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In this section, the paragraph pasted below on calculating specific intestinal permeability from experimentally measured values, e.g. from Caco-2-cell permeability assays, should be removed from the documentation. This is not part of PK-Sim and may lead to misunderstandings (as in Open-Systems-Pharmacology/Forum#668).
In addition to the calculated specific intestinal permeability, experimentally determined permeabilities, e.g. from Caco-2-cell permeability assays can be used. However, due to the large inter-laboratory variability in Caco-2 permeations, a proper calibration of the measured in vitro values and the calculated in silico permeabilities for a defined set of compounds is necessary. If experimentally determined values for intestinal permeabilities are available and the customized calibration method has been implemented in PK-Sim®, this option is then available in the drop-down menu in the Calculation methods window.
The text was updated successfully, but these errors were encountered:
I would rather enable calibration as user input (not much to do for this: Open-Systems-Pharmacology/PK-Sim#1631) and rewrite this paragraph correspondingly.
I agree with Yuri, the paragraph is not wrong per see, it might just need a bit of more detail / be more specific and a minor correction:
The "calculation methods" window it refers to is actually the "Parameter Alternative" list in the Compound settings when you CREATE or CONFIGURE your simulations:
Also fine for me, but then I would suggest to add a description for the user on how to conduct the correlation and come up with meaningful values for the calibration parameters...
In this section, the paragraph pasted below on calculating specific intestinal permeability from experimentally measured values, e.g. from Caco-2-cell permeability assays, should be removed from the documentation. This is not part of PK-Sim and may lead to misunderstandings (as in Open-Systems-Pharmacology/Forum#668).
The text was updated successfully, but these errors were encountered: