Skip to content
This repository has been archived by the owner on Sep 24, 2019. It is now read-only.

invalid terms compile without error (and insufficient warning) #48

Open
ncatlett opened this issue Sep 20, 2012 · 0 comments
Open

invalid terms compile without error (and insufficient warning) #48

ncatlett opened this issue Sep 20, 2012 · 0 comments
Labels

Comments

@ncatlett
Copy link
Member

Terms using the functions pmod() or products() as outer functions compile without error or sufficient semantic warning. These BEL functions should be used within a proteinAbundance() or reaction() function, respectively.

Examples:

pmod(p(HGNC:PSEN1))

-this gets a warning that the expected signature for pmod is missing (mod type, aa, position) - nothing about the missing outer function

products(g(HGNC:IL12B),g(HGNC:CXCL10))

-this gets no warning

I suspect that reactants(), sub(), trunc() and fus() will behave similarly. These terms seem to be handled poorly by the API - see related issue for KAM Navigator.

Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
Projects
None yet
Development

No branches or pull requests

1 participant