after":null,"ref":"refs/heads/revert-1337-fix_duck_array_warning","pushedAt":"2024-06-28T21:53:14.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"}},{"before":null,"after":"949b3d8ba3c0df5cb3bd165e058abf0baa99e089","ref":"refs/heads/revert-1337-fix_duck_array_warning","pushedAt":"2024-06-28T21:43:35.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"Revert \"Fix Duck Array `RuntimeWarning` for EK60 `ep.open_raw`\"","shortMessageHtmlLink":"Revert \"Fix Duck Array RuntimeWarning for EK60 ep.open_raw\""}},{"before":"f168e496e97b48944378f05e3eab89df40798bfa","after":"e09e6a4bcc82f228a87a1ab393ef928ddcfbea99","ref":"refs/heads/main","pushedAt":"2024-06-28T19:38:16.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Merge pull request #1337 from ctuguinay/fix_duck_array_warning\n\nFix Duck Array `RuntimeWarning` for EK60 `ep.open_raw`","shortMessageHtmlLink":"Merge pull request #1337 from ctuguinay/fix_duck_array_warning"}},{"before":"18192b5d4c020e855cdd0949f029541c30948347","after":"f168e496e97b48944378f05e3eab89df40798bfa","ref":"refs/heads/main","pushedAt":"2024-06-28T19:00:21.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Merge pull request #1345 from ctuguinay/MVBS_apply_mask\n\nAllow `MVBS` into `ep.mask.apply_mask`, and add Alignment Check for Target Variable and Mask","shortMessageHtmlLink":"Merge pull request #1345 from ctuguinay/MVBS_apply_mask"}},{"before":"75877df25049c1e75b2c220df67012e4aab4a17b","after":"18192b5d4c020e855cdd0949f029541c30948347","ref":"refs/heads/main","pushedAt":"2024-06-27T19:59:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"leewujung","name":"Wu-Jung Lee","path":"/leewujung","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15334215?s=80&v=4"},"commit":{"message":"Update docs for visualization (#1347)\n\n* initial update of viz docs\r\n\r\n* use jet and ek500 colormaps\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n* add range plotting\r\n\r\n* fix typo\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>","shortMessageHtmlLink":"Update docs for visualization (#1347)"}},{"before":"b46ed724d980b0960f1788f27b79d6dd4594557c","after":"75877df25049c1e75b2c220df67012e4aab4a17b","ref":"refs/heads/main","pushedAt":"2024-06-25T03:33:35.000Z","pushType":"pr_merge","commitsCount":36,"pusher":{"login":"ctuguinay","name":"Caesar Tuguinay","path":"/ctuguinay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/87830138?s=80&v=4"},"commit":{"message":"Merge pull request #1318 from ctuguinay/add_idx_bot\n\nAdd `.bot` and `.idx` files to EK60/EK80 parsing","shortMessageHtmlLink":"Merge pull request #1318 from ctuguinay/add_idx_bot"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAElXpGPgA","startCursor":null,"endCursor":null}},"title":"Activity · OSOceanAcoustics/echopype"}